Clone Sequence Records
BS16394.complete Sequence
2270 bp assembled on 2009-12-08
GenBank Submission: KX802435
> BS16394.complete
GAAGTTATCAGTCGACATGGCTTATATTTTGAAGGCCACCAAATGTCCCA
CGGACGAGCTTTCGCTGACCAATCGGGCTATAGTGAATGTTGGTGATTTT
CCGGAGGAAATCAAATATGCGGACATATCGCCGGCTCCGGGTCAGCACTT
CATCTTTGCGCTGGAGAAAACGGTGGAGGTGCCCAGCGGCTATGTTGGCT
TCTCCCTGGTCCAACGAAAGTGGGCCATGGTGTCCATTAATCAGGAACTG
GAGGTTCGTCCCTATCGCTTTGATGCCAGCTCGGATGTCATCACTTGTGT
GTCCTTTGAGACGGACTTTCTGCAGAAGAAGACTGTCTCCCAGGAACCCT
ATGACTCCGATCAAATGGCCAAGGAGTTCATCATGCAATTCGCCGGAATG
GCACTCACCGTTGGCCAATCACTGGTCTTCAATTTCAAGGACAAGAAACT
TCTCGGCCTGGCCGTCAAATCCCTAGAGGCCATCGATCCCAAGAGCTTGG
GCGAGGGCAAGGACACCGCGATGCGTAATGTCCGCTTCGGCCGCATCCTT
GGCAACACCGTGGTGCAGTTCGAGAAGGCCGAGAACAGTTCGCTGAATCT
GCAGGGCAAGAGCAAGGGCAAGGTGGTCCGCCAGTCCATTATAAACCCGG
ATTGGGACTTTGGCAAAATGGGCATCGGTGGCCTGGACAAGGAATTCAAT
TCGATATTTCGACGAGCCTTCGCATCCCGTGTCTTCCCACCGGAACTGGT
CGAGCAGCTGGGCTGCAAGCATGTCAAGGGCATTCTACTTTATGGTCCAC
CGGGTACGGGCAAAACTCTGATGGCTCGCCAAATCGGAACTATGTTAAAC
GCCCGGGAGCCGAAAATCGTCAACGGTCCACAGATCCTGGACAAGTACGT
GGGCGAATCGGAGGCCAATGTCCGGCGTCTGTTTGCCGAGGCGGAGGAGG
AGGAGAAACGCCTAGGTCCCAACAGTGGACTACATATCATCATCTTCGAC
GAGATCGATGCCATTTGCAAGCAGCGTGGCTCCGTGGCCGGAAATAGTGG
TGTCCACGACACCGTCGTCAATCAGTTGCTAACCAAAATCGATGGCGTTG
ATCAGCTGAACAACATTCTCGTTATCGGCATGACCAATCGCAGGGACATG
ATCGATGAGGCTTTGCTGCGACCGGGTCGCCTCGAGGTCCAAATGGAGAT
CAGCCTGCCCAACGAGCAGGGTCGCGTCCAGATTCTCAATATCCACACCA
AGCGGATGCGTGAATTCAACAAGATTAACGACGATGTGGACAACAAGGAG
ATCGCTGCGCTGACCAAGAATTTCAGCGGTGCCGAGCTGGAGGGTTTGGT
CCGTGCCGCCCAGTCGAGTGCCATGAACCGACTGATCAAGGCCGATGCCA
AGGTGACCGTTGATCCTGAGGCCATGGAAAAGTTAAAGGTCAATCGAGAT
GATTTCCTGCACTCGCTGGAGCATGACATTAAGCCGGCATTCGGTACGGC
CCAGGAGATTCTCGACAATATGCTGGCCCGCGGTGTTATCAACTGGGGAG
CACCGGTTAGCAATCTCCTCGAGGACGGCATGCTGTATGTGCAGCAGGCC
AAGGCTCCAGAATCTAGCGGCTTGGTCTCCGTACTCGTGGCCGGAGCACC
CAACTCTGGCAAGACGGCACTGGCCGCTCAGCTTGCCAAGATGTCAGACT
TTCCGTTCGTGAAGGTCTGCTCGCCAGAGGACATGGTCGGCTACACTGAA
TCGGCCAAGTGCCTGCACATTCGTAAGATCTTCGACGACGCGTATCGTTC
CATGCTTAGCTGCATTGTGGTGGACAATGTGGAGCGTCTGCTGGACTACG
GATCGATTGGGCCGCGATATTCCAATATGACGCTACAGGCACTGCTGGTG
CTGCTCAAGAAACAGCCGCCAAAGGGCCGCAAATTGCTCATATTGTGCAC
ATCTAGCAGGAGGGAGGTCCTGGAAGAGATGGAGATGCTGACGGCCTTCA
CCTCGGTGCTCCACGTGCCCAATCTTTCCAAGCCCGACCACGTTCTGGCC
GTGCTGGAGAACACGGATATCTTTAGCAAGGGCGAAATCCAGGCGATTGG
CAAGAAGATGGCCGGAAAACGTGTGTTTATTGGCATCAAGAAGCTGCTGG
GTCTCATTGACATGGCTAGGCAAACGGAGCAATCACAGCGGGCCATAAAG
TTCCTGTCCAAGATGGAAGAGGAGGGTGGTCTCGACATGGTGGCGCGGCA
GTAAAAGCTTTCTAGACCAT
BS16394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comt-RB | 2238 | CG1618-PB | 1..2238 | 17..2254 | 11160 | 99.9 | Plus |
comt-RA | 2238 | CG1618-PA | 1..2238 | 17..2254 | 11160 | 99.9 | Plus |
Nsf2-RC | 2259 | CG33101-PC | 36..2239 | 40..2240 | 3375 | 77.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comt-RB | 3024 | CG1618-RB | 226..2463 | 17..2254 | 11160 | 99.9 | Plus |
comt-RA | 3087 | CG1618-RA | 226..2463 | 17..2254 | 11160 | 99.9 | Plus |
Nsf2-RC | 3521 | CG33101-RC | 115..2318 | 40..2240 | 3375 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13259795..13261424 | 334..1963 | 8135 | 99.9 | Plus |
3R | 32079331 | 3R | 13835775..13836643 | 1404..536 | 2020 | 82.2 | Minus |
X | 23542271 | X | 13259503..13259721 | 115..333 | 1095 | 100 | Plus |
3R | 32079331 | 3R | 13834700..13835465 | 2240..1475 | 935 | 74.8 | Minus |
X | 23542271 | X | 13261503..13261663 | 1961..2121 | 805 | 100 | Plus |
X | 23542271 | X | 13261733..13261864 | 2123..2254 | 660 | 100 | Plus |
3R | 32079331 | 3R | 13837382..13837702 | 429..115 | 490 | 77.6 | Minus |
X | 23542271 | X | 13259336..13259429 | 26..119 | 455 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:52:38 has no hits.
BS16394.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:36 Download gff for
BS16394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comt-RA | 252..2487 | 17..2252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:16 Download gff for
BS16394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comt-RA | 226..2461 | 17..2252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:54 Download gff for
BS16394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comt-RA | 252..2487 | 17..2252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:57 Download gff for
BS16394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comt-RA | 226..2461 | 17..2252 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:57 Download gff for
BS16394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13259333..13259424 | 23..114 | 98 | -> | Plus |
X | 13259503..13259721 | 115..333 | 100 | -> | Plus |
X | 13259795..13261423 | 334..1962 | 99 | -> | Plus |
X | 13261505..13261663 | 1963..2121 | 100 | -> | Plus |
X | 13261732..13261862 | 2122..2252 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:16 Download gff for
BS16394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13155765..13155895 | 2122..2252 | 99 | | Plus |
arm_X | 13155538..13155696 | 1963..2121 | 100 | -> | Plus |
arm_X | 13153366..13153457 | 23..114 | 98 | -> | Plus |
arm_X | 13153536..13153754 | 115..333 | 100 | -> | Plus |
arm_X | 13153828..13155456 | 334..1962 | 99 | -> | Plus |
BS16394.3prime Sequence
906 bp (812 high quality bases) assembled on 2007-05-15
> BS16394.3prime
ATGGTCTAGAAAGCTTTTACTGCCGCGCCACCATGTCGAGACCACCCTCC
TCTTCCATCTTGGACAGGAACTTTATGGCCCGCTGTGATTGCTCCGTTTG
CCTAGCCATGTCAATGAGACCCAGCAGCTTCTTGATGCCAATAAACACAC
GTTTTCCGGCCATCTTCTTGCCAATCGCCTGGATTTCGCCCTTGCTAAAG
ATATCCGTGTTCTCCAGCACGGCCAGAACGTGGTCGGGCTTGGAAAGATT
GGGCACGTGGAGCACCGAGGTGAAGGCCGTCAGCATCTCCATCTCTTCCA
GGACCTCCCTCCTGCTAGATGTGCACAATATGAGCAATTTGCGGCCCTTT
GGCGGCTGTTTCTTGAGCAGCACCAGCAGTGCCTGTAGCGTCATATTGGA
ATATCGCGGCCCAATCGATCCGTAGTCCAGCAGACGCTCCACATTGTCCA
CCACAATGCAGCTAAGCATGGAACGATACGCGTCGTCGAAGATCTTACGA
ATGTGCAGGCACTTGGCCGATTCAGTGTAGCCGACCATGTCCTCTGGCGA
GCAGACCTTCACGAACGGAAAGTCTGACATCTTGGCAAGCTGAGCGGCCA
GTGCCGTCTTGCCAGAGTTGGGTGCTCCGGCCACGAGTACGGAGACCAAG
CCGCTAGATTCTGGAGCCTTGGCCTGCTGCACATACAGCATGCCGTCCTC
GAGGAGATTGCTAACCGGTGCTCCCCAGTTGATAACACCGCGGGCCAGCA
TATTGTCGAGAATCTCCTGNGCCGTACCGAATGCCGGCTTAATGTCATGC
TCCAGCGAGTGCAGGAAATCATCTCGATTGACCTTTAACTTTTCCATGGC
CTCAGGATCAACGGTCACCTTGGCATCGGCCTTGATCAGTCGGTTCATGG
CACTCG
BS16394.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1618-PA | 2238 | comt-RA | 1349..2238 | 906..17 | 4406 | 99.7 | Minus |
CG33101-PA | 2259 | Nsf2-RA | 1807..1835 | 463..435 | 145 | 100 | Minus |
CG33101-PA | 2259 | Nsf2-RA | 1753..1796 | 517..474 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comt-RB | 3024 | CG1618-RB | 1574..2463 | 906..17 | 4424 | 99.8 | Minus |
comt-RA | 3087 | CG1618-RA | 1574..2463 | 906..17 | 4424 | 99.8 | Minus |
Nsf2-RC | 3521 | CG33101-RC | 1448..2318 | 901..31 | 969 | 74.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13260826..13261424 | 906..308 | 2984 | 99.8 | Minus |
3R | 32079331 | 3R | 13834700..13835465 | 31..796 | 924 | 74.7 | Plus |
X | 23542271 | X | 13261503..13261663 | 310..150 | 805 | 100 | Minus |
X | 23542271 | X | 13261733..13261864 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:16:10 has no hits.
BS16394.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:42 Download gff for
BS16394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1618-PA | 1349..2238 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:01 Download gff for
BS16394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comt-RA | 1574..2470 | 8..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:54 Download gff for
BS16394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comt-RA | 1574..2470 | 8..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:54 Download gff for
BS16394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13260826..13261423 | 309..906 | 99 | -> | Minus |
X | 13261505..13261663 | 150..308 | 100 | -> | Minus |
X | 13261732..13261871 | 8..149 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:01 Download gff for
BS16394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13154859..13155456 | 309..906 | 99 | -> | Minus |
arm_X | 13155538..13155696 | 150..308 | 100 | -> | Minus |
arm_X | 13155765..13155904 | 8..149 | 96 | | Minus |
BS16394.5prime Sequence
772 bp (762 high quality bases) assembled on 2007-05-15
> BS16394.5prime
GAAGTTATCAGTCGACATGGCTTATATTTTGAAGGCCACCAAATGTCCCA
CGGACGAGCTTTCGCTGACCAATCGGGCTATAGTGAATGTTGGTGATTTT
CCGGAGGAAATCAAATATGCGGACATATCGCCGGCTCCGGGTCAGCACTT
CATCTTTGCGCTGGAGAAAACGGTGGAGGTGCCCAGCGGCTATGTTGGCT
TCTCCCTGGTCCAACGAAAGTGGGCCATGGTGTCCATTAATCAGGAACTG
GAGGTTCGTCCCTATCGCTTTGATGCCAGCTCGGATGTCATCACTTGTGT
GTCCTTTGAGACGGACTTTCTGCAGAAGAAGACTGTCTCCCAGGAACCCT
ATGACTCCGATCAAATGGCCAAGGAGTTCATCATGCAATTCGCCGGAATG
GCACTCACCGTTGGCCAATCACTGGTCTTCAATTTCAAGGACAAGAAACT
TCTCGGCCTGGCCGTCAAATCCCTAGAGGCCATCGATCCCAAGAGCTTGG
GCGAGGGCAAGGACACCGCGATGCGTAATGTCCGCTTCGGCCGCATCCTT
GGCAACACCGTGGTGCAGTTCGAGAAGGCCGAGAACAGTTCGCTGAATCT
GCAGGGCAAGAGCAAGGGCAAGGTGGTCCGCCAGTCCATTATAAACCCGG
ATTGGGACTTTGGCAAAATGGGCATCGGTGGCCTGGACAAGGAATTCAAT
TCGATATTTCGACGAGCCTTCGCATCCCGTGTCTTCCCACCGGAACTGGT
CGAGCAGCTGGGCTGNCAGCAT
BS16394.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1618-PA | 2238 | comt-RA | 1..749 | 17..765 | 3745 | 100 | Plus |
CG33101-PA | 2259 | Nsf2-RA | 535..581 | 536..582 | 160 | 93.6 | Plus |
CG33101-PA | 2259 | Nsf2-RA | 631..722 | 632..723 | 160 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comt-RB | 3024 | CG1618-RB | 226..981 | 17..772 | 3754 | 99.7 | Plus |
comt-RA | 3087 | CG1618-RA | 226..981 | 17..772 | 3754 | 99.7 | Plus |
Nsf2-RC | 3521 | CG33101-RC | 115..841 | 40..763 | 1100 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13259795..13260233 | 334..772 | 2169 | 99.5 | Plus |
X | 23542271 | X | 13259503..13259721 | 115..333 | 1095 | 100 | Plus |
3R | 32079331 | 3R | 13836416..13836643 | 763..536 | 540 | 82.5 | Minus |
3R | 32079331 | 3R | 13837382..13837702 | 429..115 | 490 | 77.6 | Minus |
X | 23542271 | X | 13259336..13259429 | 26..119 | 455 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:10:45 has no hits.
BS16394.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:35 Download gff for
BS16394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1618-PA | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:14 Download gff for
BS16394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comt-RA | 223..981 | 14..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:33 Download gff for
BS16394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comt-RA | 223..981 | 14..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:33 Download gff for
BS16394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13259333..13259424 | 23..114 | 98 | -> | Plus |
X | 13259503..13259721 | 115..333 | 100 | -> | Plus |
X | 13259795..13260233 | 334..772 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:14 Download gff for
BS16394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13153536..13153754 | 115..333 | 100 | -> | Plus |
arm_X | 13153366..13153457 | 23..114 | 98 | -> | Plus |
arm_X | 13153828..13154266 | 334..772 | 99 | | Plus |
BS16394.pep Sequence
Translation from 16 to 2253
> BS16394.pep
MAYILKATKCPTDELSLTNRAIVNVGDFPEEIKYADISPAPGQHFIFALE
KTVEVPSGYVGFSLVQRKWAMVSINQELEVRPYRFDASSDVITCVSFETD
FLQKKTVSQEPYDSDQMAKEFIMQFAGMALTVGQSLVFNFKDKKLLGLAV
KSLEAIDPKSLGEGKDTAMRNVRFGRILGNTVVQFEKAENSSLNLQGKSK
GKVVRQSIINPDWDFGKMGIGGLDKEFNSIFRRAFASRVFPPELVEQLGC
KHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEA
NVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGVHDTV
VNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNE
QGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAAQS
SAMNRLIKADAKVTVDPEAMEKLKVNRDDFLHSLEHDIKPAFGTAQEILD
NMLARGVINWGAPVSNLLEDGMLYVQQAKAPESSGLVSVLVAGAPNSGKT
ALAAQLAKMSDFPFVKVCSPEDMVGYTESAKCLHIRKIFDDAYRSMLSCI
VVDNVERLLDYGSIGPRYSNMTLQALLVLLKKQPPKGRKLLILCTSSRRE
VLEEMEMLTAFTSVLHVPNLSKPDHVLAVLENTDIFSKGEIQAIGKKMAG
KRVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGGLDMVARQ*
BS16394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comt-PB | 745 | CG1618-PB | 1..745 | 1..745 | 3766 | 100 | Plus |
comt-PA | 745 | CG1618-PA | 1..745 | 1..745 | 3766 | 100 | Plus |
Nsf2-PC | 752 | CG33101-PC | 6..746 | 2..741 | 3208 | 84.5 | Plus |
Nsf2-PB | 752 | CG33101-PB | 6..746 | 2..741 | 3208 | 84.5 | Plus |
Nsf2-PA | 752 | CG33101-PA | 6..746 | 2..741 | 3208 | 84.5 | Plus |