Clone BS16410 Report

Search the DGRC for BS16410

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptEndoGI-RA
Protein status:BS16410.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16410.3prime Sequence

849 bp (734 high quality bases) assembled on 2007-05-15

> BS16410.3prime
ATGGTCTAGAAAGCTTCTAATCATCATTTACAGGTCCTTCAAAGGGAGCC
TTGCAACCAGCCTTTTCGTAAAACTCGAATGGCAGCGGATCCTCGTTGTC
GTAATAGTCGGAATCGCGGGCGCAACTGGGACCAAGTTCCATTTTCACCA
TCTTGTCGCGCCAAAAGTCGAGAAGCTCTTTGGTGAGAACCTCATCCCTC
AGATTGAAAATCCAACTGTTGTAGTCGTCGGGCCCATAGAAACCAGCATC
ACCCTTGTACTCCTGCAGCAGCTCGGCGGCCTTGTTTTGATCCTCCGCTG
AGGGTGTGCCATCGAAGAGCAGCTTCCAGATTATCTCCCTGGCGGCTGCC
GCTATCTTCTTCACGCTGGCCTGGTGAACGCTGTCCGGAACGATGATTTT
GGTCAGAACAAAGCGCTTCATTAGAGTTCGGTATTCCTCGAGCGGATTTT
CCTTGGTCAGGGTGGCCTCAAATTCGCCAGACAGAGCGGCGGCATCATCG
GCACTCAGTTCACCCGGAGTTGTAGGCGTCGCTGGCCCATCCTGATCCAG
CGAAGCCTGCTCCTCGAGTGCTGCGCGCACCTTTAAGCTGGCTGCAAATG
GAGCGGTACAACCGGCATGGGCATAGAACTCCAATGGCGGGGTGTCGTCG
CTGTCAAAGAGATCACTGTCGCGTGACCAACAGGGACCGAGTTGCTTCTT
CACCAGCACATCGCGCCAAAAGTCGAGGAGTTCCTTCTTTAGAACCTCAT
CCCTCAGCTTGACAATCCATTCGTTGTACGGCGTCGGGTCGTAGAAGCAG
GCGTCACCACGGTATTCCTCCAGCAATTGGCTGGCCTTCTCTGTGTTCG

BS16410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4930-PA 1080 CG4930-RA 248..1080 849..17 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
EndoGI-RC 1438 CG4930-RC 357..1189 849..17 4165 100 Minus
EndoGI-RB 1406 CG4930-RB 403..1235 849..17 4165 100 Minus
EndoGI-RA 1360 CG4930-RA 357..1189 849..17 4165 100 Minus
EndoGI-RC 1438 CG4930-RC 418..528 232..123 215 80.2 Minus
EndoGI-RC 1438 CG4930-RC 974..1083 788..678 215 80.2 Minus
EndoGI-RB 1406 CG4930-RB 464..574 232..123 215 80.2 Minus
EndoGI-RB 1406 CG4930-RB 1020..1129 788..678 215 80.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16258430..16259262 849..17 4165 100 Minus
2L 23513712 2L 16259065..16259156 769..678 205 81.5 Minus
2L 23513712 2L 16258510..16258601 214..123 205 81.5 Minus
Blast to na_te.dros performed on 2015-02-04 20:58:08 has no hits.

BS16410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:19 Download gff for BS16410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4930-PA 248..1080 17..849 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:17 Download gff for BS16410.3prime
Subject Subject Range Query Range Percent Splice Strand
EndoGI-RA 357..1192 14..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:29 Download gff for BS16410.3prime
Subject Subject Range Query Range Percent Splice Strand
EndoGI-RA 357..1192 14..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:29 Download gff for BS16410.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16258430..16259265 14..849 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:17 Download gff for BS16410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16258430..16259265 14..849 99   Minus

BS16410.5prime Sequence

818 bp (751 high quality bases) assembled on 2007-05-15

> BS16410.5prime
GAAGTTATCAGTCGACATGTCCAAGCGCAAGGCCGAGGACACACAATCCG
ACAAAATGGCAACGGCCGAGAAAGTAGCACAGAACGATTACACCATTGGC
CTGGTGGATCCCGTTAAGGATTACCAAAAGCTTATCGAAACACGCGTGCA
GGTAGACGAAATCGTGGATGATGATGTCACCAAGGAGAATTTCGATCGAA
CGGCTGCAGCGGCGCGTGACGTCATCTGGCGGCTGTTATTCGACGAGGCC
GGTACCTCGCAATCGAACACAGAGAAGGCCAGCCAATTGCTGGAGGAATA
CCGTGGTGACGCCTGCTTCTACGACCCGACGCCGTACAACGAATGGATTG
TCAAGCTGAGGGATGAGGTTCTAAAGAAGGAACTCCTCGACTTTTGGCGC
GATGTGCTGGTGAAGAAGCAACTCGGTCCCTGTTGGTCACGCGACAGTGA
TCTCTTTGACAGCGACGACACCCCGCCATTGGAGTTCTATGCCCATGCCG
GTTGTACCGCTCCATTTGCAGCCAGCTTAAAGGTGCGCGCAGCACTCGAG
GAGCAGGCTTCGCTGGATCAGGATGGGCCAGCGACGCCTACAACTCCGGG
TGAACTGAGTGCCGATGATGCCGCCGCTCTGTCTGGCGAATTTGAGGCCA
CCCTGACCAAGGAAAATCCGCTCGAGGAATACCGAACTCTAATGAAGCGC
TTTGTTCTGACCAAAATCATCGTTCCGGACAGCGTTCACCAGGCCAGCGT
GAAGAAGATAGCGGCAGCCGCCAGGGAGATAATCTGGAAGCTGCTCTTCG
ATGGCACACCCTCAGCGG

BS16410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4930-PA 1080 CG4930-RA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
EndoGI-RC 1438 CG4930-RC 110..911 17..818 4010 100 Plus
EndoGI-RB 1406 CG4930-RB 156..957 17..818 4010 100 Plus
EndoGI-RA 1360 CG4930-RA 110..911 17..818 4010 100 Plus
EndoGI-RC 1438 CG4930-RC 974..1083 325..435 215 80.2 Plus
EndoGI-RB 1406 CG4930-RB 1020..1129 325..435 215 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16258245..16258984 79..818 3700 100 Plus
2L 23513712 2L 16258114..16258179 17..82 330 100 Plus
2L 23513712 2L 16259065..16259156 344..435 205 81.5 Plus
Blast to na_te.dros performed on 2015-02-13 11:54:31 has no hits.

BS16410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:26 Download gff for BS16410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4930-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:37 Download gff for BS16410.5prime
Subject Subject Range Query Range Percent Splice Strand
EndoGI-RA 104..911 10..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:15 Download gff for BS16410.5prime
Subject Subject Range Query Range Percent Splice Strand
EndoGI-RA 104..911 10..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:15 Download gff for BS16410.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16258108..16258179 10..82 95 -> Plus
2L 16258249..16258984 83..818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:37 Download gff for BS16410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16258108..16258179 10..82 95 -> Plus
arm_2L 16258249..16258984 83..818 100   Plus

BS16410.complete Sequence

1112 bp assembled on 2007-05-07

GenBank Submission: FJ638876

> BS16410.complete
GAAGTTATCAGTCGACATGTCCAAGCGCAAGGCCGAGGACACACAATCCG
ACAAAATGGCAACGGCCGAGAAAGTAGCACAGAACGATTACACCATTGGC
CTGGTGGATCCCGTTAAGGATTACCAAAAGCTTATCGAAACACGCGTGCA
GGTAGACGAAATCGTGGATGATGATGTCACCAAGGAGAATTTCGATCGAA
CGGCTGCAGCGGCGCGTGACGTCATCTGGCGGCTGTTATTCGACGAGGCC
GGTACCTCGCAATCGAACACAGAGAAGGCCAGCCAATTGCTGGAGGAATA
CCGTGGTGACGCCTGCTTCTACGACCCGACGCCGTACAACGAATGGATTG
TCAAGCTGAGGGATGAGGTTCTAAAGAAGGAACTCCTCGACTTTTGGCGC
GATGTGCTGGTGAAGAAGCAACTCGGTCCCTGTTGGTCACGCGACAGTGA
TCTCTTTGACAGCGACGACACCCCGCCATTGGAGTTCTATGCCCATGCCG
GTTGTACCGCTCCATTTGCAGCCAGCTTAAAGGTGCGCGCAGCACTCGAG
GAGCAGGCTTCGCTGGATCAGGATGGGCCAGCGACGCCTACAACTCCGGG
TGAACTGAGTGCCGATGATGCCGCCGCTCTGTCTGGCGAATTTGAGGCCA
CCCTGACCAAGGAAAATCCGCTCGAGGAATACCGAACTCTAATGAAGCGC
TTTGTTCTGACCAAAATCATCGTTCCGGACAGCGTTCACCAGGCCAGCGT
GAAGAAGATAGCGGCAGCCGCCAGGGAGATAATCTGGAAGCTGCTCTTCG
ATGGCACACCCTCAGCGGAGGATCAAAACAAGGCCGCCGAGCTGCTGCAG
GAGTACAAGGGTGATGCTGGTTTCTATGGGCCCGACGACTACAACAGTTG
GATTTTCAATCTGAGGGATGAGGTTCTCACCAAAGAGCTTCTCGACTTTT
GGCGCGACAAGATGGTGAAAATGGAACTTGGTCCCAGTTGCGCCCGCGAT
TCCGACTATTACGACAACGAGGATCCGCTGCCATTCGAGTTTTACGAAAA
GGCTGGTTGCAAGGCTCCCTTTGAAGGACCTGTAAATGATGATTAGAAGC
TTTCTAGACCAT

BS16410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
EndoGI-RC 1080 CG4930-PC 1..1080 17..1096 5400 100 Plus
EndoGI-RB 1080 CG4930-PB 1..1080 17..1096 5400 100 Plus
EndoGI-RA 1080 CG4930-PA 1..1080 17..1096 5400 100 Plus
EndoGI-RC 1080 CG4930-PC 883..974 344..435 205 81.5 Plus
EndoGI-RC 1080 CG4930-PC 328..419 899..990 205 81.5 Plus
EndoGI-RB 1080 CG4930-PB 328..419 899..990 205 81.5 Plus
EndoGI-RB 1080 CG4930-PB 883..974 344..435 205 81.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
EndoGI-RC 1438 CG4930-RC 110..1189 17..1096 5400 100 Plus
EndoGI-RB 1406 CG4930-RB 156..1235 17..1096 5400 100 Plus
EndoGI-RA 1360 CG4930-RA 110..1189 17..1096 5400 100 Plus
EndoGI-RC 1438 CG4930-RC 437..528 899..990 205 81.5 Plus
EndoGI-RC 1438 CG4930-RC 992..1083 344..435 205 81.5 Plus
EndoGI-RB 1406 CG4930-RB 1038..1129 344..435 205 81.5 Plus
EndoGI-RB 1406 CG4930-RB 483..574 899..990 205 81.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16258245..16259262 79..1096 5090 100 Plus
2L 23513712 2L 16258114..16258179 17..82 330 100 Plus
2L 23513712 2L 16258510..16258601 899..990 205 81.5 Plus
2L 23513712 2L 16259065..16259156 344..435 205 81.5 Plus
Blast to na_te.dros performed on 2014-11-28 00:59:47 has no hits.

BS16410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:13 Download gff for BS16410.complete
Subject Subject Range Query Range Percent Splice Strand
CG4930-RA 1..1080 17..1096 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:27 Download gff for BS16410.complete
Subject Subject Range Query Range Percent Splice Strand
CG4930-RA 116..1204 10..1099 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:01 Download gff for BS16410.complete
Subject Subject Range Query Range Percent Splice Strand
EndoGI-RA 110..1189 17..1096 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:13 Download gff for BS16410.complete
Subject Subject Range Query Range Percent Splice Strand
CG4930-RA 116..1204 10..1099 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:01 Download gff for BS16410.complete
Subject Subject Range Query Range Percent Splice Strand
EndoGI-RA 110..1189 17..1096 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:01 Download gff for BS16410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16258114..16258179 17..82 100 -> Plus
2L 16258249..16259262 83..1096 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:01 Download gff for BS16410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16258114..16258179 17..82 100 -> Plus
arm_2L 16258249..16259262 83..1096 100   Plus

BS16410.pep Sequence

Translation from 16 to 1095

> BS16410.pep
MSKRKAEDTQSDKMATAEKVAQNDYTIGLVDPVKDYQKLIETRVQVDEIV
DDDVTKENFDRTAAAARDVIWRLLFDEAGTSQSNTEKASQLLEEYRGDAC
FYDPTPYNEWIVKLRDEVLKKELLDFWRDVLVKKQLGPCWSRDSDLFDSD
DTPPLEFYAHAGCTAPFAASLKVRAALEEQASLDQDGPATPTTPGELSAD
DAAALSGEFEATLTKENPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAA
AAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWIFNLR
DEVLTKELLDFWRDKMVKMELGPSCARDSDYYDNEDPLPFEFYEKAGCKA
PFEGPVNDD*

BS16410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
EndoGI-PC 359 CG4930-PC 1..359 1..359 1890 100 Plus
EndoGI-PB 359 CG4930-PB 1..359 1..359 1890 100 Plus
EndoGI-PA 359 CG4930-PA 1..359 1..359 1890 100 Plus