Clone Sequence Records
BS16387.complete Sequence
1913 bp assembled on 2009-12-07
GenBank Submission: KX803967
> BS16387.complete
GAAGTTATCAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCAC
AGCAGCAGCATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCG
CCAGACGGCGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACA
CATAGTTACCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGT
TCCTGGACTATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCC
ATAATGGTGGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGT
AAATCGATATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCG
CCAGCTGCATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATC
ATTACGATCGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCC
GGCCATTGTGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCA
CGGGAATCGCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCG
CTCACGGAGTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAAT
TATCGGCGGCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGAC
CGCTGGAGCTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACT
CCCAAGCTGGCCAAGAAGTCGGCCATTATCGATCAGAACACCACCGCGGC
GGAGCTGGAGCCCCTCAAGGTCCTGCCTAAGGATCAGTACCTGCAGCTGC
CGCAGCGCACGGATACAGCGGTCTCGGGGGGTGCCCTATGCCGGTCCAAC
AGCGTTGGCCACAACCTCAAGCCCAATCTGAACAACAACTCGAACGGCGC
CGTCAATGGACAGGGACCCACCTTGGTGACCCCACCGCAGGCGGTGGTGA
AGAGCACCAGCAACGATGACATCGCCCGCAAATGCCACAGCCAGTTGCAG
CTGACTCCTCTCAGGGATGCGCATCGCGAGCGGAGTGCCAGTGGTACCAT
GTACCGACCGGATGCTCTCTACCAGGGCTCCCTCCACAACCTACCCGACT
ATGTGAGCTCCAGGAACGATCTGAGCCGTTCCATGTCCGGCTCCGGCGTT
ATAAAGCGGTACGGATCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCA
GGAGGAGGCCAAATGCTGTGGCTGCATCACTTGCTCCAAGGAGACCCGCG
ACACATTCGCCGAAATGATGAACTTCTCTCTGCTCAAGGACATGGTGTTC
GTGATCTTCTCCGTGTCTAATTTCTGCACGAGCATTGGCTTCAACGTTCC
GTACCTGTATGTGGTCGCCTACGCGGAGACCCTGAAACTCACCAAGACGG
ATGCCAGCTATCTGATATCCACGATTGGCGTGGCCAACACAGTGGGCCGC
ATAATCCTGGGCTACATATCGGATAAACCGTGGGTGAACCGCCTCCTGGT
CTACAACGTCTGCCTCACCGCCTGCGGAGTTTCCACTGCCATGGTGCCGC
TATGCCACGACTTCCAATCCCTGGCCTTCTACTGCTGCGTCTTTGGCTTC
ACGATCGGCGCCTATGTGGGCCTGACCTCGGTCATTCTGGTGGACCTGTT
GGGACTGGACAAGCTGACCAACGCCTTTGGCCTGCTGCTGCTCTTCCAGG
GTATTGCCAGCTTCATCGGTCCGCCCATCGGAGGCTGGATGTACGACCTG
ACGGACTCGTATGCGCCGGCCTTCCTGATGGCCGGACTCATGATCGCCAT
CAGCGGACTGGTGATGTTCGCCATTCCGCCGCTGCAGCGCCTGCAGGTTC
GCAAGTCGGAGCGAAAGCCCCACACCGAGCACCTGGCCCTTAGTTAGAAG
CTTTCTAGACCAT
BS16387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-RB | 1881 | CG3456-PB | 1..1881 | 17..1897 | 9390 | 99.9 | Plus |
Mct1-RA | 1881 | CG3456-PA | 1..1881 | 17..1897 | 9390 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-RB | 2738 | CG3456-RB | 411..2293 | 15..1897 | 9400 | 99.9 | Plus |
Mct1-RA | 2955 | CG3456-RA | 628..2510 | 15..1897 | 9400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2200004..2200606 | 278..880 | 3000 | 99.8 | Plus |
X | 23542271 | X | 2204103..2204437 | 1198..1532 | 1675 | 100 | Plus |
X | 23542271 | X | 2204509..2204710 | 1533..1734 | 1010 | 100 | Plus |
X | 23542271 | X | 2200674..2200870 | 880..1076 | 985 | 100 | Plus |
X | 23542271 | X | 2204763..2204928 | 1732..1897 | 830 | 100 | Plus |
X | 23542271 | X | 2198800..2198943 | 15..158 | 720 | 100 | Plus |
X | 23542271 | X | 2200933..2201062 | 1073..1202 | 650 | 100 | Plus |
X | 23542271 | X | 2199820..2199940 | 159..279 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:03:34 has no hits.
BS16387.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:04 Download gff for
BS16387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 628..2508 | 17..1897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:47 Download gff for
BS16387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 630..2510 | 17..1897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:11 Download gff for
BS16387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 628..2508 | 17..1897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:04 Download gff for
BS16387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 630..2510 | 17..1897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:04 Download gff for
BS16387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2198802..2198943 | 17..158 | 100 | -> | Plus |
X | 2199820..2199939 | 159..278 | 100 | -> | Plus |
X | 2200005..2200606 | 279..880 | 99 | -> | Plus |
X | 2200675..2200869 | 881..1075 | 100 | -> | Plus |
X | 2200936..2201061 | 1076..1201 | 100 | -> | Plus |
X | 2204107..2204437 | 1202..1532 | 100 | -> | Plus |
X | 2204509..2204709 | 1533..1733 | 100 | -> | Plus |
X | 2204765..2204928 | 1734..1897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:47 Download gff for
BS16387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2092835..2092976 | 17..158 | 100 | -> | Plus |
arm_X | 2093853..2093972 | 159..278 | 100 | -> | Plus |
arm_X | 2094038..2094639 | 279..880 | 99 | -> | Plus |
arm_X | 2094708..2094902 | 881..1075 | 100 | -> | Plus |
arm_X | 2094969..2095094 | 1076..1201 | 100 | -> | Plus |
arm_X | 2098140..2098470 | 1202..1532 | 100 | -> | Plus |
arm_X | 2098542..2098742 | 1533..1733 | 100 | -> | Plus |
arm_X | 2098798..2098961 | 1734..1897 | 100 | | Plus |
BS16387.3prime Sequence
902 bp (822 high quality bases) assembled on 2007-05-15
> BS16387.3prime
ATGGTCTAGAAAGCTTCTAACTAAGGGCCAGGTGCTCGGTGTGGGGCTTT
CGCTCCGACTTGCGAACCTGCAGGCGCTGCAGCGGCGGAATGGCGAACAT
CACCAGTCCGCTGATGGCGATCATGAGTCCGGCCATCAGGAAGGCCGGCG
CATACGAGTCCGTCAGGTCGTACATCCAGCCTCCGATGGGCGGACCGATG
AAGCTGGCAATACCCTGGAAGAGCAGCAGCAGGCCAAAGGCGTTGGTCAG
CTTGTCCAGTCCCAACAGGTCCACCAGAATGACCGAGGTCAGGCCCACAT
AGGCGCCGATCGTGAAGCCAAAGACGCAGCAGTAGAAGGCCAGGGATTGG
AAGTCGTGGCATAGCGGCACCATGGCAGTGGAAACTCCGCAGGCGGTGAG
GCAGACGTTGTAGACCAGGAGGCGGTTCACCCACGGTTTATCCGATATGT
AGCCCAGGATTATGCGGCCCACTGTGTTGGCCACGCCAATCGTGGATATC
AGATAGCTGGCATCCGTCTTGGTGAGTTTCAGGGTCTCCGCGTAGGCGAC
CACATACAGGTACGGAACGTTGAAGCCAATGCTCGTGCAGAAATTAGACA
CGGAGAAGATCACGAACACCATGTCCTTGAGCAGAGAGAAGTTCATCATT
TCGGCGAATGTGTCGCGGGTCTCCTTGGAGCAAGTGATGCAGCCACAGCA
TTTGGCCTCCTCCTGACTCTGGGACACGTTGTTGCTCTGGCGAAGGGATC
CGTACCGCTTTATAACGCCGGAGCCGGACATGGAACGGCTCAGATCGTTC
CTGGAGCTCACATAGTCGGGTAGGTTGTGGAGGGAGCCCTGGTAGAGAGC
ATCCGGTCGGTACATGGTACCACTGCCACTCCGCTCGCGATGCGCATCCC
TG
BS16387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3456-PA | 1881 | Mct1-RA | 996..1881 | 902..17 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-RB | 2738 | CG3456-RB | 1408..2293 | 902..17 | 4415 | 99.9 | Minus |
Mct1-RA | 2955 | CG3456-RA | 1625..2510 | 902..17 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2204103..2204437 | 716..382 | 1675 | 100 | Minus |
X | 23542271 | X | 2204509..2204710 | 381..180 | 1010 | 100 | Minus |
X | 23542271 | X | 2204763..2204928 | 182..17 | 830 | 100 | Minus |
X | 23542271 | X | 2200933..2201062 | 841..712 | 650 | 100 | Minus |
X | 23542271 | X | 2200806..2200870 | 902..838 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:33:39 has no hits.
BS16387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:52 Download gff for
BS16387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3456-PA | 996..1881 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:59 Download gff for
BS16387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 1625..2515 | 11..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:32 Download gff for
BS16387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 1625..2515 | 11..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:32 Download gff for
BS16387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2200806..2200869 | 839..902 | 98 | -> | Minus |
X | 2200936..2201061 | 713..838 | 100 | -> | Minus |
X | 2204107..2204437 | 382..712 | 100 | -> | Minus |
X | 2204509..2204709 | 181..381 | 100 | -> | Minus |
X | 2204765..2204933 | 11..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:59 Download gff for
BS16387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2094969..2095094 | 713..838 | 100 | -> | Minus |
arm_X | 2094839..2094902 | 839..902 | 98 | -> | Minus |
arm_X | 2098140..2098470 | 382..712 | 100 | -> | Minus |
arm_X | 2098542..2098742 | 181..381 | 100 | -> | Minus |
arm_X | 2098798..2098966 | 11..180 | 98 | | Minus |
BS16387.5prime Sequence
763 bp (762 high quality bases) assembled on 2007-05-15
> BS16387.5prime
GAAGTTATCAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCAC
AGCAGCAGCATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCG
CCAGACGGCGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACA
CATAGTTACCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGT
TCCTGGACTATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCC
ATAATGGTGGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGT
AAATCGATATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCG
CCAGCTGCATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATC
ATTACGATCGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCC
GGCCATTGTGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCA
CGGGAATCGCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCG
CTCACGGAGTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAAT
TATCGGCGGCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGAC
CGCTGGAGCTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACT
CCCAAGCTGGCCAAGAAGTCGGCCATTATCGATCAGAACACCACCGCGGC
GGAGCTGGAGCCC
BS16387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3456-PA | 1881 | Mct1-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-RB | 2738 | CG3456-RB | 411..1159 | 15..763 | 3745 | 100 | Plus |
Mct1-RA | 2955 | CG3456-RA | 628..1376 | 15..763 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2200004..2200489 | 278..763 | 2430 | 100 | Plus |
X | 23542271 | X | 2198800..2198943 | 15..158 | 720 | 100 | Plus |
X | 23542271 | X | 2199820..2199940 | 159..279 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:08:05 has no hits.
BS16387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:53 Download gff for
BS16387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3456-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:31 Download gff for
BS16387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 623..1376 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:52 Download gff for
BS16387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 623..1376 | 9..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:52 Download gff for
BS16387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2199820..2199939 | 159..278 | 100 | -> | Plus |
X | 2200005..2200489 | 279..763 | 100 | | Plus |
X | 2198795..2198943 | 9..158 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:31 Download gff for
BS16387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2092828..2092976 | 9..158 | 98 | -> | Plus |
arm_X | 2093853..2093972 | 159..278 | 100 | -> | Plus |
arm_X | 2094038..2094522 | 279..763 | 100 | | Plus |
BS16387.pep Sequence
Translation from 16 to 1896
> BS16387.pep
MVHGPPARRKSQQQHEACEMDMERQPTPPDGGWGWVVVFGSFMIHIVTDG
MTYSFGIFYNEFLDYFNEGKGYTAWIASIMVGVTFSSGPISSSFVNRYGC
RAVTIAGSILAASCIIVSMFAQNVLTLIITIGFGTGLGFGLIYLPAIVSV
TQYFEAKRSLATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGAMLIIGGIV
LNCIIFGAMFRPLELEAPPQTPPNTPSTPKLAKKSAIIDQNTTAAELEPL
KVLPKDQYLQLPQRTDTAVSGGALCRSNSVGHNLKPNLNNNSNGAVNGQG
PTLVTPPQAVVKSTSNDDIARKCHSQLQLTPLRDAHRERSASGTMYRPDA
LYQGSLHNLPDYVSSRNDLSRSMSGSGVIKRYGSLRQSNNVSQSQEEAKC
CGCITCSKETRDTFAEMMNFSLLKDMVFVIFSVSNFCTSIGFNVPYLYVV
AYAETLKLTKTDASYLISTIGVANTVGRIILGYISDKPWVNRLLVYNVCL
TACGVSTAMVPLCHDFQSLAFYCCVFGFTIGAYVGLTSVILVDLLGLDKL
TNAFGLLLLFQGIASFIGPPIGGWMYDLTDSYAPAFLMAGLMIAISGLVM
FAIPPLQRLQVRKSERKPHTEHLALS*
BS16387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-PB | 626 | CG3456-PB | 1..626 | 1..626 | 3268 | 100 | Plus |
Mct1-PA | 626 | CG3456-PA | 1..626 | 1..626 | 3268 | 100 | Plus |
CG8468-PB | 678 | CG8468-PB | 17..671 | 1..616 | 784 | 31.1 | Plus |
CG11665-PB | 658 | CG11665-PB | 42..645 | 21..616 | 647 | 28.1 | Plus |
CG11665-PA | 658 | CG11665-PA | 42..645 | 21..616 | 647 | 28.1 | Plus |