Clone Sequence Records
BS16396.5prime Sequence
499 bp (352 high quality bases) assembled on 2007-05-15
> BS16396.5prime
GAAGTTATCAGTCGACATGGAAACGGCCAGAATGGAGACGGCGATGGAGA
CACATTTTATGGCCAAAATGGGGAAGTGGATGACCCCTGAGGAGGAGGCG
CGTCAAAAGTTCATCATGAGGGAGCGGGACCGCGAGCGGAAACGGATCAA
GCGCATGAATCCCGAGTACAGGCAGATGGAACGAGAGCGGGATCGGTTCC
GCAAGCTGACACCCAGGCCCAGTCTGATGACCCCCGAGGAGGAGGCCCGC
CACAAGTTCATCATGCGGGAGCGGGATCGCGAGAGGAAGCGGAATCAGCG
CCTCAATCCCGAGTACCGGCGAATGGAACGCGAGCGCGATCGATTCCGCA
AGAAGTTGACCCCCGATGAGGAGCTGCGACTGGAAATGATCCAAAGGGAG
CGGGATCGAGAAAGGAAACGAATCAAGCGAATGAATCCGGAATACAGAAA
GCTGGAGCAAGAACGTGACAAGGATAAGAAAAAAGGTCGTAAGGCCCAC
BS16396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-PA | 1470 | CG5674-RA | 1..277 | 17..293 | 1385 | 100 | Plus |
| CG5674-PB | 459 | CG5674-RB | 1..277 | 17..293 | 1385 | 100 | Plus |
| CG5674-PC | 1428 | CG5674-RC | 17..235 | 75..293 | 1095 | 100 | Plus |
| CG5674-PA | 1470 | CG5674-RA | 281..467 | 297..483 | 785 | 96.7 | Plus |
| CG5674-PC | 1428 | CG5674-RC | 239..425 | 297..483 | 785 | 96.7 | Plus |
| CG5674-PB | 459 | CG5674-RB | 281..339 | 297..355 | 295 | 100 | Plus |
| CG5674-PA | 1470 | CG5674-RA | 210..336 | 79..205 | 235 | 87.4 | Plus |
| CG5674-PC | 1428 | CG5674-RC | 168..294 | 79..205 | 235 | 87.4 | Plus |
| CG5674-PB | 459 | CG5674-RB | 210..336 | 79..205 | 235 | 87.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-RA | 3112 | CG5674-RA | 168..647 | 17..496 | 2220 | 97.7 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 168..506 | 17..355 | 1650 | 99.4 | Plus |
| CG5674-RE | 2980 | CG5674-RE | 168..464 | 17..316 | 1075 | 91.4 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 764..906 | 354..496 | 580 | 93.7 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 377..503 | 79..205 | 395 | 87.4 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 377..503 | 79..205 | 395 | 87.4 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 230..356 | 226..352 | 350 | 85.9 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 230..356 | 226..352 | 350 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17969370..17969518 | 75..223 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 17971872..17972003 | 224..355 | 615 | 97.7 | Plus |
| 2L | 23513712 | 2L | 17972261..17972403 | 354..496 | 580 | 93.7 | Plus |
| 2L | 23513712 | 2L | 17971874..17972000 | 79..205 | 395 | 87.4 | Plus |
| 2L | 23513712 | 2L | 17969374..17969500 | 226..352 | 350 | 85 | Plus |
| 2L | 23513712 | 2L | 17963546..17963605 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:58:13 has no hits.
BS16396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:49 Download gff for
BS16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-PA | 1..483 | 17..499 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:13 Download gff for
BS16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RA | 164..650 | 10..499 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:57 Download gff for
BS16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RA | 164..650 | 10..499 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:57 Download gff for
BS16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17963542..17963605 | 10..76 | 94 | -> | Plus |
| 2L | 17969372..17969518 | 77..223 | 100 | -> | Plus |
| 2L | 17971872..17972003 | 224..355 | 98 | -> | Plus |
| 2L | 17972263..17972406 | 356..499 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:13 Download gff for
BS16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17963542..17963605 | 10..76 | 94 | -> | Plus |
| arm_2L | 17969372..17969518 | 77..223 | 100 | -> | Plus |
| arm_2L | 17971872..17972003 | 224..355 | 98 | -> | Plus |
| arm_2L | 17972263..17972406 | 356..499 | 93 | | Plus |
BS16396.complete Sequence
1502 bp assembled on 2010-06-25
GenBank Submission: KX804322
> BS16396.complete
GAAGTTATCAGTCGACATGGAAACGGCCAGAATGGAGACGGCGATGGAGA
CACATTTTATGGCCAAAATGGGGAAGTGGATGACCCCTGAGGAGGAGGCG
CGTCAAAAGTTCATCATGAGGGAGCGGGACCGCGAGCGGAAACGGATCAA
GCGCATGAATCCCGAGTACAGGCAGATGGAACGAGAGCGGGATCGGTTCC
GCAAGCTGACACCCAGGCCCAGTCTGATGACCCCCGAGGAGGAGGCCCGC
CACAAGTTCATCATGCGGGAGCGGGATCGCGAGAGGAAGCGGATCAAGCG
CCTCAATCCCGAGTACCGGCGAATGGAACGCGAGCGCGATCGATTCCGCA
AGAAGTTGACCCCCGATGAGGAGCTGCGACTGAAAATGATCCAAAGGGAG
CGGGATCGAGAAAGGAAACGAATCAAGCGAATGAATCCGGAGTACAGAAG
GCTGGAGCAGGAACGTGACAGGGATAGGAAAAAGGCTCGTAGGGCCAACG
AGGCCTTCAGGCAGCTGGAAAAGCTAAGGGATAAGATCCGAAAGGATCGA
AAGAAGGGCTTGCTTGTCACGGATCCGACGCAGCTGCCGCCGGAATTCGC
AGCCATGATACCGCCAGTGCCTGTGGTTAAGCCCGAAGTAGGTGTGTCAC
CAGCCCCGCCCCCAGGCCAGCAGCAACCCACGCCACAGCTGCAGCAACAG
CAGCAGCAACAGTTGCAGCAACACCAGCAGGTGCCACAGCAACAGCAGCA
GCATCAGCAGCCTCCGCCCACGCATCTGCAGGAGCAGCAGTTGAGTCACC
AGCTCGCGCATCAGCGGAACCGAATGATGTCTAGCCAACTCACCCAACTG
GCCACGCCCCCCGCCCATGCCTCGCACCTACAGCAGCTGAATAAGTTGCA
GCAACTCTACCCGCCACGCAGCTTTGGCCACCCCGCTTTACCTATCGCTG
GTGTGACGCTGATGCCGCAGCTTTGTCATCCCATCCTGCATCAGAACCTC
AGCGCTACTCTGTATGCAGGTCCACCGAATGGCATCAAGCAGGAGTATGG
ACAGGATATCTCCGCCTCGGCTATGGCTGCTGCGCAGGCGGCGGCACTGG
CCTCGCTGAGGAATCCGCAACAGCAGCAGCAACAGGATGATTCAGAAATG
GTCATTAGTCTCGAACCGGAGATAGTTCTCCAGACAGGTCCCGATGTAAA
TCCCGCCCAGCCACCTCCGCAGCAACAGCATCTTTTCAGCGCCCATCAGC
ACCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACATCATCTGCAGCAG
CAACAGCACTGCAACATGTTCCAGCATATGGCCCCTCAGGCGCACATGCA
ACACATGCGCTCACTGCCGCCTCCGCCGCCGCCCCCCTCGCTGACCTTGC
CACCCCTGCCGCCCCCGCCACCTACAACTCACCAGCAACAACAGCAACCT
GCGCCGCCACAGCAACTGCAACATGCTCCGCAGTGAAAGCTTTCTAGACC
AT
BS16396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-RA | 1470 | CG5674-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
| CG5674-RE | 1338 | CG5674-PE | 63..1338 | 226..1486 | 5850 | 97.4 | Plus |
| CG5674-RD | 1191 | CG5674-PD | 57..1191 | 352..1486 | 5675 | 100 | Plus |
| CG5674-RE | 1338 | CG5674-PE | 1..297 | 17..316 | 1075 | 91.3 | Plus |
| CG5674-RA | 1470 | CG5674-PA | 63..189 | 226..352 | 395 | 87.4 | Plus |
| CG5674-RA | 1470 | CG5674-PA | 210..336 | 79..205 | 395 | 87.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-RA | 3112 | CG5674-RA | 168..1637 | 17..1486 | 7350 | 100 | Plus |
| CG5674-RE | 2980 | CG5674-RE | 230..1505 | 226..1486 | 5850 | 97.4 | Plus |
| CG5674-RD | 2833 | CG5674-RD | 224..1358 | 352..1486 | 5675 | 100 | Plus |
| CG5674-RE | 2980 | CG5674-RE | 168..464 | 17..316 | 1075 | 91.3 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 230..356 | 226..352 | 395 | 87.4 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 377..503 | 79..205 | 395 | 87.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17972261..17973393 | 354..1486 | 5665 | 100 | Plus |
| 2L | 23513712 | 2L | 17969370..17969518 | 75..223 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 17971872..17972003 | 224..355 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 17969374..17969500 | 226..352 | 395 | 87.4 | Plus |
| 2L | 23513712 | 2L | 17971874..17972000 | 79..205 | 395 | 87.4 | Plus |
| 2L | 23513712 | 2L | 17963546..17963605 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6949 | 1244..1474 | 268 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6949 | 1118..1317 | 228 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2535 | 1113..1307 | 203 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2491 | 1208..1308 | 199 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2510 | 1276..1483 | 168 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6838 | 1430..1483 | 135 | 72.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 960..1035 | 1399..1474 | 118 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6824 | 1430..1490 | 116 | 65.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1174 | 1430..1490 | 113 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2673 | 1419..1490 | 112 | 63.9 | Plus |
BS16396.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:48 Download gff for
BS16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RA | 209..1677 | 17..1485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:46 Download gff for
BS16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RA | 168..1636 | 17..1485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:12 Download gff for
BS16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RA | 168..1636 | 17..1485 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:12 Download gff for
BS16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17963546..17963605 | 17..76 | 100 | -> | Plus |
| 2L | 17969372..17969518 | 77..223 | 100 | -> | Plus |
| 2L | 17971872..17972003 | 224..355 | 100 | -> | Plus |
| 2L | 17972263..17973392 | 356..1485 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:46 Download gff for
BS16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17963546..17963605 | 17..76 | 100 | -> | Plus |
| arm_2L | 17969372..17969518 | 77..223 | 100 | -> | Plus |
| arm_2L | 17971872..17972003 | 224..355 | 100 | -> | Plus |
| arm_2L | 17972263..17973392 | 356..1485 | 100 | | Plus |
BS16396.pep Sequence
Translation from 16 to 1485
> BS16396.pep
METARMETAMETHFMAKMGKWMTPEEEARQKFIMRERDRERKRIKRMNPE
YRQMERERDRFRKLTPRPSLMTPEEEARHKFIMRERDRERKRIKRLNPEY
RRMERERDRFRKKLTPDEELRLKMIQRERDRERKRIKRMNPEYRRLEQER
DRDRKKARRANEAFRQLEKLRDKIRKDRKKGLLVTDPTQLPPEFAAMIPP
VPVVKPEVGVSPAPPPGQQQPTPQLQQQQQQQLQQHQQVPQQQQQHQQPP
PTHLQEQQLSHQLAHQRNRMMSSQLTQLATPPAHASHLQQLNKLQQLYPP
RSFGHPALPIAGVTLMPQLCHPILHQNLSATLYAGPPNGIKQEYGQDISA
SAMAAAQAAALASLRNPQQQQQQDDSEMVISLEPEIVLQTGPDVNPAQPP
PQQQHLFSAHQHQQQQQQQQQQQHHLQQQQHCNMFQHMAPQAHMQHMRSL
PPPPPPPSLTLPPLPPPPPTTHQQQQQPAPPQQLQHAPQ*
BS16396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-PA | 489 | CG5674-PA | 1..489 | 1..489 | 2593 | 100 | Plus |
| CG5674-PE | 445 | CG5674-PE | 1..445 | 1..489 | 2244 | 88.3 | Plus |
| CG5674-PD | 396 | CG5674-PD | 20..396 | 113..489 | 2006 | 100 | Plus |
| CG5674-PB | 152 | CG5674-PB | 1..113 | 1..113 | 592 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 483..963 | 29..489 | 261 | 23.3 | Plus |
| CG5674-PB | 152 | CG5674-PB | 20..116 | 112..180 | 188 | 42.3 | Plus |
