Clone Sequence Records
BS16392.3prime Sequence
872 bp (798 high quality bases) assembled on 2007-05-15
> BS16392.3prime
ATGGTCTAGAAAGCTTTTACGCCTTGCGTCTGATGCCGATCAGGCAGAGC
ACGAAGAAGATGATCGTCCAGCCGGCCATGACCAGGAAACCATTGTAGAC
CTTCTCATGGGTGATGCTCCAACCCTTCTCGATCACATTTCGAGCGGAGA
TGGAGGGAATGGTGAAGGGTAGCACCATCACTAGATCCTGCAGAAACTGC
GGCATGCTCTCCAAAGGCCACAGCAGTCCACACAGTATGATCATGGGATA
AAAAGCACCAGTAGCAACAAAGTTTGCCTCTGTATGCGATTTGCAAAATA
CGGATATGAAGAGACCGAACAACATGCCACAAAATGCGGTCAGTGTTAGC
AATCCAATGAGCGTTGTGGTATCCCCATTATTGTAAGTATCGAACACTAG
GCCAATATACATAATAACCTCGAACGACTGCAGGGCCATGATGATGAGCT
GGGTTAGAAGATGAGCCCACAGCATTTCGGTGGCCGAGACACCTGCCAAT
AGAGTTCGATCCCAGATGCCATCCATGCGTTCAGAAATGAACACTGCAGC
CGTCATCAAAGTGGCCAGGAAGAAGACCATGGTCATTACCACTCCTGGGG
CACAGTACTGCTGGAACTCGATGTCCGTGCTGCCAAAGATTGGTTCCTGG
AACTGGACGGGCAGATCTACAATGGCCGTAGATACATTGCAGTCCTTGAC
AACACTGCGCATGAATGTACTGAACTTGTCACGAAGTTTGCGCTGCATGA
AGTACGCAACTTGTTGATCCGTCATATCGATGTGGATACTAAGCTCGGCG
TGGTCCACAGCTCCGTCACTGGAGTGGATGCCATCCTCCATTTACGAGAG
AATCGAATCGCTGAAGTTCTGG
BS16392.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11147-PA | 2136 | CG11147-RA | 1281..2136 | 872..17 | 4230 | 99.7 | Minus |
| CG11147-PB | 2136 | CG11147-RB | 1281..2136 | 872..17 | 4230 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11147-RB | 2898 | CG11147-RB | 1589..2444 | 872..17 | 4250 | 99.8 | Minus |
| CG11147-RA | 3025 | CG11147-RA | 1716..2571 | 872..17 | 4250 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5734556..5734823 | 314..581 | 1340 | 100 | Plus |
| 2L | 23513712 | 2L | 5734129..5734341 | 17..229 | 1065 | 100 | Plus |
| 2L | 23513712 | 2L | 5735060..5735247 | 582..769 | 940 | 100 | Plus |
| 2L | 23513712 | 2L | 5735299..5735402 | 769..872 | 490 | 98.1 | Plus |
| 2L | 23513712 | 2L | 5734406..5734494 | 228..316 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:12:02 has no hits.
BS16392.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:48 Download gff for
BS16392.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-PB | 1281..2136 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:20 Download gff for
BS16392.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-RA | 1716..2574 | 10..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:45 Download gff for
BS16392.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-RA | 1716..2574 | 10..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:45 Download gff for
BS16392.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5734133..5734340 | 21..228 | 100 | <- | Plus |
| 2L | 5734407..5734493 | 229..315 | 100 | <- | Plus |
| 2L | 5734558..5734823 | 316..581 | 100 | <- | Plus |
| 2L | 5735060..5735246 | 582..768 | 100 | <- | Plus |
| 2L | 5735299..5735402 | 769..872 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:20 Download gff for
BS16392.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5734133..5734340 | 21..228 | 100 | <- | Plus |
| arm_2L | 5734407..5734493 | 229..315 | 100 | <- | Plus |
| arm_2L | 5734558..5734823 | 316..581 | 100 | <- | Plus |
| arm_2L | 5735060..5735246 | 582..768 | 100 | <- | Plus |
| arm_2L | 5735299..5735402 | 769..872 | 98 | | Plus |
BS16392.5prime Sequence
879 bp (770 high quality bases) assembled on 2007-05-15
> BS16392.5prime
GAAGTTATCAGTCGACATGGCGGCCGTTGAGGTACGGAATGGCTATAAGT
ACTATGGCTCCAAATCAAATCCCAAGATTGTGCTTAACCAGCTGAATATG
AACGTGATGCGTGGTTCTATATACGGATTGCTGGGTGCCTCCGGATGCGG
AAAGACAACCCTGCTCTCTTGCATCGTCGGCCAGAGGCGCCTCAACGGCG
GCGAGGTCGTCGTGCTTGGGGCCAAGCCAGGAGAGCCTGGTAGCGGCGTG
CCAGGATCCCGGGTGGGATTCATGCCCCAGGAGATTGCCCTGGTCGAGGA
GATGACCGTCAAGGAGACAATCTTCTACTTCGGTCGCATCTACGGCCTGA
CAGACGAACGCATCCGGGAGAAGTTCAAGCTGCTCAAGGAGCTGCTGCAA
CTGCCACCGGCTAGGCAGATGATCAAGCAGTGCAGCGGTGGACAGCAGCG
ACGCTTGTCCTTCGCCTGCGCCATGATCCACGATCCGGAGCTTCTCATTC
TGGACGAGCCCACTGTGGGATTGGATCCAATGCTGCGTGAAAAAATCTGG
GACTTTCTCGTGGAGACGACGAGGAATAGCAAATTGGCTGTGATTATAAC
CACCCATTACATAGAGGAAGCCAAACAGGCAAATTGTATTGGTCTTATGC
GCAATGGTGTTCTATTGGCTGAGGATACTCCTACCAACATCATGATCAAG
TTCGGAACTCAGTCGATCGAGGACGCCTTCCTCATTCTGAGCCAGCGGCA
GGGCAACGAAGATGAGTTGGCCCAAATCATGGATCACAATAAGAATCAGG
CTTTGCCGGCAGCTGTGCTGCCCCCTGANGTAATAGACACACACGAGCCC
CACATGCCGGAAAAACAGCCCATCCCGTT
BS16392.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11147-PA | 2136 | CG11147-RA | 1..863 | 17..879 | 4271 | 99.7 | Plus |
| CG11147-PB | 2136 | CG11147-RB | 1..863 | 17..879 | 4271 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11147-RB | 2898 | CG11147-RB | 309..1171 | 17..879 | 4289 | 99.8 | Plus |
| CG11147-RA | 3025 | CG11147-RA | 436..1298 | 17..879 | 4289 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5736339..5736761 | 543..121 | 2115 | 100 | Minus |
| 2L | 23513712 | 2L | 5735876..5736117 | 879..638 | 1184 | 99.2 | Minus |
| 2L | 23513712 | 2L | 5736821..5736924 | 120..17 | 520 | 100 | Minus |
| 2L | 23513712 | 2L | 5736182..5736275 | 637..544 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:08:57 has no hits.
BS16392.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:49 Download gff for
BS16392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-PB | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:37:10 Download gff for
BS16392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-RA | 429..1298 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:58 Download gff for
BS16392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-RA | 429..1298 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:58 Download gff for
BS16392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5735876..5736117 | 638..879 | 99 | <- | Minus |
| 2L | 5736182..5736275 | 544..637 | 100 | <- | Minus |
| 2L | 5736339..5736761 | 121..543 | 100 | <- | Minus |
| 2L | 5736821..5736929 | 9..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:37:10 Download gff for
BS16392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5735876..5736117 | 638..879 | 99 | <- | Minus |
| arm_2L | 5736182..5736275 | 544..637 | 100 | <- | Minus |
| arm_2L | 5736339..5736761 | 121..543 | 100 | <- | Minus |
| arm_2L | 5736821..5736929 | 9..120 | 96 | | Minus |
BS16392.complete Sequence
2168 bp assembled on 2009-12-07
GenBank Submission: KX802937
> BS16392.complete
GAAGTTATCAGTCGACATGGCGGCCGTTGAGGTACGGAATGGCTATAAGT
ACTATGGCTCCAAATCAAATCCCAAGATTGTGCTTAACCAGCTGAATATG
AACGTGATGCGTGGTTCTATATACGGATTGCTGGGTGCCTCCGGATGCGG
AAAGACAACCCTGCTCTCTTGCATCGTCGGCCAGAGGCGCCTCAACGGCG
GCGAGGTCGTCGTGCTTGGGGCCAAGCCAGGAGAGCCTGGTAGCGGCGTG
CCAGGATCCCGGGTGGGATTCATGCCCCAGGAGATTGCCCTGGTCGAGGA
GATGACCGTCAAGGAGACAATCTTCTACTTCGGTCGCATCTACGGCCTGA
CAGACGAACGCATCCGGGAGAAGTTCAAGCTGCTCAAGGAGCTGCTGCAA
CTGCCACCGGCTAGGCAGATGATCAAGCAGTGCAGCGGTGGACAGCAGCG
ACGCTTGTCCTTCGCCTGCGCCATGATCCACGATCCGGAGCTTCTCATTC
TGGACGAGCCCACTGTGGGATTGGATCCAATGCTGCGTGAAAAAATCTGG
GACTTTCTCGTGGAGACGACGAGGAATAGCAAATTGGCTGTGATTATAAC
CACCCATTACATAGAGGAAGCCAAACAGGCAAATTGTATTGGTCTTATGC
GCAATGGTGTTCTATTGGCTGAGGATACTCCTACCAACATCATGATCAAG
TTCGGAACTCAGTCGATCGAGGACGCCTTCCTCATTCTGAGCCAGCGGCA
GGGCAACGAAGATGAGTTGGCCCAAATCATGGATCACAATAAGAATCAGG
CTTTGCCGGCAGCTGTGCTGCCCCCTGAGGTAATAGACACACACGAGCCC
AACATGCCGGAAAAACAGCCCATCCCGTTCGAGGAGCCCCTAAACGAGAA
TCGCAAAAAGATTTTCTTCACCACCAAGGGCAGGGTAAAGGCACTGATGA
CAAAGAACTTTGTACAACTCTTTAGACAACCCTCGGGAATTATTTTCATG
CTACTATTTCCCATCATACAACTGACGTGCTTTTATCTGGCCATTGGCAA
GACGCCCACGAATCTTGAAATAGGAGTTTATTCCGGCGAAGTGGAGAACT
ATGGGGAGTGCTTTGATGAAAACCTGGTCACAGTCTACAAGGATAGCGAC
AACGAGAGCTGTCTATTCAACAAGTTATCCTGCAGATACATACGCGTGTT
GGGTGACGATGTGGCCACGCGGAAATACTATGCCAGCGAAGCAGATGCTC
TGAACGATGCAAAGCGGGCCACAACCGTTGGCTATTTGCACTTTGCCCAG
AACTTCAGCGATTCGATTCTCTCGGTAATGGAGGATGGCATCCACTCCAG
TGACGGAGCTGTGGACCACGCCGAGCTTAGTATCCACATCGATATGACGG
ATCAACAAGTTGCGTACTTCATGCAGCGCAAACTTCGTGACAAGTTCAGT
ACATTCATGCGCAGTGTTGTCAAGGACTGCAATGTATCTACGGCCATTGT
AGATCTGCCCGTCCAGTTCCAGGAACCAATCTTTGGCAGCACGGACATCG
AGTTCCAGCAGTACTGTGCCCCAGGAGTGGTAATGACCATGGTCTTCTTC
CTGGCCACTTTGATGACGGCTGCAGTGTTCATTTCTGAACGCATGGATGG
CATCTGGGATCGAACTCTATTGGCAGGTGTCTCGGCCACCGAAATGCTGT
GGGCTCATCTTCTAACCCAGCTCATCATCATGGCCCTGCAGTCGTTCGAG
GTTATTATGTATATTGGCCTAGTGTTCGATACTTACAATAATGGGGATAC
CACAACGCTCATTGGATTGCTAACACTGACCGCATTTTGTGGCATGTTGT
TCGGTCTCTTCATATCCGTATTTTGCAAATCGCATACAGAGGCAAACTTT
GTTGCTACTGGTGCTTTTTATCCCATGATCATACTGTGTGGACTGCTGTG
GCCTTTGGAGAGCATGCCGCAGTTTCTGCAGGATCTAGTGATGGTGCTAC
CCTTCACCATTCCCTCCATCTCCGCTCGAAATGTGATCGAGAAGGGTTGG
AGCATCACCCATGAGAAGGTCTACAATGGTTTCCTGGTCATGGCCGGCTG
GACGATCATCTTCTTCGTGCTCTGCCTGATCGGCATCAGACGCAAGGCGT
AAAAGCTTTCTAGACCAT
BS16392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11147-RB | 2136 | CG11147-PB | 1..2136 | 17..2152 | 10680 | 100 | Plus |
| CG11147-RA | 2136 | CG11147-PA | 1..2136 | 17..2152 | 10680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11147-RB | 2898 | CG11147-RB | 309..2444 | 17..2152 | 10680 | 100 | Plus |
| CG11147-RA | 3025 | CG11147-RA | 436..2571 | 17..2152 | 10680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5736339..5736761 | 543..121 | 2115 | 100 | Minus |
| 2L | 23513712 | 2L | 5735299..5735714 | 1400..985 | 2080 | 100 | Minus |
| 2L | 23513712 | 2L | 5735770..5736117 | 985..638 | 1740 | 100 | Minus |
| 2L | 23513712 | 2L | 5734556..5734823 | 1855..1588 | 1340 | 100 | Minus |
| 2L | 23513712 | 2L | 5734129..5734341 | 2152..1940 | 1065 | 100 | Minus |
| 2L | 23513712 | 2L | 5735060..5735247 | 1587..1400 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 5736821..5736924 | 120..17 | 520 | 100 | Minus |
| 2L | 23513712 | 2L | 5736182..5736275 | 637..544 | 470 | 100 | Minus |
| 2L | 23513712 | 2L | 5734406..5734494 | 1941..1853 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:13:35 has no hits.
BS16392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:08 Download gff for
BS16392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-RB | 441..2574 | 17..2150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:04 Download gff for
BS16392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-RA | 436..2569 | 17..2150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:01 Download gff for
BS16392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-RB | 441..2574 | 17..2150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:45 Download gff for
BS16392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11147-RA | 436..2569 | 17..2150 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:45 Download gff for
BS16392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5734558..5734823 | 1588..1853 | 100 | <- | Minus |
| 2L | 5735060..5735246 | 1401..1587 | 100 | <- | Minus |
| 2L | 5734131..5734340 | 1941..2150 | 100 | <- | Minus |
| 2L | 5734407..5734493 | 1854..1940 | 100 | <- | Minus |
| 2L | 5735299..5735714 | 985..1400 | 100 | <- | Minus |
| 2L | 5735771..5736117 | 638..984 | 100 | <- | Minus |
| 2L | 5736182..5736275 | 544..637 | 100 | <- | Minus |
| 2L | 5736339..5736761 | 121..543 | 100 | <- | Minus |
| 2L | 5736821..5736924 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:04 Download gff for
BS16392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5735060..5735246 | 1401..1587 | 100 | <- | Minus |
| arm_2L | 5734131..5734340 | 1941..2150 | 100 | <- | Minus |
| arm_2L | 5734407..5734493 | 1854..1940 | 100 | <- | Minus |
| arm_2L | 5734558..5734823 | 1588..1853 | 100 | <- | Minus |
| arm_2L | 5735299..5735714 | 985..1400 | 100 | <- | Minus |
| arm_2L | 5735771..5736117 | 638..984 | 100 | <- | Minus |
| arm_2L | 5736182..5736275 | 544..637 | 100 | <- | Minus |
| arm_2L | 5736339..5736761 | 121..543 | 100 | <- | Minus |
| arm_2L | 5736821..5736924 | 17..120 | 100 | | Minus |
BS16392.pep Sequence
Translation from 16 to 2151
> BS16392.pep
MAAVEVRNGYKYYGSKSNPKIVLNQLNMNVMRGSIYGLLGASGCGKTTLL
SCIVGQRRLNGGEVVVLGAKPGEPGSGVPGSRVGFMPQEIALVEEMTVKE
TIFYFGRIYGLTDERIREKFKLLKELLQLPPARQMIKQCSGGQQRRLSFA
CAMIHDPELLILDEPTVGLDPMLREKIWDFLVETTRNSKLAVIITTHYIE
EAKQANCIGLMRNGVLLAEDTPTNIMIKFGTQSIEDAFLILSQRQGNEDE
LAQIMDHNKNQALPAAVLPPEVIDTHEPNMPEKQPIPFEEPLNENRKKIF
FTTKGRVKALMTKNFVQLFRQPSGIIFMLLFPIIQLTCFYLAIGKTPTNL
EIGVYSGEVENYGECFDENLVTVYKDSDNESCLFNKLSCRYIRVLGDDVA
TRKYYASEADALNDAKRATTVGYLHFAQNFSDSILSVMEDGIHSSDGAVD
HAELSIHIDMTDQQVAYFMQRKLRDKFSTFMRSVVKDCNVSTAIVDLPVQ
FQEPIFGSTDIEFQQYCAPGVVMTMVFFLATLMTAAVFISERMDGIWDRT
LLAGVSATEMLWAHLLTQLIIMALQSFEVIMYIGLVFDTYNNGDTTTLIG
LLTLTAFCGMLFGLFISVFCKSHTEANFVATGAFYPMIILCGLLWPLESM
PQFLQDLVMVLPFTIPSISARNVIEKGWSITHEKVYNGFLVMAGWTIIFF
VLCLIGIRRKA*
BS16392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11147-PB | 711 | CG11147-PB | 1..711 | 1..711 | 3678 | 100 | Plus |
| CG11147-PA | 711 | CG11147-PA | 1..711 | 1..711 | 3678 | 100 | Plus |
| CG9990-PD | 763 | CG9990-PD | 41..761 | 2..710 | 1447 | 40 | Plus |
| CG9990-PG | 764 | CG9990-PG | 30..762 | 2..710 | 1441 | 39.1 | Plus |
| CG9990-PF | 775 | CG9990-PF | 41..773 | 2..710 | 1441 | 39.1 | Plus |
