Clone Sequence Records
BS16386.3prime Sequence
866 bp (847 high quality bases) assembled on 2007-05-15
> BS16386.3prime
ATGGTCTAGAAAGCTTCTACTGCTGCTGCTCCGTCTCCATGTTCTTGGCA
CGCAGATACTTCAGCAGCATCTGCAGCGAATCGTAGGTATCGAAGTCGTC
GAGATTCCGCCGCGAAGATGACATGTTGGTGGGACGTGGCATGGCCAGTG
GGACGGGCAGCAGTTCGGGCATCACCGAATGGTGGGTGATCAGGGCCTTC
AGGCTGGAGAACTCCTTGCGGAAACCCTTGATTTTGTAGCCCCTTGGGGA
ACGTAGGATTATGTAGTTAGCTATTTTCGGCCCAGGTGGCGAGGGTACGC
GCAGTGTCAGTGCATAGCATCCTGGTTTGGAGCTGCTCTTCCGCACGAGA
AACGCACCTGGGCTCTTGCTTTGCAGGACTTCAACGGCTATGTCCCTGGA
TATGCCCGCCTGGTACCAGCAGGCATCCTTCAGCTCGAGATCCTCCTCAT
CGGATCCCACATTACCGAATGCGTTGGCCAAACTGCTGCATCGCTGGCCA
ACGGCACCCTGGTTCATCCGCAGGCGATTGGCAAAGATTTTCGGACTGGA
ATTTGCGCTGCTCGTTTCTCTTAAGTAGCGCTTCTTCAGGTTGAACTCGT
TATTGTCGTTCAGGTTAACATTGTCCAGCATCGGGATGGCTGTCAAGGAT
TGGCGGCACGAGTCACCGAACTTGCTGTCGATGTAGGAGTCCTCGTTGAT
GTAGCCATTCGAGTACACCGGCTGGATGTCCAGCGGCGCGCTCAAAGGAG
TCATGTCGCCCACCAATGGGCGTGACTCCTCGTTTTGGCGCAGCAAGCCC
ATTGTCAAGCGTTTGACCAGAGGAGGTTTGTCTGCCAATCGCTTGCAGCT
GGTTAGTTCGGTGGGC
BS16386.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32406-PA | 1425 | CG32406-RA | 576..1425 | 866..17 | 4225 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-RA | 2919 | CG32406-RA | 1380..2229 | 866..17 | 4235 | 99.9 | Minus |
CG33993-RB | 1316 | CG33993-RB | 483..787 | 436..128 | 295 | 73.5 | Minus |
CG33993-RA | 2404 | CG33993-RA | 1242..1546 | 436..128 | 295 | 73.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6025008..6025338 | 556..226 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 6024630..6024892 | 818..556 | 1315 | 100 | Minus |
3L | 28110227 | 3L | 6025416..6025627 | 228..17 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 6020114..6020164 | 866..816 | 240 | 98 | Minus |
3L | 28110227 | 3L | 5933900..5933967 | 135..202 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:36:26 has no hits.
BS16386.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:43 Download gff for
BS16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-PA | 576..1425 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:48:15 Download gff for
BS16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 1380..2231 | 12..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:50 Download gff for
BS16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PVRAP-RA | 1380..2231 | 12..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:50 Download gff for
BS16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6020114..6020162 | 818..866 | 97 | -> | Minus |
3L | 6024631..6024892 | 556..817 | 100 | -> | Minus |
3L | 6025009..6025337 | 227..555 | 100 | -> | Minus |
3L | 6025418..6025629 | 12..226 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:48:15 Download gff for
BS16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6013214..6013262 | 818..866 | 97 | -> | Minus |
arm_3L | 6017731..6017992 | 556..817 | 100 | -> | Minus |
arm_3L | 6018109..6018437 | 227..555 | 100 | -> | Minus |
arm_3L | 6018518..6018729 | 12..226 | 98 | | Minus |
BS16386.5prime Sequence
845 bp (802 high quality bases) assembled on 2007-05-15
> BS16386.5prime
GAAGTTATCAGTCGACATGCCCAAAAGCGAGGCCGCCACAATGATAACCA
ACAATAATTTGGATTATGACCAGGCCAGCGCCAGCAGCACAATAATAGCA
GGAGCTACATCGACGACCGCGGGCACAGCGGCAACATCGGTGGCCATGAG
CAACAGAAATGGCAGCACCAGCAGCAGCAGCAACTCCTCGCCCACGGCGG
ACAATTCCAATTCCAATTCCAACTCGAATTCAAACGCAAATATAAATCGG
AATTTGAATCAGAACCCCAACTCGAACTCCAATACAAACTCCAATTCGTA
TTTCAACCGATTCGACAATCGCATAGCTGCCAACTTGGCTGCCGTTTTAA
CTGGCGCAGGAGCCCGTTTTCGATCCTCCTCCTGCAGCAATCGCCATCCA
GCTGGAGTTGCAAATCCGGCCGTTTTGAGATCACCACTCGCCACAATAAG
CCGCAAGACTAGTCTGGCCACGCCCCCTTCACCAGCGAGTCTAGGACGAC
GCCGCCCACTGCAACTCTTCACGCACGCGAATCTCAATTGCAATGACAAC
GAGAAGGTGGCCCAAACACCAAGCTCCGATGAGGATAATTCGCCCACCGA
ACTAAACAGCTGCAAGCGATTGGCAGACAAACCTCCTCTGGTCAAACGCT
TGACAATGGGCTTGCTGCGCCAAAACGAGGAGTCACGCCCATTGGTGGGC
GACATGACTCCTTTGAGCGCGCCGCTGGACATCCAGCCGGTGTACTCGAA
TGGCTACATCAACGAGGACTCCTACATCGACAGCAAGTTCGGTGACTCGT
GCCGCCNATCCTTGACAGCCATCCCGATGCTGGGGACATGTAACC
BS16386.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32406-PA | 1425 | CG32406-RA | 1..817 | 17..833 | 4066 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-RA | 2919 | CG32406-RA | 805..1621 | 17..833 | 4074 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6019337..6019857 | 17..537 | 2605 | 100 | Plus |
3L | 28110227 | 3L | 6024630..6024823 | 640..833 | 959 | 99.5 | Plus |
3L | 28110227 | 3L | 6020060..6020164 | 538..642 | 525 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 12:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6821 | 81..184 | 215 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6917 | 76..184 | 211 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6863 | 76..187 | 203 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 78..184 | 188 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2412..2546 | 76..216 | 178 | 62 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1241 | 97..278 | 169 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2739..2859 | 70..187 | 147 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2868..3005 | 76..202 | 141 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2367 | 126..184 | 132 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2364 | 121..184 | 122 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6788 | 125..184 | 119 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 129..184 | 115 | 69.6 | Plus |
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 570..649 | 233..309 | 113 | 63.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1097 | 149..184 | 108 | 77.8 | Plus |
BS16386.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:45 Download gff for
BS16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:25 Download gff for
BS16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 800..1633 | 10..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:46 Download gff for
BS16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PVRAP-RA | 800..1633 | 10..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:46 Download gff for
BS16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6019332..6019857 | 10..537 | 99 | -> | Plus |
3L | 6020060..6020162 | 538..640 | 100 | -> | Plus |
3L | 6024631..6024835 | 641..845 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:25 Download gff for
BS16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6012432..6012957 | 10..537 | 99 | -> | Plus |
arm_3L | 6013160..6013262 | 538..640 | 100 | -> | Plus |
arm_3L | 6017731..6017935 | 641..845 | 97 | | Plus |
BS16386.complete Sequence
1457 bp assembled on 2007-05-07
GenBank Submission: FJ638137
> BS16386.complete
GAAGTTATCAGTCGACATGCCCAAAAGCGAGGCCGCCACAATGATAACCA
ACAATAATTTGGATTATGACCAGGCCAGCGCCAGCAGCACAATAATAGCA
GGAGCTACATCGACGACCGCGGGCACAGCGGCAACATCGGTGGCCATGAG
CAACAGAAATGGCAGCACCAGCAGCAGCAGCAACTCCTCGCCCACGGCGG
ACAATTCCAATTCCAATTCCAACTCGAATTCAAACGCAAATATAAATCGG
AATTTGAATCAGAACCCCAACTCGAACTCCAATACAAACTCCAATTCGTA
TTTCAACCGATTCGACAATCGCATAGCTGCCAACTTGGCTGCCGTTTTAA
CTGGCGCAGGAGCCCGTTTTCGATCCTCCTCCTGCAGCAATCGCCATCCA
GCTGGAGTTGCAAATCCGGCCGTTTTGAGATCACCACTCGCCACAATAAG
CCGCAAGACTAGTCTGGCCACGCCCCCTTCACCAGCGAGTCTAGGACGAC
GCCGCCCACTGCAACTCTTCACGCACGCGAATCTCAATTGCAATGACAAC
GAGAAGGTGGCCCAAACACCAAGCTCCGATGAGGATAATTCGCCCACCGA
ACTAAACAGCTGCAAGCGATTGGCAGACAAACCTCCTCTGGTCAAACGCT
TGACAATGGGCTTGCTGCGCCAAAACGAGGAGTCACGCCCATTGGTGGGC
GACATGACTCCTTTGAGCGCGCCGCTGGACATCCAGCCGGTGTACTCGAA
TGGCTACATCAACGAGGACTCCTACATCGACAGCAAGTTCGGTGACTCGT
GCCGCCAATCCTTGACAGCCATCCCGATGCTGGACAATGTTAACCTGAAC
GACAATAACGAGTTCAACCTGAAGAAGCGCTACTTAAGAGAAACGAGCAG
CGCAAATTCCAGTCCGAAAATCTTTGCCAATCGCCTGCGGATGAACCAGG
GTGCCGTTGGCCAGCGATGCAGCAGTTTGGCCAACGCATTCGGTAATGTG
GGATCCGATGAGGAGGATCTCGAGCTGAAGGATGCCTGCTGGTACCAGGC
GGGCATATCCAGGGACATAGCCGTTGAAGTCCTGCAAAGCAAGAGCCCAG
GTGCGTTTCTCGTGCGGAAGAGCAGCTCCAAACCAGGATGCTATGCACTG
ACACTGCGCGTACCCTCGCCACCTGGGCCGAAAATAGCTAACTACATAAT
CCTACGTTCCCCAAGGGGCTACAAAATCAAGGGTTTCCGCAAGGAGTTCT
CCAGCCTGAAGGCCCTGATCACCCACCATTCGGTGATGCCCGAACTGCTG
CCCGTCCCACTGGCCATGCCACGTCCCACCAACATGTCATCTTCGCGGCG
GAATCTCGACGACTTCGATACCTACGATTCGCTGCAGATGCTGCTGAAGT
ATCTGCGTGCCAAGAACATGGAGACGGAGCAGCAGCAGTAGAAGCTTTCT
AGACCAT
BS16386.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-RA | 1425 | CG32406-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
CG33993-RB | 777 | CG33993-PB | 349..647 | 1022..1323 | 260 | 73.2 | Plus |
CG33993-RA | 1266 | CG33993-PA | 838..1136 | 1022..1323 | 260 | 73.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-RA | 2919 | CG32406-RA | 805..2229 | 17..1441 | 7125 | 100 | Plus |
CG33993-RB | 1316 | CG33993-RB | 483..781 | 1022..1323 | 260 | 73.2 | Plus |
CG33993-RA | 2404 | CG33993-RA | 1242..1540 | 1022..1323 | 260 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6019337..6019857 | 17..537 | 2605 | 100 | Plus |
3L | 28110227 | 3L | 6025008..6025338 | 902..1232 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 6024630..6024892 | 640..902 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 6025416..6025627 | 1230..1441 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 6020060..6020164 | 538..642 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5933900..5933967 | 1323..1256 | 205 | 86.8 | Minus |
Blast to na_te.dros performed 2014-11-27 19:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6821 | 81..184 | 215 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6917 | 76..184 | 211 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6863 | 76..187 | 203 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 78..184 | 188 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2412..2546 | 76..216 | 178 | 62 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1241 | 97..278 | 169 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2739..2859 | 70..187 | 147 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2868..3005 | 76..202 | 141 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2367 | 126..184 | 132 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2364 | 121..184 | 122 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6788 | 125..184 | 119 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 129..184 | 115 | 69.6 | Plus |
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 570..649 | 233..309 | 113 | 63.7 | Plus |
BS16386.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:23 Download gff for
BS16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 1..1425 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:42 Download gff for
BS16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 794..2225 | 10..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:26 Download gff for
BS16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 805..2229 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:23 Download gff for
BS16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 794..2225 | 10..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:34 Download gff for
BS16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PVRAP-RA | 805..2229 | 17..1441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:34 Download gff for
BS16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6025418..6025627 | 1232..1441 | 100 | | Plus |
3L | 6019337..6019857 | 17..537 | 100 | -> | Plus |
3L | 6020060..6020162 | 538..640 | 100 | -> | Plus |
3L | 6024631..6024892 | 641..902 | 100 | -> | Plus |
3L | 6025009..6025337 | 903..1231 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:26 Download gff for
BS16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6013160..6013262 | 538..640 | 100 | -> | Plus |
arm_3L | 6012437..6012957 | 17..537 | 100 | -> | Plus |
arm_3L | 6017731..6017992 | 641..902 | 100 | -> | Plus |
arm_3L | 6018109..6018437 | 903..1231 | 100 | -> | Plus |
arm_3L | 6018518..6018727 | 1232..1441 | 100 | | Plus |
BS16386.pep Sequence
Translation from 16 to 1440
> BS16386.pep
MPKSEAATMITNNNLDYDQASASSTIIAGATSTTAGTAATSVAMSNRNGS
TSSSSNSSPTADNSNSNSNSNSNANINRNLNQNPNSNSNTNSNSYFNRFD
NRIAANLAAVLTGAGARFRSSSCSNRHPAGVANPAVLRSPLATISRKTSL
ATPPSPASLGRRRPLQLFTHANLNCNDNEKVAQTPSSDEDNSPTELNSCK
RLADKPPLVKRLTMGLLRQNEESRPLVGDMTPLSAPLDIQPVYSNGYINE
DSYIDSKFGDSCRQSLTAIPMLDNVNLNDNNEFNLKKRYLRETSSANSSP
KIFANRLRMNQGAVGQRCSSLANAFGNVGSDEEDLELKDACWYQAGISRD
IAVEVLQSKSPGAFLVRKSSSKPGCYALTLRVPSPPGPKIANYIILRSPR
GYKIKGFRKEFSSLKALITHHSVMPELLPVPLAMPRPTNMSSSRRNLDDF
DTYDSLQMLLKYLRAKNMETEQQQ*
BS16386.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-PA | 474 | CG32406-PA | 1..474 | 1..474 | 2424 | 100 | Plus |
CG33993-PA | 421 | CG33993-PA | 133..421 | 183..468 | 686 | 51.9 | Plus |
CG33993-PB | 258 | CG33993-PB | 3..258 | 214..468 | 557 | 49.1 | Plus |
CG10479-PA | 378 | CG10479-PA | 238..377 | 331..469 | 241 | 44.1 | Plus |
CG10479-PB | 379 | CG10479-PB | 239..378 | 331..469 | 241 | 44.1 | Plus |