Clone Sequence Records
BS16405.3prime Sequence
201 bp (201 high quality bases) assembled on 2007-05-15
> BS16405.3prime
ATGGTCTAGAAAGCTTTTAGTTGCATGTGAACTTTGAACTTTCGAGCTGG
AAAGTGGAAGGCGGATTTGCATTTCCTATCGCTGCAGGTGTCTCACAAAG
AGAGAGGCTCTCTCGTATCCTCCGCCCCCGCTGCATTTTTTTCATTGCGC
AATGAGCGAGACGAATCGATAACTGCAAGGTTTCCATGTCGACTGATAAC
T
BS16405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30055-PA | 171 | CG30055-RA | 1..171 | 187..17 | 855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 15:55:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12590064..12590236 | 189..17 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:55:06 has no hits.
BS16405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:23 Download gff for
BS16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-PA | 1..171 | 17..187 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:39 Download gff for
BS16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590064..12590245 | 8..189 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:39 Download gff for
BS16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590064..12590245 | 8..189 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:40 Download gff for
BS16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477569..8477750 | 8..189 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:40 Download gff for
BS16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477569..8477750 | 8..189 | 97 | | Minus |
BS16405.5prime Sequence
201 bp (201 high quality bases) assembled on 2007-05-15
> BS16405.5prime
GAAGTTATCAGTCGACATGGAAACCTTGCAGTTATCGATTCGTCTCGCTC
ATTGCGCAATGAAAAAAATGCAGCGGGGGCGGAGGATACGAGAGAGCCTC
TCTCTTTGTGAGACACCTGCAGCGATAGGAAATGCAAATCCGCCTTCCAC
TTTCCAGCTCGAAAGTTCAAAGTTCACATGCAACTAAAAGCTTTCTAGAC
C
BS16405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30055-PA | 171 | CG30055-RA | 1..171 | 17..187 | 855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 15:00:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12590064..12590236 | 15..187 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:00:30 has no hits.
BS16405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:30 Download gff for
BS16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-PA | 1..171 | 17..187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:28 Download gff for
BS16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590064..12590245 | 15..196 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:28 Download gff for
BS16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590064..12590245 | 15..196 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:29 Download gff for
BS16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477569..8477750 | 15..196 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:29 Download gff for
BS16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477569..8477750 | 15..196 | 97 | | Plus |
BS16405.complete Sequence
203 bp assembled on 2007-05-07
GenBank Submission: FJ638138
> BS16405.complete
GAAGTTATCAGTCGACATGGAAACCTTGCAGTTATCGATTCGTCTCGCTC
ATTGCGCAATGAAAAAAATGCAGCGGGGGCGGAGGATACGAGAGAGCCTC
TCTCTTTGTGAGACACCTGCAGCGATAGGAAATGCAAATCCGCCTTCCAC
TTTCCAGCTCGAAAGTTCAAAGTTCACATGCAACTAAAAGCTTTCTAGAC
CAT
BS16405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 23:40:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 23:40:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12590064..12590236 | 15..187 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:40:22 has no hits.
BS16405.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:24 Download gff for
BS16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-RA | 1..171 | 17..187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:44 Download gff for
BS16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-RA | 762..943 | 15..196 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:24 Download gff for
BS16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-RA | 762..943 | 15..196 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:50 Download gff for
BS16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590066..12590234 | 17..185 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:50 Download gff for
BS16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590066..12590234 | 17..185 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:05 Download gff for
BS16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477571..8477739 | 17..185 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:05 Download gff for
BS16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477571..8477739 | 17..185 | 100 | | Plus |
BS16405.pep Sequence
Translation from 16 to 186
> BS16405.pep
METLQLSIRLAHCAMKKMQRGRRIRESLSLCETPAAIGNANPPSTFQLES
SKFTCN*
Sequence BS16405.pep has no blast hits.