Clone Sequence Records
BS16408.3prime Sequence
880 bp (755 high quality bases) assembled on 2007-05-15
> BS16408.3prime
ATGGTCTAGAAAGCTTTTATTCGCCAGGCTCGATGGCCACCAGTTCGTCA
AGGAGCTCAACCCTTCGCTGCAGTCCCTTCGAGTCCTTCTCACTGCCCCT
GACACCCTCCGCCACCCCGCCCCAACTAAAGGACCTATGCCCAGGATCCT
CCAGTCCATCGTCCTCGTACTCTTCGCAGATGTTGTGCATCGCACAGATG
CTCTCCACAATGAGGCGCACCTCGTTCAAATCCCGGGCCTCCAAAGCGTA
CAGGGTATTGAAACGTCGTGCCAAGGTGTCCAGTACCTGTTCCGCCAGCT
CGAAGGCGGGACGCAGCATTTCGTTGAACATCGCATCCTTGCGGAAGCAC
TCGGCCTCAATGGGCCGCATCAGGTAGGATTTGAGAGGAAACACATCGTT
TCCGATGAGATAGCTGCCCGCCGGCATGGTCCTCGGATTCAGGGCCAATG
TCTGGCCAATGGGTGAGTCCTCGAAGCTGTACTCCATGGCCAGCTCAACG
TAGCAGTCGACGATCTTTCGCTCGGCATTGCATATTAACTGGAGCACCAC
AGGCACATCGGCGTGCTCCGACTCCAGAAATACGTCCAGTCGCCTCAGCG
TTATTATGCCAAACAGTTCCCGAAAGCAGCGCAGTTTGTCCAGTCTCTGA
TATCCCTGCAGGGTGCTCCGCTGGGCCGCCAGTGAGTTTGGCCACTTAAT
AAAGCTCTCGTAATTATCGGAGATGCAGTGCCAGAATGCCCGCACCACCT
GCTGGCAGAGAGCCCAGGGCAGTCGAAACTTGCGGGCGATCTCCTCGAAG
TGCTCGTCGGTGGACAGCTTCCACAGGGCCAAGGACACCATGGTCTGCGC
CGGCGGACTGGGATAGCCTGGCAACCCGAT
BS16408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-PA | 1230 | CG32187-RA | 372..1230 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-RA | 1326 | CG32187-RA | 439..1303 | 880..16 | 4310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17804939..17805803 | 16..880 | 4310 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 16:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3517..3579 | 282..347 | 115 | 68.2 | Plus |
BS16408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:53 Download gff for
BS16408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-PA | 367..1230 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:16 Download gff for
BS16408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 439..1303 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:36 Download gff for
BS16408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 439..1303 | 16..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:36 Download gff for
BS16408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17804939..17805803 | 16..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:16 Download gff for
BS16408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17798039..17798903 | 16..880 | 99 | | Plus |
BS16408.5prime Sequence
842 bp (814 high quality bases) assembled on 2007-05-15
> BS16408.5prime
GAAGTTATCAGTCGACATGGAGGAACGCGCTGTGCTCGCTAACATTGCGT
CCATAATCACCAAGGACTTGCTGATTGATCAGCCGTCCGTGGACATCAAT
TCAGGCATTTATCCGCTGTTGACCTTCGACGAGGACGACGATGAGGCAGA
GATTTTCGCTTTGATGCAGCGAAAACGGGCGTTGGCTTCCGGCCGGAAGC
GCAGGAACTCCCAAGAACCGGAGGACCGGAAACAGGACCTAAAGATGCCC
AAGCTGGAGTGGCACCACCCGGAACTCAACCTACTGCACCGCTACACGGA
TGCCCAGTTCGAGTCCTACCTTCACATGCGCAAGCTAACATTCCTGAAAA
TCCAGCAAGCCCTAGAGAAAACTTTATGTGGAATCGCGTTGCCAGGCTAT
CCCAGTCCGCCGGCGCAGACCATGGTGTCCTTGGCCCTGTGGAAGCTGTC
CACCGACGAGCACTTCGAGGAGATCGCCCGCAAGTTTCGACTGCCCTGGG
CTCTCTGCCAGCAGGTGGTGCGGGCATTCTGGCACTGCATCTCCGATAAT
TACGAGAGCTTTATTAAGTGGCCAAACTCACTGGCGGCCCAGCGGAGCAC
CCTGCAGGGATATCAGAGACTGGACAAACTGCGCTGCTTTCGGGAACTGT
TTGGCATAATAACGCTGAGGCGACTGGACGTATTTCTGGAGTCGGAGCAC
GCCGATGTGCCTGTGGTGCTCCAGTTAATATGCAATGCCGAGCGAAAGAT
CGTCGACTGCTACGTTGAGCTGGCCATGGAGTACAGCTTCGAGGACTCAC
CCATTGGCCAGACATTGGCCCTGAATCCGAGGACCATGCCGG
BS16408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-PA | 1230 | CG32187-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-RA | 1326 | CG32187-RA | 72..898 | 16..842 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17805344..17805840 | 842..346 | 2485 | 100 | Minus |
| 3L | 28110227 | 3L | 17805964..17806294 | 346..16 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:57:38 has no hits.
BS16408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:27 Download gff for
BS16408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:59 Download gff for
BS16408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 62..898 | 5..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:39 Download gff for
BS16408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 62..898 | 5..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:39 Download gff for
BS16408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17805344..17805839 | 347..842 | 100 | <- | Minus |
| 3L | 17805964..17806304 | 5..346 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:59 Download gff for
BS16408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17798444..17798939 | 347..842 | 100 | <- | Minus |
| arm_3L | 17799064..17799404 | 5..346 | 98 | | Minus |
BS16408.complete Sequence
1262 bp assembled on 2007-05-07
GenBank Submission: FJ638141
> BS16408.complete
GAAGTTATCAGTCGACATGGAGGAACGCGCTGTGCTCGCTAACATTGCGT
CCATAATCACCAAGGACTTGCTGATTGATCAGCCGTCCGTGGACATCAAT
TCAGGCATTTATCCGCTGTTGACCTTCGACGAGGACGACGATGAGGCAGA
GATTTTCGCTTTGATGCAGCGAAAACGGGCGTTGGCTTCCGGCCGGAAGC
GCAGGAACTCCCAAGAACCGGAGGACCGGAAACAGGACCTAAAGATGCCC
AAGCTGGAGTGGCACCACCCGGAACTCAACCTACTGCACCGCTACACGGA
TGCCCAGTTCGAGTCCTACCTTCACATGCGCAAGCTAACATTCCTGAAAA
TCCAGCAAGCCCTAGAGAAAACTTTATGTGGAATCGCGTTGCCAGGCTAT
CCCAGTCCGCCGGCGCAGACCATGGTGTCCTTGGCCCTGTGGAAGCTGTC
CACCGACGAGCACTTCGAGGAGATCGCCCGCAAGTTTCGACTGCCCTGGG
CTCTCTGCCAGCAGGTGGTGCGGGCATTCTGGCACTGCATCTCCGATAAT
TACGAGAGCTTTATTAAGTGGCCAAACTCACTGGCGGCCCAGCGGAGCAC
CCTGCAGGGATATCAGAGACTGGACAAACTGCGCTGCTTTCGGGAACTGT
TTGGCATAATAACGCTGAGGCGACTGGACGTATTTCTGGAGTCGGAGCAC
GCCGATGTGCCTGTGGTGCTCCAGTTAATATGCAATGCCGAGCGAAAGAT
CGTCGACTGCTACGTTGAGCTGGCCATGGAGTACAGCTTCGAGGACTCAC
CCATTGGCCAGACATTGGCCCTGAATCCGAGGACCATGCCGGCGGGCAGC
TATCTCATCGGAAACGATGTGTTTCCTCTCAAATCCTACCTGATGCGGCC
CATTGAGGCCGAGTGCTTCCGCAAGGATGCGATGTTCAACGAAATGCTGC
GTCCCGCCTTCGAGCTGGCGGAACAGGTACTGGACACCTTGGCACGACGT
TTCAATACCCTGTACGCTTTGGAGGCCCGGGATTTGAACGAGGTGCGCCT
CATTGTGGAGAGCATCTGTGCGATGCACAACATCTGCGAAGAGTACGAGG
ACGATGGACTGGAGGATCCTGGGCATAGGTCCTTTAGTTGGGGCGGGGTG
GCGGAGGGTGTCAGGGGCAGTGAGAAGGACTCGAAGGGACTGCAGCGAAG
GGTTGAGCTCCTTGACGAACTGGTGGCCATCGAGCCTGGCGAATAAAAGC
TTTCTAGACCAT
BS16408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-RA | 1230 | CG32187-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-RA | 1326 | CG32187-RA | 72..1303 | 16..1247 | 6160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17804939..17805840 | 1247..346 | 4510 | 100 | Minus |
| 3L | 28110227 | 3L | 17805964..17806294 | 346..16 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:40 has no hits.
BS16408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:28 Download gff for
BS16408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:49 Download gff for
BS16408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 62..1302 | 5..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:48 Download gff for
BS16408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 73..1300 | 17..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:28 Download gff for
BS16408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 62..1302 | 5..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:14 Download gff for
BS16408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 73..1300 | 17..1244 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:14 Download gff for
BS16408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17804942..17805839 | 347..1244 | 100 | <- | Minus |
| 3L | 17805964..17806293 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:48 Download gff for
BS16408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17798042..17798939 | 347..1244 | 100 | <- | Minus |
| arm_3L | 17799064..17799393 | 17..346 | 100 | | Minus |
BS16408.pep Sequence
Translation from 16 to 1245
> BS16408.pep
MEERAVLANIASIITKDLLIDQPSVDINSGIYPLLTFDEDDDEAEIFALM
QRKRALASGRKRRNSQEPEDRKQDLKMPKLEWHHPELNLLHRYTDAQFES
YLHMRKLTFLKIQQALEKTLCGIALPGYPSPPAQTMVSLALWKLSTDEHF
EEIARKFRLPWALCQQVVRAFWHCISDNYESFIKWPNSLAAQRSTLQGYQ
RLDKLRCFRELFGIITLRRLDVFLESEHADVPVVLQLICNAERKIVDCYV
ELAMEYSFEDSPIGQTLALNPRTMPAGSYLIGNDVFPLKSYLMRPIEAEC
FRKDAMFNEMLRPAFELAEQVLDTLARRFNTLYALEARDLNEVRLIVESI
CAMHNICEEYEDDGLEDPGHRSFSWGGVAEGVRGSEKDSKGLQRRVELLD
ELVAIEPGE*
BS16408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-PA | 409 | CG32187-PA | 1..409 | 1..409 | 2133 | 100 | Plus |
