Clone BS16406 Report

Search the DGRC for BS16406

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptash2-RB
Protein status:BS16406.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16406.3prime Sequence

884 bp (785 high quality bases) assembled on 2007-05-15

> BS16406.3prime
ATGGTCTAGAAAGCTTCTAAAGACCCATATTATCCAAGCGCAGACGTCCA
TCGTGTTCTGTGAGGTAGAGGGTGTCGGCTAAACATTGCTCTGTGATCAG
CTCCTCCACGCGATCGTGCATCCCCTTGGCTTTGTGCTCGACGAGCACCT
CGGGATACTTGAAGGCGGGTCCGAAGTTTACGCTGACCGTTGCACTTTTG
TGGATCGAGATGGCCGGGAAATAGCTGCCGGCATAAATGTCTTCGAATGC
CACACCCTGCGATTGACCGTTCTTAAAGAACTCGATGCGGCTGCCCTGCA
GGATGTGCAGATTTTTCAGGGTTTCTGTGATCTTGTCCTTATCCTCGTAG
TACAGATGAGACTTGAACTTGACCAGGGGCCGATCTTTGAATGTGTTGGG
CAGATAGTCGAGCGACGCCTCCTCTGGCAGCTCTATGAGGAATCCCAATG
TATCGCCCTCCACATAGGCATCACTGTAGTGTTTGCCATGGCTCTCGGTA
AACTTGGTGCCCTTGCGAGATCTCCAGGAGTAACCGAACTTGTCGTATCC
CAATGGAGCCTGCAAGTTGCCGTACTCCCGGCCCCAGCCAAGTCGCGTGG
CAGCTCCGTCGGGCATCTCTTCGATGGTGACCTCAAAGTACCAGCATCCC
CGGTTCACAGAGTGTGTGGCTCGGACCATGCAGTAACCACGTTCGCCCGT
CACCGCCAACCGATCCTCGCTTATTTTCAGCTGTGGTGCCCGATCATGCA
GCGCCAGGAGCACAGAATGTGGCACCAGGATGCGGTAAAGCCAGCCGGGG
ATAGGTTTGCCAGCCCCATCNGAGCTCTCGTCGAACTCCTGACGAAATGG
AGCATGTGGATCCGGTTCGGCGAGTATATAACGA

BS16406.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6677-PA 1872 ash2-RA 1005..1872 884..17 4271 99.6 Minus
CG6677-PB 1053 ash2-RB 186..1053 884..17 4271 99.6 Minus
CG6677-PC 1671 ash2-RC 804..1671 884..17 4271 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RE 1271 CG6677-RE 230..1097 884..17 4299 99.7 Minus
ash2-RC 1949 CG6677-RC 908..1775 884..17 4299 99.7 Minus
ash2-RB 1413 CG6677-RB 372..1239 884..17 4299 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24652310..24652590 660..380 1405 100 Minus
3R 32079331 3R 24652781..24653039 380..122 1295 100 Minus
3R 32079331 3R 24652018..24652241 884..661 1079 98.7 Minus
3R 32079331 3R 24653097..24653202 122..17 530 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:56:43 has no hits.

BS16406.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:28 Download gff for BS16406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6677-PC 805..1671 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:47 Download gff for BS16406.3prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 373..1239 17..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:33 Download gff for BS16406.3prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 373..1239 17..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:33 Download gff for BS16406.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24652019..24652241 661..883 98 -> Minus
3R 24652310..24652590 380..660 100 -> Minus
3R 24652782..24653039 122..379 100 -> Minus
3R 24653098..24653202 17..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:47 Download gff for BS16406.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20477741..20477963 661..883 98 -> Minus
arm_3R 20478032..20478312 380..660 100 -> Minus
arm_3R 20478504..20478761 122..379 100 -> Minus
arm_3R 20478820..20478924 17..121 100   Minus

BS16406.5prime Sequence

818 bp (767 high quality bases) assembled on 2007-05-15

> BS16406.5prime
GAAGTTATCAGTCGACATGGCGTCATCTTTTACGGACGAGGAGTCTTCCC
TCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACGGATTCGGGT
CCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGCCAATGTAAA
GTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACAAGGATGGCT
ATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTTCGTCAGGAG
TTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGGCTGGCTCTA
CCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATGATCGGGCAC
CACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGCGAACGTGGT
TACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATGCTGGTACTT
TGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGCGACTTGGCT
GGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTC
GGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGAGAGCCATGG
CAAACACTACAGTGATGCCTATGTGGAGGGCGATACATTGGGATTCCTCA
TAGAGCTGCCAGAGGAGGCGTCGCTCGACTATCTGCCCAACACATTCAAA
GATCGGCCCCTGGTCAAGTTCAAGTCTCATCTGTACTACGAGGATAAGGA
CAAGATCACAGAAACCCTGAAAAATCTGCACATCCTGCAGGGCAGCCGCA
TCGAGTTCTTTAAGAACG

BS16406.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6677-PB 1053 ash2-RB 1..802 17..818 4010 100 Plus
CG6677-PA 1872 ash2-RA 848..1621 45..818 3870 100 Plus
CG6677-PC 1671 ash2-RC 647..1420 45..818 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RB 1413 CG6677-RB 187..988 17..818 4010 100 Plus
ash2-RE 1271 CG6677-RE 73..846 45..818 3870 100 Plus
ash2-RC 1949 CG6677-RC 751..1524 45..818 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24651861..24652241 45..425 1905 100 Plus
3R 32079331 3R 24652310..24652590 426..706 1405 100 Plus
3R 32079331 3R 24652781..24652893 706..818 565 100 Plus
Blast to na_te.dros performed on 2015-02-13 11:55:07 has no hits.

BS16406.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:39 Download gff for BS16406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6677-PB 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:54 Download gff for BS16406.5prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 181..988 8..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:37 Download gff for BS16406.5prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 181..988 8..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:37 Download gff for BS16406.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24652782..24652893 707..818 100   Plus
3R 24651861..24652241 45..425 100 -> Plus
3R 24652310..24652590 426..706 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:54 Download gff for BS16406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20477583..20477963 45..425 100 -> Plus
arm_3R 20478032..20478312 426..706 100 -> Plus
arm_3R 20478504..20478615 707..818 100   Plus

BS16406.complete Sequence

1085 bp assembled on 2007-05-07

GenBank Submission: FJ638139

> BS16406.complete
GAAGTTATCAGTCGACATGGCGTCATCTTTTACGGACGAGGAGTCTTCCC
TCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACGGATTCGGGT
CCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGCCAATGTAAA
GTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACAAGGATGGCT
ATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTTCGTCAGGAG
TTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGGCTGGCTCTA
CCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATGATCGGGCAC
CACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGCGAACGTGGT
TACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATGCTGGTACTT
TGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGCGACTTGGCT
GGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTC
GGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGAGAGCCATGG
CAAACACTACAGTGATGCCTATGTGGAGGGCGATACATTGGGATTCCTCA
TAGAGCTGCCAGAGGAGGCGTCGCTCGACTATCTGCCCAACACATTCAAA
GATCGGCCCCTGGTCAAGTTCAAGTCTCATCTGTACTACGAGGATAAGGA
CAAGATCACAGAAACCCTGAAAAATCTGCACATCCTGCAGGGCAGCCGCA
TCGAGTTCTTTAAGAACGGTCAATCGCAGGGTGTGGCATTCGAAGACATT
TATGCCGGCAGCTATTTCCCGGCCATCTCGATCCACAAAAGTGCAACGGT
CAGCGTAAACTTCGGACCCGCCTTCAAGTATCCCGAGGTGCTCGTCGAGC
ACAAAGCCAAGGGGATGCACGATCGCGTGGAGGAGCTGATCACAGAGCAA
TGTTTAGCCGACACCCTCTACCTCACAGAACACGATGGACGTCTGCGCTT
GGATAATATGGGTCTTTAGAAGCTTTCTAGACCAT

BS16406.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RB 1053 CG6677-PB 1..1053 17..1069 5265 100 Plus
ash2-RC 1671 CG6677-PC 647..1671 45..1069 5125 100 Plus
ash2-RE 663 CG6677-PE 1..663 407..1069 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RB 1413 CG6677-RB 187..1239 17..1069 5265 100 Plus
ash2-RE 1271 CG6677-RE 73..1097 45..1069 5125 100 Plus
ash2-RC 1949 CG6677-RC 751..1775 45..1069 5125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24651861..24652241 45..425 1905 100 Plus
3R 32079331 3R 24652310..24652590 426..706 1405 100 Plus
3R 32079331 3R 24652781..24653039 706..964 1295 100 Plus
3R 32079331 3R 24653097..24653202 964..1069 530 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:07:46 has no hits.

BS16406.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:25 Download gff for BS16406.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 1..1053 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:46 Download gff for BS16406.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 71..1129 8..1069 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:43 Download gff for BS16406.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 187..1239 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:25 Download gff for BS16406.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 71..1129 8..1069 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:05 Download gff for BS16406.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 187..1239 17..1069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:05 Download gff for BS16406.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24651603..24651630 17..44 100 -> Plus
3R 24651861..24652241 45..425 100 -> Plus
3R 24652310..24652590 426..706 100 -> Plus
3R 24652782..24653039 707..964 100 -> Plus
3R 24653098..24653202 965..1069 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:43 Download gff for BS16406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20477325..20477352 17..44 100 -> Plus
arm_3R 20477583..20477963 45..425 100 -> Plus
arm_3R 20478032..20478312 426..706 100 -> Plus
arm_3R 20478504..20478761 707..964 100 -> Plus
arm_3R 20478820..20478924 965..1069 100   Plus

BS16406.pep Sequence

Translation from 16 to 1068

> BS16406.pep
MASSFTDEESSLSKNNRQKRKFPGTDSGPTGKKGRPSSDITANVKLPPHG
YPLEHPFNKDGYRYILAEPDPHAPFRQEFDESSDWAGKPIPGWLYRILVP
HSVLLALHDRAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWYFEVTIE
EMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESHGKHYSD
AYVEGDTLGFLIELPEEASLDYLPNTFKDRPLVKFKSHLYYEDKDKITET
LKNLHILQGSRIEFFKNGQSQGVAFEDIYAGSYFPAISIHKSATVSVNFG
PAFKYPEVLVEHKAKGMHDRVEELITEQCLADTLYLTEHDGRLRLDNMGL
*

BS16406.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-PB 350 CG6677-PB 1..350 1..350 1886 100 Plus
ash2-PC 556 CG6677-PC 215..556 9..350 1841 99.4 Plus
ash2-PE 220 CG6677-PE 1..220 131..350 1179 100 Plus