Clone BS16387 Report

Search the DGRC for BS16387

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptMct1-RA
Protein status:BS16387.pep: full length peptide match
Sequenced Size:1913

Clone Sequence Records

BS16387.complete Sequence

1913 bp assembled on 2009-12-07

GenBank Submission: KX803967

> BS16387.complete
GAAGTTATCAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCAC
AGCAGCAGCATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCG
CCAGACGGCGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACA
CATAGTTACCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGT
TCCTGGACTATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCC
ATAATGGTGGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGT
AAATCGATATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCG
CCAGCTGCATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATC
ATTACGATCGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCC
GGCCATTGTGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCA
CGGGAATCGCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCG
CTCACGGAGTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAAT
TATCGGCGGCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGAC
CGCTGGAGCTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACT
CCCAAGCTGGCCAAGAAGTCGGCCATTATCGATCAGAACACCACCGCGGC
GGAGCTGGAGCCCCTCAAGGTCCTGCCTAAGGATCAGTACCTGCAGCTGC
CGCAGCGCACGGATACAGCGGTCTCGGGGGGTGCCCTATGCCGGTCCAAC
AGCGTTGGCCACAACCTCAAGCCCAATCTGAACAACAACTCGAACGGCGC
CGTCAATGGACAGGGACCCACCTTGGTGACCCCACCGCAGGCGGTGGTGA
AGAGCACCAGCAACGATGACATCGCCCGCAAATGCCACAGCCAGTTGCAG
CTGACTCCTCTCAGGGATGCGCATCGCGAGCGGAGTGCCAGTGGTACCAT
GTACCGACCGGATGCTCTCTACCAGGGCTCCCTCCACAACCTACCCGACT
ATGTGAGCTCCAGGAACGATCTGAGCCGTTCCATGTCCGGCTCCGGCGTT
ATAAAGCGGTACGGATCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCA
GGAGGAGGCCAAATGCTGTGGCTGCATCACTTGCTCCAAGGAGACCCGCG
ACACATTCGCCGAAATGATGAACTTCTCTCTGCTCAAGGACATGGTGTTC
GTGATCTTCTCCGTGTCTAATTTCTGCACGAGCATTGGCTTCAACGTTCC
GTACCTGTATGTGGTCGCCTACGCGGAGACCCTGAAACTCACCAAGACGG
ATGCCAGCTATCTGATATCCACGATTGGCGTGGCCAACACAGTGGGCCGC
ATAATCCTGGGCTACATATCGGATAAACCGTGGGTGAACCGCCTCCTGGT
CTACAACGTCTGCCTCACCGCCTGCGGAGTTTCCACTGCCATGGTGCCGC
TATGCCACGACTTCCAATCCCTGGCCTTCTACTGCTGCGTCTTTGGCTTC
ACGATCGGCGCCTATGTGGGCCTGACCTCGGTCATTCTGGTGGACCTGTT
GGGACTGGACAAGCTGACCAACGCCTTTGGCCTGCTGCTGCTCTTCCAGG
GTATTGCCAGCTTCATCGGTCCGCCCATCGGAGGCTGGATGTACGACCTG
ACGGACTCGTATGCGCCGGCCTTCCTGATGGCCGGACTCATGATCGCCAT
CAGCGGACTGGTGATGTTCGCCATTCCGCCGCTGCAGCGCCTGCAGGTTC
GCAAGTCGGAGCGAAAGCCCCACACCGAGCACCTGGCCCTTAGTTAGAAG
CTTTCTAGACCAT

BS16387.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-RB 1881 CG3456-PB 1..1881 17..1897 9390 99.9 Plus
Mct1-RA 1881 CG3456-PA 1..1881 17..1897 9390 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-RB 2738 CG3456-RB 411..2293 15..1897 9400 99.9 Plus
Mct1-RA 2955 CG3456-RA 628..2510 15..1897 9400 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2200004..2200606 278..880 3000 99.8 Plus
X 23542271 X 2204103..2204437 1198..1532 1675 100 Plus
X 23542271 X 2204509..2204710 1533..1734 1010 100 Plus
X 23542271 X 2200674..2200870 880..1076 985 100 Plus
X 23542271 X 2204763..2204928 1732..1897 830 100 Plus
X 23542271 X 2198800..2198943 15..158 720 100 Plus
X 23542271 X 2200933..2201062 1073..1202 650 100 Plus
X 23542271 X 2199820..2199940 159..279 605 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:03:34 has no hits.

BS16387.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:04 Download gff for BS16387.complete
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 628..2508 17..1897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:47 Download gff for BS16387.complete
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 630..2510 17..1897 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:11 Download gff for BS16387.complete
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 628..2508 17..1897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:04 Download gff for BS16387.complete
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 630..2510 17..1897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:04 Download gff for BS16387.complete
Subject Subject Range Query Range Percent Splice Strand
X 2198802..2198943 17..158 100 -> Plus
X 2199820..2199939 159..278 100 -> Plus
X 2200005..2200606 279..880 99 -> Plus
X 2200675..2200869 881..1075 100 -> Plus
X 2200936..2201061 1076..1201 100 -> Plus
X 2204107..2204437 1202..1532 100 -> Plus
X 2204509..2204709 1533..1733 100 -> Plus
X 2204765..2204928 1734..1897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:47 Download gff for BS16387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2092835..2092976 17..158 100 -> Plus
arm_X 2093853..2093972 159..278 100 -> Plus
arm_X 2094038..2094639 279..880 99 -> Plus
arm_X 2094708..2094902 881..1075 100 -> Plus
arm_X 2094969..2095094 1076..1201 100 -> Plus
arm_X 2098140..2098470 1202..1532 100 -> Plus
arm_X 2098542..2098742 1533..1733 100 -> Plus
arm_X 2098798..2098961 1734..1897 100   Plus

BS16387.3prime Sequence

902 bp (822 high quality bases) assembled on 2007-05-15

> BS16387.3prime
ATGGTCTAGAAAGCTTCTAACTAAGGGCCAGGTGCTCGGTGTGGGGCTTT
CGCTCCGACTTGCGAACCTGCAGGCGCTGCAGCGGCGGAATGGCGAACAT
CACCAGTCCGCTGATGGCGATCATGAGTCCGGCCATCAGGAAGGCCGGCG
CATACGAGTCCGTCAGGTCGTACATCCAGCCTCCGATGGGCGGACCGATG
AAGCTGGCAATACCCTGGAAGAGCAGCAGCAGGCCAAAGGCGTTGGTCAG
CTTGTCCAGTCCCAACAGGTCCACCAGAATGACCGAGGTCAGGCCCACAT
AGGCGCCGATCGTGAAGCCAAAGACGCAGCAGTAGAAGGCCAGGGATTGG
AAGTCGTGGCATAGCGGCACCATGGCAGTGGAAACTCCGCAGGCGGTGAG
GCAGACGTTGTAGACCAGGAGGCGGTTCACCCACGGTTTATCCGATATGT
AGCCCAGGATTATGCGGCCCACTGTGTTGGCCACGCCAATCGTGGATATC
AGATAGCTGGCATCCGTCTTGGTGAGTTTCAGGGTCTCCGCGTAGGCGAC
CACATACAGGTACGGAACGTTGAAGCCAATGCTCGTGCAGAAATTAGACA
CGGAGAAGATCACGAACACCATGTCCTTGAGCAGAGAGAAGTTCATCATT
TCGGCGAATGTGTCGCGGGTCTCCTTGGAGCAAGTGATGCAGCCACAGCA
TTTGGCCTCCTCCTGACTCTGGGACACGTTGTTGCTCTGGCGAAGGGATC
CGTACCGCTTTATAACGCCGGAGCCGGACATGGAACGGCTCAGATCGTTC
CTGGAGCTCACATAGTCGGGTAGGTTGTGGAGGGAGCCCTGGTAGAGAGC
ATCCGGTCGGTACATGGTACCACTGCCACTCCGCTCGCGATGCGCATCCC
TG

BS16387.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3456-PA 1881 Mct1-RA 996..1881 902..17 4405 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-RB 2738 CG3456-RB 1408..2293 902..17 4415 99.9 Minus
Mct1-RA 2955 CG3456-RA 1625..2510 902..17 4415 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2204103..2204437 716..382 1675 100 Minus
X 23542271 X 2204509..2204710 381..180 1010 100 Minus
X 23542271 X 2204763..2204928 182..17 830 100 Minus
X 23542271 X 2200933..2201062 841..712 650 100 Minus
X 23542271 X 2200806..2200870 902..838 310 98.5 Minus
Blast to na_te.dros performed on 2015-02-12 10:33:39 has no hits.

BS16387.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:52 Download gff for BS16387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3456-PA 996..1881 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:59 Download gff for BS16387.3prime
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 1625..2515 11..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:32 Download gff for BS16387.3prime
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 1625..2515 11..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:32 Download gff for BS16387.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2200806..2200869 839..902 98 -> Minus
X 2200936..2201061 713..838 100 -> Minus
X 2204107..2204437 382..712 100 -> Minus
X 2204509..2204709 181..381 100 -> Minus
X 2204765..2204933 11..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:59 Download gff for BS16387.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2094969..2095094 713..838 100 -> Minus
arm_X 2094839..2094902 839..902 98 -> Minus
arm_X 2098140..2098470 382..712 100 -> Minus
arm_X 2098542..2098742 181..381 100 -> Minus
arm_X 2098798..2098966 11..180 98   Minus

BS16387.5prime Sequence

763 bp (762 high quality bases) assembled on 2007-05-15

> BS16387.5prime
GAAGTTATCAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCAC
AGCAGCAGCATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCG
CCAGACGGCGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACA
CATAGTTACCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGT
TCCTGGACTATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCC
ATAATGGTGGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGT
AAATCGATATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCG
CCAGCTGCATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATC
ATTACGATCGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCC
GGCCATTGTGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCA
CGGGAATCGCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCG
CTCACGGAGTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAAT
TATCGGCGGCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGAC
CGCTGGAGCTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACT
CCCAAGCTGGCCAAGAAGTCGGCCATTATCGATCAGAACACCACCGCGGC
GGAGCTGGAGCCC

BS16387.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3456-PA 1881 Mct1-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-RB 2738 CG3456-RB 411..1159 15..763 3745 100 Plus
Mct1-RA 2955 CG3456-RA 628..1376 15..763 3745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2200004..2200489 278..763 2430 100 Plus
X 23542271 X 2198800..2198943 15..158 720 100 Plus
X 23542271 X 2199820..2199940 159..279 605 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:08:05 has no hits.

BS16387.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:53 Download gff for BS16387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3456-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:31 Download gff for BS16387.5prime
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 623..1376 9..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:52 Download gff for BS16387.5prime
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 623..1376 9..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:52 Download gff for BS16387.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2199820..2199939 159..278 100 -> Plus
X 2200005..2200489 279..763 100   Plus
X 2198795..2198943 9..158 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:31 Download gff for BS16387.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2092828..2092976 9..158 98 -> Plus
arm_X 2093853..2093972 159..278 100 -> Plus
arm_X 2094038..2094522 279..763 100   Plus

BS16387.pep Sequence

Translation from 16 to 1896

> BS16387.pep
MVHGPPARRKSQQQHEACEMDMERQPTPPDGGWGWVVVFGSFMIHIVTDG
MTYSFGIFYNEFLDYFNEGKGYTAWIASIMVGVTFSSGPISSSFVNRYGC
RAVTIAGSILAASCIIVSMFAQNVLTLIITIGFGTGLGFGLIYLPAIVSV
TQYFEAKRSLATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGAMLIIGGIV
LNCIIFGAMFRPLELEAPPQTPPNTPSTPKLAKKSAIIDQNTTAAELEPL
KVLPKDQYLQLPQRTDTAVSGGALCRSNSVGHNLKPNLNNNSNGAVNGQG
PTLVTPPQAVVKSTSNDDIARKCHSQLQLTPLRDAHRERSASGTMYRPDA
LYQGSLHNLPDYVSSRNDLSRSMSGSGVIKRYGSLRQSNNVSQSQEEAKC
CGCITCSKETRDTFAEMMNFSLLKDMVFVIFSVSNFCTSIGFNVPYLYVV
AYAETLKLTKTDASYLISTIGVANTVGRIILGYISDKPWVNRLLVYNVCL
TACGVSTAMVPLCHDFQSLAFYCCVFGFTIGAYVGLTSVILVDLLGLDKL
TNAFGLLLLFQGIASFIGPPIGGWMYDLTDSYAPAFLMAGLMIAISGLVM
FAIPPLQRLQVRKSERKPHTEHLALS*

BS16387.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-PB 626 CG3456-PB 1..626 1..626 3268 100 Plus
Mct1-PA 626 CG3456-PA 1..626 1..626 3268 100 Plus
CG8468-PB 678 CG8468-PB 17..671 1..616 784 31.1 Plus
CG11665-PB 658 CG11665-PB 42..645 21..616 647 28.1 Plus
CG11665-PA 658 CG11665-PA 42..645 21..616 647 28.1 Plus