Clone Sequence Records
BS16385.3prime Sequence
843 bp (793 high quality bases) assembled on 2007-05-15
> BS16385.3prime
ATGGTCTAGAAAGCTTCTATAAAGAATTAAATTCTATCTCCTTGGCATAA
GCTTCTCTCAGCATTTTCTCACGTAACCGGGTTACATCCTCGTCTATCCG
TACAAGAGCTCGAATTTTCTCACTCAATTCACCAGGAGTTCGTTTCCACA
ACCAAAACATGTAAAGTGGTATATAAAGCATGGATGACAACGCCGTGAAC
CAACCAAAAGCATGCGCCCACCATGGATAGCTGTAGTCCAGATACTTAAC
AGGAGTCCACTGAACTATGTTAAAGAAAAACACTCCCAAGCATATAGCGG
GCGTTGTGACACACCAGCAGAACTTCCACCAAACAGTGGGATAATATCCG
ATCATATCCTTTATTCCGTCATAAAATCGATCCACTCCATAGCACCAAGA
TATTGAAACACATTCAAAGAATATGAGCCACAGTAAGCAAAAGCCGCTAA
CTGCATATGAATCCAATATTTGAAAAATATACATGCCACCTTGTGTAATA
CAGGTTAAGCCCACTAAGTAGCTAAGAGCGCATACAATAGCAATAAATAT
TTCTTTCCGCTTCCGCAGCAACTGCGGCCATTCATCAATAATGGCAGTGA
TAAAGCCCTCCATTGTACAAAACTGTGAGTCCAATCCAATGAGCAGAAGC
ATGAAGAAGAAGAGGCAAGACCACATTGGAGACCCTGGTAACTGCAGAAC
TGCCGATGGATAGACAAGAAATGCAAGGCCAGGTCCTGATGCGGCTACAT
CAGCCACTGGTCGCTGTTGCTCGTGAGCCATAAATCCTATTACCCGAAAT
ATTACGAATCCAGCAAACATACTGGTGCTAGAATTAACTGTGC
BS16385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1732-PA | 1911 | CG1732-RA | 1085..1911 | 843..17 | 4085 | 99.7 | Minus |
| CG1732-PB | 1527 | CG1732-RB | 1085..1437 | 843..491 | 1715 | 99.4 | Minus |
| CG1732-PB | 1527 | CG1732-RB | 1438..1527 | 450..361 | 450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1732-RA | 2895 | CG1732-RA | 1230..2057 | 843..16 | 4110 | 99.8 | Minus |
| CG1732-RB | 2853 | CG1732-RB | 1581..2015 | 450..16 | 2175 | 100 | Minus |
| CG1732-RB | 2853 | CG1732-RB | 1228..1580 | 843..491 | 1735 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 633508..633861 | 843..490 | 1740 | 99.4 | Minus |
| 4 | 1348131 | 4 | 633921..634125 | 490..286 | 1025 | 100 | Minus |
| 4 | 1348131 | 4 | 634176..634344 | 287..119 | 845 | 100 | Minus |
| 4 | 1348131 | 4 | 634408..634512 | 120..16 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:14:40 has no hits.
BS16385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:38 Download gff for
BS16385.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-PA | 1085..1911 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:37 Download gff for
BS16385.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-RA | 1230..2065 | 7..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:54 Download gff for
BS16385.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-RA | 1230..2065 | 7..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:54 Download gff for
BS16385.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 633508..633860 | 491..843 | 99 | -> | Minus |
| 4 | 633921..634124 | 287..490 | 100 | -> | Minus |
| 4 | 634177..634344 | 119..286 | 100 | -> | Minus |
| 4 | 634410..634520 | 7..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:37 Download gff for
BS16385.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 654134..654486 | 491..843 | 99 | -> | Minus |
| arm_4 | 654547..654750 | 287..490 | 100 | -> | Minus |
| arm_4 | 654803..654970 | 119..286 | 100 | -> | Minus |
| arm_4 | 655036..655146 | 7..118 | 97 | | Minus |
BS16385.5prime Sequence
821 bp (640 high quality bases) assembled on 2007-05-15
> BS16385.5prime
GAAGTTATCAGTCGACATGTACACAAACTCCGCAAGTGATGGTGACGGAG
GAGGAGATGTGTGTAAGCACGAATCTATTGAAATGAGTAAAGAATTGGGC
CACACAACCAGCTTGCAGTCCAGCTCACCTACAACTACGGACACGTCCAA
TAAACAGCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGT
CTTCCAAAATGGATTTCATACTATCAGTAGTGGGCCTAGCTATAGGTTTG
GGAAACGTTTGGCGATTTCCCTATTTGTGCTACAAAAATGGAGGCGGTGC
ATTTATATTACCATACATTATTACACTGTTTTTGGCAGGTATTCCAATGT
TTTTCATGGAACTAGCTCTTGGTCAAATGTTGACGATTGGTGGACTCGGT
GTATTCAAAATTGCACCCATATTTAAAGGAATTGGGTATGCTGCTGCTGT
AATGTCTTGTTGGATGAATGTATACTATATTGTCATTCTTGCGTGGGCGG
TATTTTACTTCTTTATGTCGATGAGAGCAGATGTTCCGTGGAGAACGTGC
AACAATTGGTGGAACACAGTCAACTGTGTCAGTCAATATGAAAGGAAAAA
TTTGCATTGCTGGGATAAGATTATCAACGGCACCACGCAAAAGGTTTGCT
CCGTATCTGCTCTTAACATAACATCTTTAGAACTCACAGATCCAGTCAAA
GAGTTTTGGGAGCGGCGAGCTCTTCAATATCGCATGGTATTGAGGAGATT
GGAAATATTCGCTGGGAGTTGGCTGGAACTTATTACTTGTTTGGATCCTC
TGCTACTTTTGTATTTGGAAG
BS16385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1732-PA | 1911 | CG1732-RA | 1..711 | 17..727 | 3530 | 99.8 | Plus |
| CG1732-PB | 1527 | CG1732-RB | 1..711 | 17..727 | 3530 | 99.8 | Plus |
| CG1732-PA | 1911 | CG1732-RA | 711..766 | 726..781 | 280 | 100 | Plus |
| CG1732-PB | 1527 | CG1732-RB | 711..766 | 726..781 | 280 | 100 | Plus |
| CG1732-PA | 1911 | CG1732-RA | 766..807 | 780..821 | 210 | 100 | Plus |
| CG1732-PB | 1527 | CG1732-RB | 766..807 | 780..821 | 210 | 100 | Plus |
| CG8380-PA | 1896 | DAT-RA | 144..182 | 253..291 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1732-RB | 2853 | CG1732-RB | 138..950 | 11..821 | 3985 | 99.5 | Plus |
| CG1732-RA | 2895 | CG1732-RA | 140..952 | 11..821 | 3985 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 631624..631895 | 158..429 | 1360 | 100 | Plus |
| 4 | 1348131 | 4 | 632205..632389 | 528..712 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 629830..629979 | 11..160 | 720 | 98.7 | Plus |
| 4 | 1348131 | 4 | 632021..632129 | 422..530 | 545 | 100 | Plus |
| 4 | 1348131 | 4 | 632448..632559 | 712..821 | 460 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:59:59 has no hits.
BS16385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:40 Download gff for
BS16385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-PB | 1..807 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:48:05 Download gff for
BS16385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-RA | 131..952 | 1..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:47 Download gff for
BS16385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-RA | 131..952 | 1..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:47 Download gff for
BS16385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 631627..631894 | 161..428 | 100 | -> | Plus |
| 4 | 632028..632129 | 429..530 | 100 | -> | Plus |
| 4 | 632208..632388 | 531..711 | 100 | -> | Plus |
| 4 | 632448..632559 | 712..821 | 98 | | Plus |
| 4 | 629821..629979 | 1..160 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:48:05 Download gff for
BS16385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 650447..650605 | 1..160 | 96 | -> | Plus |
| arm_4 | 652253..652520 | 161..428 | 100 | -> | Plus |
| arm_4 | 652654..652755 | 429..530 | 100 | -> | Plus |
| arm_4 | 652834..653014 | 531..711 | 100 | -> | Plus |
| arm_4 | 653074..653185 | 712..821 | 98 | | Plus |
BS16385.complete Sequence
1943 bp assembled on 2009-08-26
GenBank Submission: KX805487
> BS16385.complete
GAAGTTATCAGTCGACATGTACACAAACTCCGCAAGTGATGGTGACGGAG
GAGGAGATGTGTGTAAGCACGAATCTATTGAAATGAGTAAAGAATTGGGC
CACACAACCAGCTTGCAGTCCAGCTCACCTACAACTACGGACACGTCCAA
TAAACAGCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGT
CTTCCAAAATGGATTTCATACTATCAGTAGTGGGCCTAGCTATAGGTTTG
GGAAACGTTTGGCGATTTCCCTATTTGTGCTACAAAAATGGAGGCGGTGC
ATTTATATTACCATACATTATTACACTGTTTTTGGCAGGTATTCCAATGT
TTTTCATGGAACTAGCTCTTGGTCAAATGTTGACGATTGGTGGACTCGGT
GTATTCAAAATTGCACCCATATTTAAAGGAATTGGGTATGCTGCTGCTGT
AATGTCTTGTTGGATGAATGTATACTATATTGTCATTCTTGCGTGGGCGG
TATTTTACTTCTTTATGTCGATGAGAGCAGATGTTCCGTGGAGAACGTGC
AACAATTGGTGGAACACAGTCAACTGTGTCAGTCAATATGAAAGGAAAAA
TTTGCATTGCTGGGATAAGATTATCAACGGCACCACGCAAAAGGTTTGCT
CCGTATCTGCTCTTAACATAACATCTTTAGAACTCACAGATCCAGTCAAA
GAGTTTTGGGAGCGGCGAGCTCTTCAAATATCGCATGGTATTGAGGAGAT
TGGAAATATTCGCTGGGAGTTGGCTGGAACTTTATTACTTGTTTGGATCC
TCTGCTACTTTTGTATTTGGAAGGGAGTAAAATGGACAGGGAAAGTAGTA
TATTTTACTGCCTTGTTTCCCTACGTTCTCCTGACGATTCTACTGGTTCG
CGGAATTACATTACCTGGCGCTTTAGAAGGCATTAAATTTTATATAATTC
CAAACTTTTCAAAGTTGACTAATTCTGAGGTGTGGATCGACGCTGTGACG
CAAATATTTTTCTCATACGGGCTTGGACTTGGTACTTTGGTGGCGTTAGG
AAGTTACAACAAGTTTACCAATAACGTCTACAAGGACGCGCTTATTGTCT
GCACAGTTAATTCTAGCACCAGTATGTTTGCTGGATTCGTAATATTTTCG
GTAATAGGATTTATGGCTCACGAGCAACAGCGACCAGTGGCTGATGTAGC
CGCATCAGGACCTGGCCTTGCATTTCTTGTCTATCCATCGGCAGTTCTGC
AGTTACCAGGGTCTCCAATGTGGTCTTGCCTCTTCTTCTTCATGCTTCTG
CTCATTGGATTGGACTCACAGTTTTGTACAATGGAGGGCTTTATCACTGC
CATTATTGATGAATGGCCGCAGTTGCTGCGGAAGCGGAAAGAAATATTTA
TTGCTATTGTATGCGCTCTTAGCTACTTAGTGGGCTTAACCTGTATTACA
CAAGGTGGCATGTATATTTTTCAAATATTGGATTCATATGCAGTTAGCGG
CTTTTGCTTACTGTGGCTCATATTCTTTGAATGTGTTTCAATATCTTGGT
GCTATGGAGTGGATCGATTTTATGACGGAATAAAGGATATGATCGGATAT
TATCCCACTGTTTGGTGGAAGTTCTGCTGGTGTGTCACAACGCCCGCTAT
ATGCTTGGGAGTGTTTTTCTTTAACATAGTTCAGTGGACTCCTGTTAAGT
ATCTGGACTACAGCTATCCATGGTGGGCGCATGCTTTTGGTTGGTTCACG
GCGTTGTCATCCATGCTTTATATACCACTTTACATGTTTTGGTTGTGGAA
ACGAACTCCTGGTGAATTGAGTGAGAAAATTCGAGCTCTTGTACGGATAG
ACGAGGATGTAACCCGGTTACGTGAGAAAATGCTGAGAGAAGCTTATGCC
AAGGAGATAGAATTTAATTCTTTATAGAAGCTTTCTAGACCAT
BS16385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1732-RA | 1911 | CG1732-PA | 1..1911 | 17..1927 | 9540 | 99.9 | Plus |
| CG1732-RB | 1527 | CG1732-PB | 1..1437 | 17..1453 | 7170 | 99.9 | Plus |
| CG1732-RB | 1527 | CG1732-PB | 1438..1527 | 1494..1583 | 450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1732-RA | 2895 | CG1732-RA | 140..2057 | 11..1928 | 9560 | 99.9 | Plus |
| CG1732-RB | 2853 | CG1732-RB | 138..1580 | 11..1453 | 7185 | 99.9 | Plus |
| CG1732-RB | 2853 | CG1732-RB | 1581..2015 | 1494..1928 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 633491..633861 | 1084..1454 | 1855 | 100 | Plus |
| 4 | 1348131 | 4 | 631624..631895 | 158..429 | 1360 | 100 | Plus |
| 4 | 1348131 | 4 | 632448..632717 | 712..981 | 1350 | 100 | Plus |
| 4 | 1348131 | 4 | 633921..634125 | 1454..1658 | 1025 | 100 | Plus |
| 4 | 1348131 | 4 | 632205..632389 | 528..712 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 634176..634344 | 1657..1825 | 845 | 100 | Plus |
| 4 | 1348131 | 4 | 629830..629979 | 11..160 | 720 | 98.7 | Plus |
| 4 | 1348131 | 4 | 632021..632129 | 422..530 | 545 | 100 | Plus |
| 4 | 1348131 | 4 | 633327..633433 | 978..1084 | 535 | 100 | Plus |
| 4 | 1348131 | 4 | 634408..634512 | 1824..1928 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:34:12 has no hits.
BS16385.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:14 Download gff for
BS16385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-RA | 144..2054 | 17..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:21 Download gff for
BS16385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-RA | 146..2056 | 17..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:39 Download gff for
BS16385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1732-RA | 146..2056 | 17..1927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:39 Download gff for
BS16385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 633329..633432 | 980..1083 | 100 | -> | Plus |
| 4 | 632028..632129 | 429..530 | 100 | -> | Plus |
| 4 | 632208..632388 | 531..711 | 100 | -> | Plus |
| 4 | 632448..632715 | 712..979 | 100 | -> | Plus |
| 4 | 629836..629979 | 17..160 | 99 | -> | Plus |
| 4 | 631627..631894 | 161..428 | 100 | -> | Plus |
| 4 | 633491..633860 | 1084..1453 | 100 | -> | Plus |
| 4 | 633921..634124 | 1454..1657 | 100 | -> | Plus |
| 4 | 634177..634344 | 1658..1825 | 100 | -> | Plus |
| 4 | 634410..634511 | 1826..1927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:21 Download gff for
BS16385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 650462..650605 | 17..160 | 99 | -> | Plus |
| arm_4 | 654547..654750 | 1454..1657 | 100 | -> | Plus |
| arm_4 | 652253..652520 | 161..428 | 100 | -> | Plus |
| arm_4 | 652654..652755 | 429..530 | 100 | -> | Plus |
| arm_4 | 652834..653014 | 531..711 | 100 | -> | Plus |
| arm_4 | 653074..653341 | 712..979 | 100 | -> | Plus |
| arm_4 | 653955..654058 | 980..1083 | 100 | -> | Plus |
| arm_4 | 654117..654486 | 1084..1453 | 100 | -> | Plus |
| arm_4 | 654803..654970 | 1658..1825 | 100 | -> | Plus |
| arm_4 | 655036..655137 | 1826..1927 | 100 | | Plus |
BS16385.pep Sequence
Translation from 16 to 1926
> BS16385.pep
MYTNSASDGDGGGDVCKHESIEMSKELGHTTSLQSSSPTTTDTSNKQQLV
KIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPY
IITLFLAGIPMFFMELALGQMLTIGGLGVFKIAPIFKGIGYAAAVMSCWM
NVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWD
KIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGNIRW
ELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLP
GALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKF
TNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQRPVADVAASGPG
LAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEW
PQLLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLW
LIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVF
FFNIVQWTPVKYLDYSYPWWAHAFGWFTALSSMLYIPLYMFWLWKRTPGE
LSEKIRALVRIDEDVTRLREKMLREAYAKEIEFNSL*
BS16385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1732-PA | 636 | CG1732-PA | 1..636 | 1..636 | 3433 | 100 | Plus |
| CG1732-PB | 508 | CG1732-PB | 1..505 | 1..503 | 2548 | 95.9 | Plus |
| DAT-PA | 631 | CG8380-PA | 5..593 | 28..608 | 1405 | 45.2 | Plus |
| DAT-PB | 644 | CG8380-PB | 5..593 | 28..608 | 1405 | 45.2 | Plus |
| SerT-PB | 622 | CG4545-PB | 44..586 | 29..592 | 1316 | 43.3 | Plus |
