Clone Sequence Records
BS16406.3prime Sequence
884 bp (785 high quality bases) assembled on 2007-05-15
> BS16406.3prime
ATGGTCTAGAAAGCTTCTAAAGACCCATATTATCCAAGCGCAGACGTCCA
TCGTGTTCTGTGAGGTAGAGGGTGTCGGCTAAACATTGCTCTGTGATCAG
CTCCTCCACGCGATCGTGCATCCCCTTGGCTTTGTGCTCGACGAGCACCT
CGGGATACTTGAAGGCGGGTCCGAAGTTTACGCTGACCGTTGCACTTTTG
TGGATCGAGATGGCCGGGAAATAGCTGCCGGCATAAATGTCTTCGAATGC
CACACCCTGCGATTGACCGTTCTTAAAGAACTCGATGCGGCTGCCCTGCA
GGATGTGCAGATTTTTCAGGGTTTCTGTGATCTTGTCCTTATCCTCGTAG
TACAGATGAGACTTGAACTTGACCAGGGGCCGATCTTTGAATGTGTTGGG
CAGATAGTCGAGCGACGCCTCCTCTGGCAGCTCTATGAGGAATCCCAATG
TATCGCCCTCCACATAGGCATCACTGTAGTGTTTGCCATGGCTCTCGGTA
AACTTGGTGCCCTTGCGAGATCTCCAGGAGTAACCGAACTTGTCGTATCC
CAATGGAGCCTGCAAGTTGCCGTACTCCCGGCCCCAGCCAAGTCGCGTGG
CAGCTCCGTCGGGCATCTCTTCGATGGTGACCTCAAAGTACCAGCATCCC
CGGTTCACAGAGTGTGTGGCTCGGACCATGCAGTAACCACGTTCGCCCGT
CACCGCCAACCGATCCTCGCTTATTTTCAGCTGTGGTGCCCGATCATGCA
GCGCCAGGAGCACAGAATGTGGCACCAGGATGCGGTAAAGCCAGCCGGGG
ATAGGTTTGCCAGCCCCATCNGAGCTCTCGTCGAACTCCTGACGAAATGG
AGCATGTGGATCCGGTTCGGCGAGTATATAACGA
BS16406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6677-PA | 1872 | ash2-RA | 1005..1872 | 884..17 | 4271 | 99.6 | Minus |
CG6677-PB | 1053 | ash2-RB | 186..1053 | 884..17 | 4271 | 99.6 | Minus |
CG6677-PC | 1671 | ash2-RC | 804..1671 | 884..17 | 4271 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RE | 1271 | CG6677-RE | 230..1097 | 884..17 | 4299 | 99.7 | Minus |
ash2-RC | 1949 | CG6677-RC | 908..1775 | 884..17 | 4299 | 99.7 | Minus |
ash2-RB | 1413 | CG6677-RB | 372..1239 | 884..17 | 4299 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24652310..24652590 | 660..380 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 24652781..24653039 | 380..122 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 24652018..24652241 | 884..661 | 1079 | 98.7 | Minus |
3R | 32079331 | 3R | 24653097..24653202 | 122..17 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:56:43 has no hits.
BS16406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:28 Download gff for
BS16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6677-PC | 805..1671 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:47 Download gff for
BS16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 373..1239 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:33 Download gff for
BS16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 373..1239 | 17..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:33 Download gff for
BS16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24652019..24652241 | 661..883 | 98 | -> | Minus |
3R | 24652310..24652590 | 380..660 | 100 | -> | Minus |
3R | 24652782..24653039 | 122..379 | 100 | -> | Minus |
3R | 24653098..24653202 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:47 Download gff for
BS16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20477741..20477963 | 661..883 | 98 | -> | Minus |
arm_3R | 20478032..20478312 | 380..660 | 100 | -> | Minus |
arm_3R | 20478504..20478761 | 122..379 | 100 | -> | Minus |
arm_3R | 20478820..20478924 | 17..121 | 100 | | Minus |
BS16406.5prime Sequence
818 bp (767 high quality bases) assembled on 2007-05-15
> BS16406.5prime
GAAGTTATCAGTCGACATGGCGTCATCTTTTACGGACGAGGAGTCTTCCC
TCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACGGATTCGGGT
CCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGCCAATGTAAA
GTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACAAGGATGGCT
ATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTTCGTCAGGAG
TTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGGCTGGCTCTA
CCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATGATCGGGCAC
CACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGCGAACGTGGT
TACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATGCTGGTACTT
TGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGCGACTTGGCT
GGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTC
GGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGAGAGCCATGG
CAAACACTACAGTGATGCCTATGTGGAGGGCGATACATTGGGATTCCTCA
TAGAGCTGCCAGAGGAGGCGTCGCTCGACTATCTGCCCAACACATTCAAA
GATCGGCCCCTGGTCAAGTTCAAGTCTCATCTGTACTACGAGGATAAGGA
CAAGATCACAGAAACCCTGAAAAATCTGCACATCCTGCAGGGCAGCCGCA
TCGAGTTCTTTAAGAACG
BS16406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6677-PB | 1053 | ash2-RB | 1..802 | 17..818 | 4010 | 100 | Plus |
CG6677-PA | 1872 | ash2-RA | 848..1621 | 45..818 | 3870 | 100 | Plus |
CG6677-PC | 1671 | ash2-RC | 647..1420 | 45..818 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RB | 1413 | CG6677-RB | 187..988 | 17..818 | 4010 | 100 | Plus |
ash2-RE | 1271 | CG6677-RE | 73..846 | 45..818 | 3870 | 100 | Plus |
ash2-RC | 1949 | CG6677-RC | 751..1524 | 45..818 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24651861..24652241 | 45..425 | 1905 | 100 | Plus |
3R | 32079331 | 3R | 24652310..24652590 | 426..706 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 24652781..24652893 | 706..818 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:55:07 has no hits.
BS16406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:39 Download gff for
BS16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6677-PB | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:54 Download gff for
BS16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 181..988 | 8..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:37 Download gff for
BS16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 181..988 | 8..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:37 Download gff for
BS16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24652782..24652893 | 707..818 | 100 | | Plus |
3R | 24651861..24652241 | 45..425 | 100 | -> | Plus |
3R | 24652310..24652590 | 426..706 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:54 Download gff for
BS16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20477583..20477963 | 45..425 | 100 | -> | Plus |
arm_3R | 20478032..20478312 | 426..706 | 100 | -> | Plus |
arm_3R | 20478504..20478615 | 707..818 | 100 | | Plus |
BS16406.complete Sequence
1085 bp assembled on 2007-05-07
GenBank Submission: FJ638139
> BS16406.complete
GAAGTTATCAGTCGACATGGCGTCATCTTTTACGGACGAGGAGTCTTCCC
TCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACGGATTCGGGT
CCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGCCAATGTAAA
GTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACAAGGATGGCT
ATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTTCGTCAGGAG
TTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGGCTGGCTCTA
CCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATGATCGGGCAC
CACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGCGAACGTGGT
TACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATGCTGGTACTT
TGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGCGACTTGGCT
GGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTC
GGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGAGAGCCATGG
CAAACACTACAGTGATGCCTATGTGGAGGGCGATACATTGGGATTCCTCA
TAGAGCTGCCAGAGGAGGCGTCGCTCGACTATCTGCCCAACACATTCAAA
GATCGGCCCCTGGTCAAGTTCAAGTCTCATCTGTACTACGAGGATAAGGA
CAAGATCACAGAAACCCTGAAAAATCTGCACATCCTGCAGGGCAGCCGCA
TCGAGTTCTTTAAGAACGGTCAATCGCAGGGTGTGGCATTCGAAGACATT
TATGCCGGCAGCTATTTCCCGGCCATCTCGATCCACAAAAGTGCAACGGT
CAGCGTAAACTTCGGACCCGCCTTCAAGTATCCCGAGGTGCTCGTCGAGC
ACAAAGCCAAGGGGATGCACGATCGCGTGGAGGAGCTGATCACAGAGCAA
TGTTTAGCCGACACCCTCTACCTCACAGAACACGATGGACGTCTGCGCTT
GGATAATATGGGTCTTTAGAAGCTTTCTAGACCAT
BS16406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RB | 1053 | CG6677-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
ash2-RC | 1671 | CG6677-PC | 647..1671 | 45..1069 | 5125 | 100 | Plus |
ash2-RE | 663 | CG6677-PE | 1..663 | 407..1069 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RB | 1413 | CG6677-RB | 187..1239 | 17..1069 | 5265 | 100 | Plus |
ash2-RE | 1271 | CG6677-RE | 73..1097 | 45..1069 | 5125 | 100 | Plus |
ash2-RC | 1949 | CG6677-RC | 751..1775 | 45..1069 | 5125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24651861..24652241 | 45..425 | 1905 | 100 | Plus |
3R | 32079331 | 3R | 24652310..24652590 | 426..706 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 24652781..24653039 | 706..964 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 24653097..24653202 | 964..1069 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:07:46 has no hits.
BS16406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:25 Download gff for
BS16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 1..1053 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:46 Download gff for
BS16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 71..1129 | 8..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:43 Download gff for
BS16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 187..1239 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:25 Download gff for
BS16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 71..1129 | 8..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:05 Download gff for
BS16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 187..1239 | 17..1069 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:05 Download gff for
BS16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24651603..24651630 | 17..44 | 100 | -> | Plus |
3R | 24651861..24652241 | 45..425 | 100 | -> | Plus |
3R | 24652310..24652590 | 426..706 | 100 | -> | Plus |
3R | 24652782..24653039 | 707..964 | 100 | -> | Plus |
3R | 24653098..24653202 | 965..1069 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:43 Download gff for
BS16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20477325..20477352 | 17..44 | 100 | -> | Plus |
arm_3R | 20477583..20477963 | 45..425 | 100 | -> | Plus |
arm_3R | 20478032..20478312 | 426..706 | 100 | -> | Plus |
arm_3R | 20478504..20478761 | 707..964 | 100 | -> | Plus |
arm_3R | 20478820..20478924 | 965..1069 | 100 | | Plus |
BS16406.pep Sequence
Translation from 16 to 1068
> BS16406.pep
MASSFTDEESSLSKNNRQKRKFPGTDSGPTGKKGRPSSDITANVKLPPHG
YPLEHPFNKDGYRYILAEPDPHAPFRQEFDESSDWAGKPIPGWLYRILVP
HSVLLALHDRAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWYFEVTIE
EMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESHGKHYSD
AYVEGDTLGFLIELPEEASLDYLPNTFKDRPLVKFKSHLYYEDKDKITET
LKNLHILQGSRIEFFKNGQSQGVAFEDIYAGSYFPAISIHKSATVSVNFG
PAFKYPEVLVEHKAKGMHDRVEELITEQCLADTLYLTEHDGRLRLDNMGL
*
BS16406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-PB | 350 | CG6677-PB | 1..350 | 1..350 | 1886 | 100 | Plus |
ash2-PC | 556 | CG6677-PC | 215..556 | 9..350 | 1841 | 99.4 | Plus |
ash2-PE | 220 | CG6677-PE | 1..220 | 131..350 | 1179 | 100 | Plus |