Clone BS16394 Report

Search the DGRC for BS16394

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptcomt-RA
Protein status:BS16394.pep: full length peptide match
Sequenced Size:2270

Clone Sequence Records

BS16394.complete Sequence

2270 bp assembled on 2009-12-08

GenBank Submission: KX802435

> BS16394.complete
GAAGTTATCAGTCGACATGGCTTATATTTTGAAGGCCACCAAATGTCCCA
CGGACGAGCTTTCGCTGACCAATCGGGCTATAGTGAATGTTGGTGATTTT
CCGGAGGAAATCAAATATGCGGACATATCGCCGGCTCCGGGTCAGCACTT
CATCTTTGCGCTGGAGAAAACGGTGGAGGTGCCCAGCGGCTATGTTGGCT
TCTCCCTGGTCCAACGAAAGTGGGCCATGGTGTCCATTAATCAGGAACTG
GAGGTTCGTCCCTATCGCTTTGATGCCAGCTCGGATGTCATCACTTGTGT
GTCCTTTGAGACGGACTTTCTGCAGAAGAAGACTGTCTCCCAGGAACCCT
ATGACTCCGATCAAATGGCCAAGGAGTTCATCATGCAATTCGCCGGAATG
GCACTCACCGTTGGCCAATCACTGGTCTTCAATTTCAAGGACAAGAAACT
TCTCGGCCTGGCCGTCAAATCCCTAGAGGCCATCGATCCCAAGAGCTTGG
GCGAGGGCAAGGACACCGCGATGCGTAATGTCCGCTTCGGCCGCATCCTT
GGCAACACCGTGGTGCAGTTCGAGAAGGCCGAGAACAGTTCGCTGAATCT
GCAGGGCAAGAGCAAGGGCAAGGTGGTCCGCCAGTCCATTATAAACCCGG
ATTGGGACTTTGGCAAAATGGGCATCGGTGGCCTGGACAAGGAATTCAAT
TCGATATTTCGACGAGCCTTCGCATCCCGTGTCTTCCCACCGGAACTGGT
CGAGCAGCTGGGCTGCAAGCATGTCAAGGGCATTCTACTTTATGGTCCAC
CGGGTACGGGCAAAACTCTGATGGCTCGCCAAATCGGAACTATGTTAAAC
GCCCGGGAGCCGAAAATCGTCAACGGTCCACAGATCCTGGACAAGTACGT
GGGCGAATCGGAGGCCAATGTCCGGCGTCTGTTTGCCGAGGCGGAGGAGG
AGGAGAAACGCCTAGGTCCCAACAGTGGACTACATATCATCATCTTCGAC
GAGATCGATGCCATTTGCAAGCAGCGTGGCTCCGTGGCCGGAAATAGTGG
TGTCCACGACACCGTCGTCAATCAGTTGCTAACCAAAATCGATGGCGTTG
ATCAGCTGAACAACATTCTCGTTATCGGCATGACCAATCGCAGGGACATG
ATCGATGAGGCTTTGCTGCGACCGGGTCGCCTCGAGGTCCAAATGGAGAT
CAGCCTGCCCAACGAGCAGGGTCGCGTCCAGATTCTCAATATCCACACCA
AGCGGATGCGTGAATTCAACAAGATTAACGACGATGTGGACAACAAGGAG
ATCGCTGCGCTGACCAAGAATTTCAGCGGTGCCGAGCTGGAGGGTTTGGT
CCGTGCCGCCCAGTCGAGTGCCATGAACCGACTGATCAAGGCCGATGCCA
AGGTGACCGTTGATCCTGAGGCCATGGAAAAGTTAAAGGTCAATCGAGAT
GATTTCCTGCACTCGCTGGAGCATGACATTAAGCCGGCATTCGGTACGGC
CCAGGAGATTCTCGACAATATGCTGGCCCGCGGTGTTATCAACTGGGGAG
CACCGGTTAGCAATCTCCTCGAGGACGGCATGCTGTATGTGCAGCAGGCC
AAGGCTCCAGAATCTAGCGGCTTGGTCTCCGTACTCGTGGCCGGAGCACC
CAACTCTGGCAAGACGGCACTGGCCGCTCAGCTTGCCAAGATGTCAGACT
TTCCGTTCGTGAAGGTCTGCTCGCCAGAGGACATGGTCGGCTACACTGAA
TCGGCCAAGTGCCTGCACATTCGTAAGATCTTCGACGACGCGTATCGTTC
CATGCTTAGCTGCATTGTGGTGGACAATGTGGAGCGTCTGCTGGACTACG
GATCGATTGGGCCGCGATATTCCAATATGACGCTACAGGCACTGCTGGTG
CTGCTCAAGAAACAGCCGCCAAAGGGCCGCAAATTGCTCATATTGTGCAC
ATCTAGCAGGAGGGAGGTCCTGGAAGAGATGGAGATGCTGACGGCCTTCA
CCTCGGTGCTCCACGTGCCCAATCTTTCCAAGCCCGACCACGTTCTGGCC
GTGCTGGAGAACACGGATATCTTTAGCAAGGGCGAAATCCAGGCGATTGG
CAAGAAGATGGCCGGAAAACGTGTGTTTATTGGCATCAAGAAGCTGCTGG
GTCTCATTGACATGGCTAGGCAAACGGAGCAATCACAGCGGGCCATAAAG
TTCCTGTCCAAGATGGAAGAGGAGGGTGGTCTCGACATGGTGGCGCGGCA
GTAAAAGCTTTCTAGACCAT

BS16394.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
comt-RB 2238 CG1618-PB 1..2238 17..2254 11160 99.9 Plus
comt-RA 2238 CG1618-PA 1..2238 17..2254 11160 99.9 Plus
Nsf2-RC 2259 CG33101-PC 36..2239 40..2240 3375 77.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
comt-RB 3024 CG1618-RB 226..2463 17..2254 11160 99.9 Plus
comt-RA 3087 CG1618-RA 226..2463 17..2254 11160 99.9 Plus
Nsf2-RC 3521 CG33101-RC 115..2318 40..2240 3375 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13259795..13261424 334..1963 8135 99.9 Plus
3R 32079331 3R 13835775..13836643 1404..536 2020 82.2 Minus
X 23542271 X 13259503..13259721 115..333 1095 100 Plus
3R 32079331 3R 13834700..13835465 2240..1475 935 74.8 Minus
X 23542271 X 13261503..13261663 1961..2121 805 100 Plus
X 23542271 X 13261733..13261864 2123..2254 660 100 Plus
3R 32079331 3R 13837382..13837702 429..115 490 77.6 Minus
X 23542271 X 13259336..13259429 26..119 455 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 01:52:38 has no hits.

BS16394.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:36 Download gff for BS16394.complete
Subject Subject Range Query Range Percent Splice Strand
comt-RA 252..2487 17..2252 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:16 Download gff for BS16394.complete
Subject Subject Range Query Range Percent Splice Strand
comt-RA 226..2461 17..2252 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:54 Download gff for BS16394.complete
Subject Subject Range Query Range Percent Splice Strand
comt-RA 252..2487 17..2252 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:57 Download gff for BS16394.complete
Subject Subject Range Query Range Percent Splice Strand
comt-RA 226..2461 17..2252 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:57 Download gff for BS16394.complete
Subject Subject Range Query Range Percent Splice Strand
X 13259333..13259424 23..114 98 -> Plus
X 13259503..13259721 115..333 100 -> Plus
X 13259795..13261423 334..1962 99 -> Plus
X 13261505..13261663 1963..2121 100 -> Plus
X 13261732..13261862 2122..2252 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:16 Download gff for BS16394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13155765..13155895 2122..2252 99   Plus
arm_X 13155538..13155696 1963..2121 100 -> Plus
arm_X 13153366..13153457 23..114 98 -> Plus
arm_X 13153536..13153754 115..333 100 -> Plus
arm_X 13153828..13155456 334..1962 99 -> Plus

BS16394.3prime Sequence

906 bp (812 high quality bases) assembled on 2007-05-15

> BS16394.3prime
ATGGTCTAGAAAGCTTTTACTGCCGCGCCACCATGTCGAGACCACCCTCC
TCTTCCATCTTGGACAGGAACTTTATGGCCCGCTGTGATTGCTCCGTTTG
CCTAGCCATGTCAATGAGACCCAGCAGCTTCTTGATGCCAATAAACACAC
GTTTTCCGGCCATCTTCTTGCCAATCGCCTGGATTTCGCCCTTGCTAAAG
ATATCCGTGTTCTCCAGCACGGCCAGAACGTGGTCGGGCTTGGAAAGATT
GGGCACGTGGAGCACCGAGGTGAAGGCCGTCAGCATCTCCATCTCTTCCA
GGACCTCCCTCCTGCTAGATGTGCACAATATGAGCAATTTGCGGCCCTTT
GGCGGCTGTTTCTTGAGCAGCACCAGCAGTGCCTGTAGCGTCATATTGGA
ATATCGCGGCCCAATCGATCCGTAGTCCAGCAGACGCTCCACATTGTCCA
CCACAATGCAGCTAAGCATGGAACGATACGCGTCGTCGAAGATCTTACGA
ATGTGCAGGCACTTGGCCGATTCAGTGTAGCCGACCATGTCCTCTGGCGA
GCAGACCTTCACGAACGGAAAGTCTGACATCTTGGCAAGCTGAGCGGCCA
GTGCCGTCTTGCCAGAGTTGGGTGCTCCGGCCACGAGTACGGAGACCAAG
CCGCTAGATTCTGGAGCCTTGGCCTGCTGCACATACAGCATGCCGTCCTC
GAGGAGATTGCTAACCGGTGCTCCCCAGTTGATAACACCGCGGGCCAGCA
TATTGTCGAGAATCTCCTGNGCCGTACCGAATGCCGGCTTAATGTCATGC
TCCAGCGAGTGCAGGAAATCATCTCGATTGACCTTTAACTTTTCCATGGC
CTCAGGATCAACGGTCACCTTGGCATCGGCCTTGATCAGTCGGTTCATGG
CACTCG

BS16394.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1618-PA 2238 comt-RA 1349..2238 906..17 4406 99.7 Minus
CG33101-PA 2259 Nsf2-RA 1807..1835 463..435 145 100 Minus
CG33101-PA 2259 Nsf2-RA 1753..1796 517..474 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
comt-RB 3024 CG1618-RB 1574..2463 906..17 4424 99.8 Minus
comt-RA 3087 CG1618-RA 1574..2463 906..17 4424 99.8 Minus
Nsf2-RC 3521 CG33101-RC 1448..2318 901..31 969 74.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13260826..13261424 906..308 2984 99.8 Minus
3R 32079331 3R 13834700..13835465 31..796 924 74.7 Plus
X 23542271 X 13261503..13261663 310..150 805 100 Minus
X 23542271 X 13261733..13261864 148..17 660 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:16:10 has no hits.

BS16394.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:42 Download gff for BS16394.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1618-PA 1349..2238 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:01 Download gff for BS16394.3prime
Subject Subject Range Query Range Percent Splice Strand
comt-RA 1574..2470 8..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:54 Download gff for BS16394.3prime
Subject Subject Range Query Range Percent Splice Strand
comt-RA 1574..2470 8..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:54 Download gff for BS16394.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13260826..13261423 309..906 99 -> Minus
X 13261505..13261663 150..308 100 -> Minus
X 13261732..13261871 8..149 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:01 Download gff for BS16394.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13154859..13155456 309..906 99 -> Minus
arm_X 13155538..13155696 150..308 100 -> Minus
arm_X 13155765..13155904 8..149 96   Minus

BS16394.5prime Sequence

772 bp (762 high quality bases) assembled on 2007-05-15

> BS16394.5prime
GAAGTTATCAGTCGACATGGCTTATATTTTGAAGGCCACCAAATGTCCCA
CGGACGAGCTTTCGCTGACCAATCGGGCTATAGTGAATGTTGGTGATTTT
CCGGAGGAAATCAAATATGCGGACATATCGCCGGCTCCGGGTCAGCACTT
CATCTTTGCGCTGGAGAAAACGGTGGAGGTGCCCAGCGGCTATGTTGGCT
TCTCCCTGGTCCAACGAAAGTGGGCCATGGTGTCCATTAATCAGGAACTG
GAGGTTCGTCCCTATCGCTTTGATGCCAGCTCGGATGTCATCACTTGTGT
GTCCTTTGAGACGGACTTTCTGCAGAAGAAGACTGTCTCCCAGGAACCCT
ATGACTCCGATCAAATGGCCAAGGAGTTCATCATGCAATTCGCCGGAATG
GCACTCACCGTTGGCCAATCACTGGTCTTCAATTTCAAGGACAAGAAACT
TCTCGGCCTGGCCGTCAAATCCCTAGAGGCCATCGATCCCAAGAGCTTGG
GCGAGGGCAAGGACACCGCGATGCGTAATGTCCGCTTCGGCCGCATCCTT
GGCAACACCGTGGTGCAGTTCGAGAAGGCCGAGAACAGTTCGCTGAATCT
GCAGGGCAAGAGCAAGGGCAAGGTGGTCCGCCAGTCCATTATAAACCCGG
ATTGGGACTTTGGCAAAATGGGCATCGGTGGCCTGGACAAGGAATTCAAT
TCGATATTTCGACGAGCCTTCGCATCCCGTGTCTTCCCACCGGAACTGGT
CGAGCAGCTGGGCTGNCAGCAT

BS16394.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1618-PA 2238 comt-RA 1..749 17..765 3745 100 Plus
CG33101-PA 2259 Nsf2-RA 535..581 536..582 160 93.6 Plus
CG33101-PA 2259 Nsf2-RA 631..722 632..723 160 86.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
comt-RB 3024 CG1618-RB 226..981 17..772 3754 99.7 Plus
comt-RA 3087 CG1618-RA 226..981 17..772 3754 99.7 Plus
Nsf2-RC 3521 CG33101-RC 115..841 40..763 1100 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13259795..13260233 334..772 2169 99.5 Plus
X 23542271 X 13259503..13259721 115..333 1095 100 Plus
3R 32079331 3R 13836416..13836643 763..536 540 82.5 Minus
3R 32079331 3R 13837382..13837702 429..115 490 77.6 Minus
X 23542271 X 13259336..13259429 26..119 455 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 16:10:45 has no hits.

BS16394.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:35 Download gff for BS16394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1618-PA 1..756 17..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:14 Download gff for BS16394.5prime
Subject Subject Range Query Range Percent Splice Strand
comt-RA 223..981 14..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:33 Download gff for BS16394.5prime
Subject Subject Range Query Range Percent Splice Strand
comt-RA 223..981 14..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:33 Download gff for BS16394.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13259333..13259424 23..114 98 -> Plus
X 13259503..13259721 115..333 100 -> Plus
X 13259795..13260233 334..772 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:14 Download gff for BS16394.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13153536..13153754 115..333 100 -> Plus
arm_X 13153366..13153457 23..114 98 -> Plus
arm_X 13153828..13154266 334..772 99   Plus

BS16394.pep Sequence

Translation from 16 to 2253

> BS16394.pep
MAYILKATKCPTDELSLTNRAIVNVGDFPEEIKYADISPAPGQHFIFALE
KTVEVPSGYVGFSLVQRKWAMVSINQELEVRPYRFDASSDVITCVSFETD
FLQKKTVSQEPYDSDQMAKEFIMQFAGMALTVGQSLVFNFKDKKLLGLAV
KSLEAIDPKSLGEGKDTAMRNVRFGRILGNTVVQFEKAENSSLNLQGKSK
GKVVRQSIINPDWDFGKMGIGGLDKEFNSIFRRAFASRVFPPELVEQLGC
KHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEA
NVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGVHDTV
VNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNE
QGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAAQS
SAMNRLIKADAKVTVDPEAMEKLKVNRDDFLHSLEHDIKPAFGTAQEILD
NMLARGVINWGAPVSNLLEDGMLYVQQAKAPESSGLVSVLVAGAPNSGKT
ALAAQLAKMSDFPFVKVCSPEDMVGYTESAKCLHIRKIFDDAYRSMLSCI
VVDNVERLLDYGSIGPRYSNMTLQALLVLLKKQPPKGRKLLILCTSSRRE
VLEEMEMLTAFTSVLHVPNLSKPDHVLAVLENTDIFSKGEIQAIGKKMAG
KRVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGGLDMVARQ*

BS16394.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
comt-PB 745 CG1618-PB 1..745 1..745 3766 100 Plus
comt-PA 745 CG1618-PA 1..745 1..745 3766 100 Plus
Nsf2-PC 752 CG33101-PC 6..746 2..741 3208 84.5 Plus
Nsf2-PB 752 CG33101-PB 6..746 2..741 3208 84.5 Plus
Nsf2-PA 752 CG33101-PA 6..746 2..741 3208 84.5 Plus