Clone Sequence Records
BS16409.5prime Sequence
270 bp (270 high quality bases) assembled on 2007-05-15
> BS16409.5prime
GAAGTTATCAGTCGACATGTATTGCCTACAATGCCTGCTGCCCGTACTAC
TGATACCGAAACCCTCGAATCCGGCCCTGATGGAAACGCACGTGATGTTC
ATAGTCCTCTACCTGGTCGGATTCTTCCTGGAGCGAAAGCCCTGCACCAT
CTGCAGCCTCGTATTCCTCACAGCCGTATCCCTGATATGCTACAGTGGCG
TCGGGAACTGCATATTTTGGGGCAACTGCGAGGGCCATCAATGTGAGAAT
GGCTAGAAGCTTTCTAGACC
BS16409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4867-PA | 240 | bc10-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bc10-RA | 1380 | CG4867-RA | 240..480 | 17..257 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5565625..5565865 | 17..257 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:29:42 has no hits.
BS16409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:36 Download gff for
BS16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4867-PA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:11 Download gff for
BS16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bc10-RA | 232..480 | 9..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:00:19 Download gff for
BS16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bc10-RA | 232..480 | 9..257 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:00:19 Download gff for
BS16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5565617..5565865 | 9..257 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:11 Download gff for
BS16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5558717..5558965 | 9..257 | 98 | | Plus |
BS16409.3prime Sequence
270 bp (270 high quality bases) assembled on 2007-05-15
> BS16409.3prime
ATGGTCTAGAAAGCTTCTAGCCATTCTCACATTGATGGCCCTCGCAGTTG
CCCCAAAATATGCAGTTCCCGACGCCACTGTAGCATATCAGGGATACGGC
TGTGAGGAATACGAGGCTGCAGATGGTGCAGGGCTTTCGCTCCAGGAAGA
ATCCGACCAGGTAGAGGACTATGAACATCACGTGCGTTTCCATCAGGGCC
GGATTCGAGGGTTTCGGTATCAGTAGTACGGGCAGCAGGCATTGTAGGCA
ATACATGTCGACTGATAACT
BS16409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4867-PA | 240 | bc10-RA | 1..240 | 256..17 | 1200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bc10-RA | 1380 | CG4867-RA | 240..480 | 256..16 | 1205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5565625..5565865 | 256..16 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:53:29 has no hits.
BS16409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:02 Download gff for
BS16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4867-PA | 1..240 | 17..256 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:47 Download gff for
BS16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bc10-RA | 232..480 | 16..264 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:29 Download gff for
BS16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bc10-RA | 232..480 | 16..264 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:29 Download gff for
BS16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5565617..5565865 | 16..264 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:47 Download gff for
BS16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5558717..5558965 | 16..264 | 98 | | Minus |
BS16409.complete Sequence
272 bp assembled on 2007-05-07
GenBank Submission: FJ638142
> BS16409.complete
GAAGTTATCAGTCGACATGTATTGCCTACAATGCCTGCTGCCCGTACTAC
TGATACCGAAACCCTCGAATCCGGCCCTGATGGAAACGCACGTGATGTTC
ATAGTCCTCTACCTGGTCGGATTCTTCCTGGAGCGAAAGCCCTGCACCAT
CTGCAGCCTCGTATTCCTCACAGCCGTATCCCTGATATGCTACAGTGGCG
TCGGGAACTGCATATTTTGGGGCAACTGCGAGGGCCATCAATGTGAGAAT
GGCTAGAAGCTTTCTAGACCAT
BS16409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bc10-RA | 240 | CG4867-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bc10-RA | 1380 | CG4867-RA | 240..480 | 17..257 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5565625..5565865 | 17..257 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:53:15 has no hits.
BS16409.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:11 Download gff for
BS16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bc10-RA | 229..477 | 9..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:32 Download gff for
BS16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bc10-RA | 240..479 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:53 Download gff for
BS16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bc10-RA | 240..479 | 17..256 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:53 Download gff for
BS16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5565625..5565864 | 17..256 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:32 Download gff for
BS16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5558725..5558964 | 17..256 | 100 | | Plus |
BS16409.pep Sequence
Translation from 16 to 255
> BS16409.pep
MYCLQCLLPVLLIPKPSNPALMETHVMFIVLYLVGFFLERKPCTICSLVF
LTAVSLICYSGVGNCIFWGNCEGHQCENG*
BS16409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bc10-PA | 79 | CG4867-PA | 1..79 | 1..79 | 440 | 100 | Plus |