Clone BS16403 Report

Search the DGRC for BS16403

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptblanks-RA
Protein status:BS16403.pep: full length peptide match
Sequenced Size:1006

Clone Sequence Records

BS16403.3prime Sequence

903 bp (764 high quality bases) assembled on 2007-05-15

> BS16403.3prime
ATGGTCTAGAAGCTTTTATTTTTGTGGATAGTCGGTTCCAAATAGTTTGT
TACAAACTAAAGCGGATAGTTTGTAACGGGCTGCCTTCTTGGATGGCCCT
TCAGCATTAAACTCGCAGTTGTCCACACAGACGCTCATGGAGAAAGTATT
ATTCTGGTTTGTACCAGTGCCACCTGAAACTATAAAGGTGCACTGGGGGC
GCATATAGTTAAGAACCATGCAAGGGTGCATATTCTTCCATGTTTCGGGC
AACGGCTTCTTTGGCTCGACAACAGACGTCTGCTTGTTCTTCAAGTCATT
ATACAGGGTTGCGACATCAATATCATCGGTCTTCCATTCCTCACCAAGTT
TGTGAATGGCATAAGAGGCCATCTTTTCGAGTATATCATCCTCATCGCTT
TCCAAGCTCTTTCCTGGCCCGTCCAACACAGCTTTCATTTTGGTGGTTAG
GATTTCCTGCAGTGCCTTCTCGCAAGCTGCATTCCTTGCAGAGTTTACTG
AAGAACCCTCGGCTTCGTATTTCTTTGAGTTAACAACAACGCGAGCCATA
ATCTTTCCCTCGTGGTCTCGTTTTATTTGCATATTGTCGACTGTCACGCC
CTTTAACTCATTCAAAACCATAAGGGCATCCTTGGAGGTCACGGGCATGG
TCAACGGGCGAATTTTTGCCTTTTTATTTTTCTTTTGCTTCTTACGGCCA
TTGGTTGCGTCATCAGTGATAACGTCAGAAGATTTATCATCGGCGATTTT
GTTTTTGGTAACACGCATAGAAGATGTGATTTGATCACTGAGAGCCTTTG
GCTCAGAAGAAACAGTTCCCTTCTCATCGCTTTTATTTTCCCCGCCCATA
GCAGTTTTCTTTCAATTATCTGCGAGCGGAATTACAGCAACTGCATCCTC
TTC

BS16403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10630-PA 975 CG10630-RA 88..975 903..16 4390 99.7 Minus
CG12493-PA 891 CG12493-RA 377..493 539..423 385 93.1 Minus
CG12493-PA 891 CG12493-RA 254..359 662..557 330 92.4 Minus
CG12493-PA 891 CG12493-RA 847..885 60..22 170 97.4 Minus
CG12493-PA 891 CG12493-RA 518..584 398..332 160 89.5 Minus
CG12493-PA 891 CG12493-RA 669..698 241..212 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-RA 1268 CG10630-RA 198..1086 903..15 4415 99.8 Minus
CG12493-RB 1164 CG12493-RB 370..1001 662..22 1660 84.6 Minus
CG12493-RA 1173 CG12493-RA 379..1010 662..22 1660 84.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5497705..5498561 15..871 4255 99.8 Plus
3L 28110227 3L 4752556..4753187 22..662 1555 83.9 Plus
Blast to na_te.dros performed on 2015-02-13 06:55:26 has no hits.

BS16403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:57 Download gff for BS16403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10630-PA 88..975 16..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:03 Download gff for BS16403.3prime
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 198..1086 15..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:38 Download gff for BS16403.3prime
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 198..1086 15..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:38 Download gff for BS16403.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5498728..5498761 870..903 100   Plus
3L 5497705..5498559 15..869 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:03 Download gff for BS16403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5490805..5491659 15..869 99 <- Plus
arm_3L 5491828..5491861 870..903 100   Plus

BS16403.5prime Sequence

851 bp (759 high quality bases) assembled on 2007-05-15

> BS16403.5prime
GAAGTTATCAGTCGACATGGAAGCAAAGCAATTGTTGGCTGAAAGTTGTG
CAAAGGTGGACATCTTAGAGATGAAGAAGGCATTGATCCCAAATCCTTCT
GCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCGCAGATAATTTGAAGAA
AACTGCTATGGGCGGGGAAAATAAAAGCGATGAGAAGGGAACTGTTTCTT
CTGAGCCAAAGGCTCTCAGTGATCAAATCACATCTTCTATGCGTGTTACC
AAAAACAAAATCGCCGATGATAAATCTTCTGACGTTATCACTGATGACGC
AACCAATGGCCGTAAGAAGCAAAAGAAAAATAAAAAGGCAAAAATTCGCC
CGTTGACCATGCCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAATGAG
TTAAAGGGCGTGACAGTCGACAATATGCAAATAAAACGAGACCACGAGGG
AAAGATTATGGCTCGCGTTGTTGTTAACTCAAAGAAATACGAAGCCGAGG
GTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTGCGAGAAGGCACTGCAG
GAAATCCTAACCACCAAAATGAAAGCTGTGTTGGACGGGCCAGGAAAGAG
CTTGGAAAGCGATGAGGATGATATACTCGAAAAGATGGCCTCTTATGCCA
TTCACAAACTTGGTGAGGAATGGAAGACCGATGATATTGATGTCGCAACC
CTGTATAATGACTTGAAGAACAAGCAGACGTCTGTTGTCGAGCCAAAGAA
GCCGTTGCCCGAAACATGGAAGAATATGCACCCTTGCATGGTTCTTAACT
ATATGCGCCCCCAGTGCACCTTTATAGTTTCAGGTGGCACTGGTACAAAC
C

BS16403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10630-PA 975 CG10630-RA 1..835 17..851 4175 100 Plus
CG12493-PA 891 CG12493-RA 377..493 468..584 385 93.1 Plus
CG12493-PA 891 CG12493-RA 254..359 345..450 330 92.4 Plus
CG12493-PA 891 CG12493-RA 518..584 609..675 160 89.5 Plus
CG12493-PA 891 CG12493-RA 669..698 766..795 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-RA 1268 CG10630-RA 111..945 17..851 4175 100 Plus
CG12493-RB 1164 CG12493-RB 370..870 345..851 1385 85.4 Plus
CG12493-RA 1173 CG12493-RA 379..879 345..851 1385 85.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5497846..5498561 851..136 3580 100 Minus
3L 28110227 3L 4752687..4753187 851..345 1310 84.8 Minus
3L 28110227 3L 5498728..5498848 137..17 605 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:24:23 has no hits.

BS16403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:32 Download gff for BS16403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10630-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:56 Download gff for BS16403.5prime
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 111..945 17..851 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:34 Download gff for BS16403.5prime
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 111..945 17..851 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:34 Download gff for BS16403.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5497846..5498559 138..851 100 <- Minus
3L 5498728..5498848 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:56 Download gff for BS16403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5490946..5491659 138..851 100 <- Minus
arm_3L 5491828..5491948 17..137 100   Minus

BS16403.complete Sequence

1006 bp assembled on 2008-08-15

GenBank Submission: KX802218

> BS16403.complete
GAAGTTATCAGTCGACATGGAAGCAAAGCAATTGTTGGCTGAAAGTTGTG
CAAAGGTGGACATCTTAGAGATGAAGAAGGCATTGATCCCAAATCCTTCT
GCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCGCAGATAATTTGAAGAA
AACTGCTATGGGCGGGGAAAATAAAAGCGATGAGAAGGGAACTGTTTCTT
CTGAGCCAAAGGCTCTCAGTGATCAAATCACATCTTCTATGCGTGTTACC
AAAAACAAAATCGCCGATGATAAATCTTCTGACGTTATCACTGATGACGC
AACCAATGGCCGTAAGAAGCAAAAGAAAAATAAAAAGGCAAAAATTCGCC
CGTTGACCATGCCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAATGAG
TTAAAGGGCGTGACAGTCGACAATATGCAAATAAAACGAGACCACGAGGG
AAAGATTATGGCTCGCGTTGTTGTTAACTCAAAGAAATACGAAGCCGAGG
GTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTGCGAGAAGGCACTGCAG
GAAATCCTAACCACCAAAATGAAAGCTGTGTTGGACGGGCCAGGAAAGAG
CTTGGAAAGCGATGAGGATGATATACTCGAAAAGATGGCCTCTTATGCCA
TTCACAAACTTGGTGAGGAATGGAAGACCGATGATATTGATGTCGCAACC
CTGTATAATGACTTGAAGAACAAGCAGACGTCTGTTGTCGAGCCAAAGAA
GCCGTTGCCCGAAACATGGAAGAATATGCACCCTTGCATGGTTCTTAACT
ATATGCGCCCCCAGTGCACCTTTATAGTTTCAGGTGGCACTGGTACAAAC
CAGAATAATACTTTCTCCATGAGCGTCTGTGTGGACAACTGCGAGTTTAA
TGCTGAAGGGCCATCCAAGAAGGCAGCCCGTTACAAACTATCCGCTTTAG
TTTGTAACAAACTATTTGGAACCGACTATCCACAAAAATAAAAGCTTCTA
GACCAT

BS16403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-RA 975 CG10630-PA 1..975 17..991 4875 100 Plus
CG12493-RB 882 CG12493-PB 245..876 345..985 1555 83.9 Plus
CG12493-RA 891 CG12493-PA 254..885 345..985 1555 83.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-RA 1268 CG10630-RA 111..1086 17..992 4880 100 Plus
CG12493-RB 1164 CG12493-RB 370..1001 345..985 1555 83.9 Plus
CG12493-RA 1173 CG12493-RA 379..1010 345..985 1555 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5497705..5498561 992..136 4285 100 Minus
3L 28110227 3L 4752556..4753187 985..345 1555 83.9 Minus
3L 28110227 3L 5498728..5498848 137..17 605 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:35:55 has no hits.

BS16403.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:24 Download gff for BS16403.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 83..1058 17..992 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:25 Download gff for BS16403.complete
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 111..1075 17..981 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:39 Download gff for BS16403.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 83..1047 17..981 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:14 Download gff for BS16403.complete
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 111..1075 17..981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:14 Download gff for BS16403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5497716..5498559 138..981 100 <- Minus
3L 5498728..5498848 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:25 Download gff for BS16403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5490816..5491659 138..981 100 <- Minus
arm_3L 5491828..5491948 17..137 100   Minus

BS16403.pep Sequence

Translation from 16 to 990

> BS16403.pep
MEAKQLLAESCAKVDILEMKKALIPNPSAEEDAVAVIPLADNLKKTAMGG
ENKSDEKGTVSSEPKALSDQITSSMRVTKNKIADDKSSDVITDDATNGRK
KQKKNKKAKIRPLTMPVTSKDALMVLNELKGVTVDNMQIKRDHEGKIMAR
VVVNSKKYEAEGSSVNSARNAACEKALQEILTTKMKAVLDGPGKSLESDE
DDILEKMASYAIHKLGEEWKTDDIDVATLYNDLKNKQTSVVEPKKPLPET
WKNMHPCMVLNYMRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPS
KKAARYKLSALVCNKLFGTDYPQK*

BS16403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-PA 324 CG10630-PA 1..324 1..324 1659 100 Plus
CG12493-PA 296 CG12493-PA 5..295 18..323 795 56.4 Plus
CG12493-PB 293 CG12493-PB 5..292 18..323 791 56.4 Plus
DIP1-PH 309 CG17686-PH 7..303 55..321 353 31 Plus
DIP1-PI 378 CG17686-PI 76..372 55..321 353 31 Plus