Clone Sequence Records
BS16403.3prime Sequence
903 bp (764 high quality bases) assembled on 2007-05-15
> BS16403.3prime
ATGGTCTAGAAGCTTTTATTTTTGTGGATAGTCGGTTCCAAATAGTTTGT
TACAAACTAAAGCGGATAGTTTGTAACGGGCTGCCTTCTTGGATGGCCCT
TCAGCATTAAACTCGCAGTTGTCCACACAGACGCTCATGGAGAAAGTATT
ATTCTGGTTTGTACCAGTGCCACCTGAAACTATAAAGGTGCACTGGGGGC
GCATATAGTTAAGAACCATGCAAGGGTGCATATTCTTCCATGTTTCGGGC
AACGGCTTCTTTGGCTCGACAACAGACGTCTGCTTGTTCTTCAAGTCATT
ATACAGGGTTGCGACATCAATATCATCGGTCTTCCATTCCTCACCAAGTT
TGTGAATGGCATAAGAGGCCATCTTTTCGAGTATATCATCCTCATCGCTT
TCCAAGCTCTTTCCTGGCCCGTCCAACACAGCTTTCATTTTGGTGGTTAG
GATTTCCTGCAGTGCCTTCTCGCAAGCTGCATTCCTTGCAGAGTTTACTG
AAGAACCCTCGGCTTCGTATTTCTTTGAGTTAACAACAACGCGAGCCATA
ATCTTTCCCTCGTGGTCTCGTTTTATTTGCATATTGTCGACTGTCACGCC
CTTTAACTCATTCAAAACCATAAGGGCATCCTTGGAGGTCACGGGCATGG
TCAACGGGCGAATTTTTGCCTTTTTATTTTTCTTTTGCTTCTTACGGCCA
TTGGTTGCGTCATCAGTGATAACGTCAGAAGATTTATCATCGGCGATTTT
GTTTTTGGTAACACGCATAGAAGATGTGATTTGATCACTGAGAGCCTTTG
GCTCAGAAGAAACAGTTCCCTTCTCATCGCTTTTATTTTCCCCGCCCATA
GCAGTTTTCTTTCAATTATCTGCGAGCGGAATTACAGCAACTGCATCCTC
TTC
BS16403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10630-PA | 975 | CG10630-RA | 88..975 | 903..16 | 4390 | 99.7 | Minus |
CG12493-PA | 891 | CG12493-RA | 377..493 | 539..423 | 385 | 93.1 | Minus |
CG12493-PA | 891 | CG12493-RA | 254..359 | 662..557 | 330 | 92.4 | Minus |
CG12493-PA | 891 | CG12493-RA | 847..885 | 60..22 | 170 | 97.4 | Minus |
CG12493-PA | 891 | CG12493-RA | 518..584 | 398..332 | 160 | 89.5 | Minus |
CG12493-PA | 891 | CG12493-RA | 669..698 | 241..212 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-RA | 1268 | CG10630-RA | 198..1086 | 903..15 | 4415 | 99.8 | Minus |
CG12493-RB | 1164 | CG12493-RB | 370..1001 | 662..22 | 1660 | 84.6 | Minus |
CG12493-RA | 1173 | CG12493-RA | 379..1010 | 662..22 | 1660 | 84.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5497705..5498561 | 15..871 | 4255 | 99.8 | Plus |
3L | 28110227 | 3L | 4752556..4753187 | 22..662 | 1555 | 83.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:55:26 has no hits.
BS16403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:57 Download gff for
BS16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-PA | 88..975 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:03 Download gff for
BS16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 198..1086 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:38 Download gff for
BS16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 198..1086 | 15..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:38 Download gff for
BS16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5498728..5498761 | 870..903 | 100 | | Plus |
3L | 5497705..5498559 | 15..869 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:03 Download gff for
BS16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5490805..5491659 | 15..869 | 99 | <- | Plus |
arm_3L | 5491828..5491861 | 870..903 | 100 | | Plus |
BS16403.5prime Sequence
851 bp (759 high quality bases) assembled on 2007-05-15
> BS16403.5prime
GAAGTTATCAGTCGACATGGAAGCAAAGCAATTGTTGGCTGAAAGTTGTG
CAAAGGTGGACATCTTAGAGATGAAGAAGGCATTGATCCCAAATCCTTCT
GCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCGCAGATAATTTGAAGAA
AACTGCTATGGGCGGGGAAAATAAAAGCGATGAGAAGGGAACTGTTTCTT
CTGAGCCAAAGGCTCTCAGTGATCAAATCACATCTTCTATGCGTGTTACC
AAAAACAAAATCGCCGATGATAAATCTTCTGACGTTATCACTGATGACGC
AACCAATGGCCGTAAGAAGCAAAAGAAAAATAAAAAGGCAAAAATTCGCC
CGTTGACCATGCCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAATGAG
TTAAAGGGCGTGACAGTCGACAATATGCAAATAAAACGAGACCACGAGGG
AAAGATTATGGCTCGCGTTGTTGTTAACTCAAAGAAATACGAAGCCGAGG
GTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTGCGAGAAGGCACTGCAG
GAAATCCTAACCACCAAAATGAAAGCTGTGTTGGACGGGCCAGGAAAGAG
CTTGGAAAGCGATGAGGATGATATACTCGAAAAGATGGCCTCTTATGCCA
TTCACAAACTTGGTGAGGAATGGAAGACCGATGATATTGATGTCGCAACC
CTGTATAATGACTTGAAGAACAAGCAGACGTCTGTTGTCGAGCCAAAGAA
GCCGTTGCCCGAAACATGGAAGAATATGCACCCTTGCATGGTTCTTAACT
ATATGCGCCCCCAGTGCACCTTTATAGTTTCAGGTGGCACTGGTACAAAC
C
BS16403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10630-PA | 975 | CG10630-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
CG12493-PA | 891 | CG12493-RA | 377..493 | 468..584 | 385 | 93.1 | Plus |
CG12493-PA | 891 | CG12493-RA | 254..359 | 345..450 | 330 | 92.4 | Plus |
CG12493-PA | 891 | CG12493-RA | 518..584 | 609..675 | 160 | 89.5 | Plus |
CG12493-PA | 891 | CG12493-RA | 669..698 | 766..795 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-RA | 1268 | CG10630-RA | 111..945 | 17..851 | 4175 | 100 | Plus |
CG12493-RB | 1164 | CG12493-RB | 370..870 | 345..851 | 1385 | 85.4 | Plus |
CG12493-RA | 1173 | CG12493-RA | 379..879 | 345..851 | 1385 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5497846..5498561 | 851..136 | 3580 | 100 | Minus |
3L | 28110227 | 3L | 4752687..4753187 | 851..345 | 1310 | 84.8 | Minus |
3L | 28110227 | 3L | 5498728..5498848 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:24:23 has no hits.
BS16403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:32 Download gff for
BS16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:56 Download gff for
BS16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 111..945 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:34 Download gff for
BS16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 111..945 | 17..851 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:34 Download gff for
BS16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5497846..5498559 | 138..851 | 100 | <- | Minus |
3L | 5498728..5498848 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:56 Download gff for
BS16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5490946..5491659 | 138..851 | 100 | <- | Minus |
arm_3L | 5491828..5491948 | 17..137 | 100 | | Minus |
BS16403.complete Sequence
1006 bp assembled on 2008-08-15
GenBank Submission: KX802218
> BS16403.complete
GAAGTTATCAGTCGACATGGAAGCAAAGCAATTGTTGGCTGAAAGTTGTG
CAAAGGTGGACATCTTAGAGATGAAGAAGGCATTGATCCCAAATCCTTCT
GCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCGCAGATAATTTGAAGAA
AACTGCTATGGGCGGGGAAAATAAAAGCGATGAGAAGGGAACTGTTTCTT
CTGAGCCAAAGGCTCTCAGTGATCAAATCACATCTTCTATGCGTGTTACC
AAAAACAAAATCGCCGATGATAAATCTTCTGACGTTATCACTGATGACGC
AACCAATGGCCGTAAGAAGCAAAAGAAAAATAAAAAGGCAAAAATTCGCC
CGTTGACCATGCCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAATGAG
TTAAAGGGCGTGACAGTCGACAATATGCAAATAAAACGAGACCACGAGGG
AAAGATTATGGCTCGCGTTGTTGTTAACTCAAAGAAATACGAAGCCGAGG
GTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTGCGAGAAGGCACTGCAG
GAAATCCTAACCACCAAAATGAAAGCTGTGTTGGACGGGCCAGGAAAGAG
CTTGGAAAGCGATGAGGATGATATACTCGAAAAGATGGCCTCTTATGCCA
TTCACAAACTTGGTGAGGAATGGAAGACCGATGATATTGATGTCGCAACC
CTGTATAATGACTTGAAGAACAAGCAGACGTCTGTTGTCGAGCCAAAGAA
GCCGTTGCCCGAAACATGGAAGAATATGCACCCTTGCATGGTTCTTAACT
ATATGCGCCCCCAGTGCACCTTTATAGTTTCAGGTGGCACTGGTACAAAC
CAGAATAATACTTTCTCCATGAGCGTCTGTGTGGACAACTGCGAGTTTAA
TGCTGAAGGGCCATCCAAGAAGGCAGCCCGTTACAAACTATCCGCTTTAG
TTTGTAACAAACTATTTGGAACCGACTATCCACAAAAATAAAAGCTTCTA
GACCAT
BS16403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-RA | 975 | CG10630-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
CG12493-RB | 882 | CG12493-PB | 245..876 | 345..985 | 1555 | 83.9 | Plus |
CG12493-RA | 891 | CG12493-PA | 254..885 | 345..985 | 1555 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-RA | 1268 | CG10630-RA | 111..1086 | 17..992 | 4880 | 100 | Plus |
CG12493-RB | 1164 | CG12493-RB | 370..1001 | 345..985 | 1555 | 83.9 | Plus |
CG12493-RA | 1173 | CG12493-RA | 379..1010 | 345..985 | 1555 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5497705..5498561 | 992..136 | 4285 | 100 | Minus |
3L | 28110227 | 3L | 4752556..4753187 | 985..345 | 1555 | 83.9 | Minus |
3L | 28110227 | 3L | 5498728..5498848 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:35:55 has no hits.
BS16403.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:24 Download gff for
BS16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-RA | 83..1058 | 17..992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:25 Download gff for
BS16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 111..1075 | 17..981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:39 Download gff for
BS16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-RA | 83..1047 | 17..981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:14 Download gff for
BS16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 111..1075 | 17..981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:14 Download gff for
BS16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5497716..5498559 | 138..981 | 100 | <- | Minus |
3L | 5498728..5498848 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:25 Download gff for
BS16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5490816..5491659 | 138..981 | 100 | <- | Minus |
arm_3L | 5491828..5491948 | 17..137 | 100 | | Minus |
BS16403.pep Sequence
Translation from 16 to 990
> BS16403.pep
MEAKQLLAESCAKVDILEMKKALIPNPSAEEDAVAVIPLADNLKKTAMGG
ENKSDEKGTVSSEPKALSDQITSSMRVTKNKIADDKSSDVITDDATNGRK
KQKKNKKAKIRPLTMPVTSKDALMVLNELKGVTVDNMQIKRDHEGKIMAR
VVVNSKKYEAEGSSVNSARNAACEKALQEILTTKMKAVLDGPGKSLESDE
DDILEKMASYAIHKLGEEWKTDDIDVATLYNDLKNKQTSVVEPKKPLPET
WKNMHPCMVLNYMRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPS
KKAARYKLSALVCNKLFGTDYPQK*
BS16403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-PA | 324 | CG10630-PA | 1..324 | 1..324 | 1659 | 100 | Plus |
CG12493-PA | 296 | CG12493-PA | 5..295 | 18..323 | 795 | 56.4 | Plus |
CG12493-PB | 293 | CG12493-PB | 5..292 | 18..323 | 791 | 56.4 | Plus |
DIP1-PH | 309 | CG17686-PH | 7..303 | 55..321 | 353 | 31 | Plus |
DIP1-PI | 378 | CG17686-PI | 76..372 | 55..321 | 353 | 31 | Plus |