Clone Sequence Records
BS16410.3prime Sequence
849 bp (734 high quality bases) assembled on 2007-05-15
> BS16410.3prime
ATGGTCTAGAAAGCTTCTAATCATCATTTACAGGTCCTTCAAAGGGAGCC
TTGCAACCAGCCTTTTCGTAAAACTCGAATGGCAGCGGATCCTCGTTGTC
GTAATAGTCGGAATCGCGGGCGCAACTGGGACCAAGTTCCATTTTCACCA
TCTTGTCGCGCCAAAAGTCGAGAAGCTCTTTGGTGAGAACCTCATCCCTC
AGATTGAAAATCCAACTGTTGTAGTCGTCGGGCCCATAGAAACCAGCATC
ACCCTTGTACTCCTGCAGCAGCTCGGCGGCCTTGTTTTGATCCTCCGCTG
AGGGTGTGCCATCGAAGAGCAGCTTCCAGATTATCTCCCTGGCGGCTGCC
GCTATCTTCTTCACGCTGGCCTGGTGAACGCTGTCCGGAACGATGATTTT
GGTCAGAACAAAGCGCTTCATTAGAGTTCGGTATTCCTCGAGCGGATTTT
CCTTGGTCAGGGTGGCCTCAAATTCGCCAGACAGAGCGGCGGCATCATCG
GCACTCAGTTCACCCGGAGTTGTAGGCGTCGCTGGCCCATCCTGATCCAG
CGAAGCCTGCTCCTCGAGTGCTGCGCGCACCTTTAAGCTGGCTGCAAATG
GAGCGGTACAACCGGCATGGGCATAGAACTCCAATGGCGGGGTGTCGTCG
CTGTCAAAGAGATCACTGTCGCGTGACCAACAGGGACCGAGTTGCTTCTT
CACCAGCACATCGCGCCAAAAGTCGAGGAGTTCCTTCTTTAGAACCTCAT
CCCTCAGCTTGACAATCCATTCGTTGTACGGCGTCGGGTCGTAGAAGCAG
GCGTCACCACGGTATTCCTCCAGCAATTGGCTGGCCTTCTCTGTGTTCG
BS16410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4930-PA | 1080 | CG4930-RA | 248..1080 | 849..17 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoGI-RC | 1438 | CG4930-RC | 357..1189 | 849..17 | 4165 | 100 | Minus |
EndoGI-RB | 1406 | CG4930-RB | 403..1235 | 849..17 | 4165 | 100 | Minus |
EndoGI-RA | 1360 | CG4930-RA | 357..1189 | 849..17 | 4165 | 100 | Minus |
EndoGI-RC | 1438 | CG4930-RC | 418..528 | 232..123 | 215 | 80.2 | Minus |
EndoGI-RC | 1438 | CG4930-RC | 974..1083 | 788..678 | 215 | 80.2 | Minus |
EndoGI-RB | 1406 | CG4930-RB | 464..574 | 232..123 | 215 | 80.2 | Minus |
EndoGI-RB | 1406 | CG4930-RB | 1020..1129 | 788..678 | 215 | 80.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16258430..16259262 | 849..17 | 4165 | 100 | Minus |
2L | 23513712 | 2L | 16259065..16259156 | 769..678 | 205 | 81.5 | Minus |
2L | 23513712 | 2L | 16258510..16258601 | 214..123 | 205 | 81.5 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:58:08 has no hits.
BS16410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:19 Download gff for
BS16410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4930-PA | 248..1080 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:17 Download gff for
BS16410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoGI-RA | 357..1192 | 14..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:29 Download gff for
BS16410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoGI-RA | 357..1192 | 14..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:29 Download gff for
BS16410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16258430..16259265 | 14..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:17 Download gff for
BS16410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16258430..16259265 | 14..849 | 99 | | Minus |
BS16410.5prime Sequence
818 bp (751 high quality bases) assembled on 2007-05-15
> BS16410.5prime
GAAGTTATCAGTCGACATGTCCAAGCGCAAGGCCGAGGACACACAATCCG
ACAAAATGGCAACGGCCGAGAAAGTAGCACAGAACGATTACACCATTGGC
CTGGTGGATCCCGTTAAGGATTACCAAAAGCTTATCGAAACACGCGTGCA
GGTAGACGAAATCGTGGATGATGATGTCACCAAGGAGAATTTCGATCGAA
CGGCTGCAGCGGCGCGTGACGTCATCTGGCGGCTGTTATTCGACGAGGCC
GGTACCTCGCAATCGAACACAGAGAAGGCCAGCCAATTGCTGGAGGAATA
CCGTGGTGACGCCTGCTTCTACGACCCGACGCCGTACAACGAATGGATTG
TCAAGCTGAGGGATGAGGTTCTAAAGAAGGAACTCCTCGACTTTTGGCGC
GATGTGCTGGTGAAGAAGCAACTCGGTCCCTGTTGGTCACGCGACAGTGA
TCTCTTTGACAGCGACGACACCCCGCCATTGGAGTTCTATGCCCATGCCG
GTTGTACCGCTCCATTTGCAGCCAGCTTAAAGGTGCGCGCAGCACTCGAG
GAGCAGGCTTCGCTGGATCAGGATGGGCCAGCGACGCCTACAACTCCGGG
TGAACTGAGTGCCGATGATGCCGCCGCTCTGTCTGGCGAATTTGAGGCCA
CCCTGACCAAGGAAAATCCGCTCGAGGAATACCGAACTCTAATGAAGCGC
TTTGTTCTGACCAAAATCATCGTTCCGGACAGCGTTCACCAGGCCAGCGT
GAAGAAGATAGCGGCAGCCGCCAGGGAGATAATCTGGAAGCTGCTCTTCG
ATGGCACACCCTCAGCGG
BS16410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4930-PA | 1080 | CG4930-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoGI-RC | 1438 | CG4930-RC | 110..911 | 17..818 | 4010 | 100 | Plus |
EndoGI-RB | 1406 | CG4930-RB | 156..957 | 17..818 | 4010 | 100 | Plus |
EndoGI-RA | 1360 | CG4930-RA | 110..911 | 17..818 | 4010 | 100 | Plus |
EndoGI-RC | 1438 | CG4930-RC | 974..1083 | 325..435 | 215 | 80.2 | Plus |
EndoGI-RB | 1406 | CG4930-RB | 1020..1129 | 325..435 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16258245..16258984 | 79..818 | 3700 | 100 | Plus |
2L | 23513712 | 2L | 16258114..16258179 | 17..82 | 330 | 100 | Plus |
2L | 23513712 | 2L | 16259065..16259156 | 344..435 | 205 | 81.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:54:31 has no hits.
BS16410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:26 Download gff for
BS16410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4930-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:37 Download gff for
BS16410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoGI-RA | 104..911 | 10..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:15 Download gff for
BS16410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoGI-RA | 104..911 | 10..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:15 Download gff for
BS16410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16258108..16258179 | 10..82 | 95 | -> | Plus |
2L | 16258249..16258984 | 83..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:37 Download gff for
BS16410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16258108..16258179 | 10..82 | 95 | -> | Plus |
arm_2L | 16258249..16258984 | 83..818 | 100 | | Plus |
BS16410.complete Sequence
1112 bp assembled on 2007-05-07
GenBank Submission: FJ638876
> BS16410.complete
GAAGTTATCAGTCGACATGTCCAAGCGCAAGGCCGAGGACACACAATCCG
ACAAAATGGCAACGGCCGAGAAAGTAGCACAGAACGATTACACCATTGGC
CTGGTGGATCCCGTTAAGGATTACCAAAAGCTTATCGAAACACGCGTGCA
GGTAGACGAAATCGTGGATGATGATGTCACCAAGGAGAATTTCGATCGAA
CGGCTGCAGCGGCGCGTGACGTCATCTGGCGGCTGTTATTCGACGAGGCC
GGTACCTCGCAATCGAACACAGAGAAGGCCAGCCAATTGCTGGAGGAATA
CCGTGGTGACGCCTGCTTCTACGACCCGACGCCGTACAACGAATGGATTG
TCAAGCTGAGGGATGAGGTTCTAAAGAAGGAACTCCTCGACTTTTGGCGC
GATGTGCTGGTGAAGAAGCAACTCGGTCCCTGTTGGTCACGCGACAGTGA
TCTCTTTGACAGCGACGACACCCCGCCATTGGAGTTCTATGCCCATGCCG
GTTGTACCGCTCCATTTGCAGCCAGCTTAAAGGTGCGCGCAGCACTCGAG
GAGCAGGCTTCGCTGGATCAGGATGGGCCAGCGACGCCTACAACTCCGGG
TGAACTGAGTGCCGATGATGCCGCCGCTCTGTCTGGCGAATTTGAGGCCA
CCCTGACCAAGGAAAATCCGCTCGAGGAATACCGAACTCTAATGAAGCGC
TTTGTTCTGACCAAAATCATCGTTCCGGACAGCGTTCACCAGGCCAGCGT
GAAGAAGATAGCGGCAGCCGCCAGGGAGATAATCTGGAAGCTGCTCTTCG
ATGGCACACCCTCAGCGGAGGATCAAAACAAGGCCGCCGAGCTGCTGCAG
GAGTACAAGGGTGATGCTGGTTTCTATGGGCCCGACGACTACAACAGTTG
GATTTTCAATCTGAGGGATGAGGTTCTCACCAAAGAGCTTCTCGACTTTT
GGCGCGACAAGATGGTGAAAATGGAACTTGGTCCCAGTTGCGCCCGCGAT
TCCGACTATTACGACAACGAGGATCCGCTGCCATTCGAGTTTTACGAAAA
GGCTGGTTGCAAGGCTCCCTTTGAAGGACCTGTAAATGATGATTAGAAGC
TTTCTAGACCAT
BS16410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoGI-RC | 1080 | CG4930-PC | 1..1080 | 17..1096 | 5400 | 100 | Plus |
EndoGI-RB | 1080 | CG4930-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
EndoGI-RA | 1080 | CG4930-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
EndoGI-RC | 1080 | CG4930-PC | 883..974 | 344..435 | 205 | 81.5 | Plus |
EndoGI-RC | 1080 | CG4930-PC | 328..419 | 899..990 | 205 | 81.5 | Plus |
EndoGI-RB | 1080 | CG4930-PB | 328..419 | 899..990 | 205 | 81.5 | Plus |
EndoGI-RB | 1080 | CG4930-PB | 883..974 | 344..435 | 205 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoGI-RC | 1438 | CG4930-RC | 110..1189 | 17..1096 | 5400 | 100 | Plus |
EndoGI-RB | 1406 | CG4930-RB | 156..1235 | 17..1096 | 5400 | 100 | Plus |
EndoGI-RA | 1360 | CG4930-RA | 110..1189 | 17..1096 | 5400 | 100 | Plus |
EndoGI-RC | 1438 | CG4930-RC | 437..528 | 899..990 | 205 | 81.5 | Plus |
EndoGI-RC | 1438 | CG4930-RC | 992..1083 | 344..435 | 205 | 81.5 | Plus |
EndoGI-RB | 1406 | CG4930-RB | 1038..1129 | 344..435 | 205 | 81.5 | Plus |
EndoGI-RB | 1406 | CG4930-RB | 483..574 | 899..990 | 205 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16258245..16259262 | 79..1096 | 5090 | 100 | Plus |
2L | 23513712 | 2L | 16258114..16258179 | 17..82 | 330 | 100 | Plus |
2L | 23513712 | 2L | 16258510..16258601 | 899..990 | 205 | 81.5 | Plus |
2L | 23513712 | 2L | 16259065..16259156 | 344..435 | 205 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:59:47 has no hits.
BS16410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:13 Download gff for
BS16410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4930-RA | 1..1080 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:27 Download gff for
BS16410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4930-RA | 116..1204 | 10..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:01 Download gff for
BS16410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoGI-RA | 110..1189 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:13 Download gff for
BS16410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4930-RA | 116..1204 | 10..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:01 Download gff for
BS16410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoGI-RA | 110..1189 | 17..1096 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:01 Download gff for
BS16410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16258114..16258179 | 17..82 | 100 | -> | Plus |
2L | 16258249..16259262 | 83..1096 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:01 Download gff for
BS16410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16258114..16258179 | 17..82 | 100 | -> | Plus |
arm_2L | 16258249..16259262 | 83..1096 | 100 | | Plus |
BS16410.pep Sequence
Translation from 16 to 1095
> BS16410.pep
MSKRKAEDTQSDKMATAEKVAQNDYTIGLVDPVKDYQKLIETRVQVDEIV
DDDVTKENFDRTAAAARDVIWRLLFDEAGTSQSNTEKASQLLEEYRGDAC
FYDPTPYNEWIVKLRDEVLKKELLDFWRDVLVKKQLGPCWSRDSDLFDSD
DTPPLEFYAHAGCTAPFAASLKVRAALEEQASLDQDGPATPTTPGELSAD
DAAALSGEFEATLTKENPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAA
AAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWIFNLR
DEVLTKELLDFWRDKMVKMELGPSCARDSDYYDNEDPLPFEFYEKAGCKA
PFEGPVNDD*
BS16410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoGI-PC | 359 | CG4930-PC | 1..359 | 1..359 | 1890 | 100 | Plus |
EndoGI-PB | 359 | CG4930-PB | 1..359 | 1..359 | 1890 | 100 | Plus |
EndoGI-PA | 359 | CG4930-PA | 1..359 | 1..359 | 1890 | 100 | Plus |