Clone Sequence Records
BS16411.complete Sequence
1322 bp assembled on 2009-12-08
GenBank Submission: KX806042
> BS16411.complete
GAAGTTATCAGTCGACATGGGAAAGAAGCTGGATGTGGTTGTCTTCGGGA
CGGCAAACATCGAATATATAACATATGTCCCGGAATTGCCGAAACCCGGT
GAACTTGTCGCCGGAACGTACATGGAGACCTGTTTCGGTGGCAAGGGAGC
CAATCAGTGTGTGGCAGCTGCCAAATTGGGGGCCTCCACCGTCCTGGTCG
CCAAGTTGGGCAAGGACGAATCGGGCGATGACTACCTAAACCACCTGCAA
CAGCACGAGGTTGATGTGACGCACGTCCAGCAGGTGGAGAACAATCCCAC
GGGCATGAGTGAAATCGCGGTTTCTGAGAATGGAGATCAGTACAAGATCA
ACGTGGCTGGTGCGAATGTATTTCTCACGGCCAAGGATGTGACCCGGGCT
AAGAAGTCCTTTCAGGATGCGAAGGTGCTTCTCTGCCAACTGGAAACGGA
TATGAATGCCACCATGTGTGCGTTGCGTCAGTTCAAGGGGGTTTCCCTGC
TCCACATGTCGCCAATGCGAAAAGATATTCCAAATGCCATGATTGGCTTG
CCTACTATTCTGGTTGCGAATCAAGAGGCAGCTGCCAACCTAACCGATAT
GGAAGAAGTGTTAACCCCTGATCAGGCGCGAAAAGCAGCTGAAACTCTTA
TCGCAAAGGGAGCCAAGAGCGTGATCATTACCATGGGCGAGCAAGGAGCC
GTTTACATGTCCAAGAAGAGCAAAGATATGTGCACCCATGTGCCCGCCTC
CGATGTGCCGCACTTGGCCGATCCCTCGGGTGCCGGTGATGCCTTTATGG
GCAGCTTGGCCTATCACATAGCTCGATTTCCCAAACTGTCCACAGAACAT
CATATCAGTGCGGCACACTCCTGCGCCGCCTACTCCATGGGCCGCCGCGG
CACTCAGCCAAGTTTTCCGGGCAAGGAAAGCGCCAAAAGTGACCTATGCT
ATTCGACGCCCACGTTTAGTGTCATTCCACCTTCTAGTCCGCAACATGAA
GATGATAATATGGTAACAAAGACGCCACCGCCTTCAATGGTAGTCCCTAC
GCCCGAAGAAGCACACTCCCAAAAGGAAGTTGTGGAAGAACCGCAAAAAC
CTGCACCTCCTCCACCGGAGGATCCGGTTGTGGAAGCACCTCCACCAACG
ACCTCCGAGGAACCTCCGAAAGCAGTGGAAACCTCCAATGAACCTCCAAA
GCCTGCGGAGACCACTGATGAACCTCCAAAGCCTGCGGAGACCGCAGATC
AAGCTCCTGTGAAACCCGTGGAGACTGCTAATGAGCCACCTGCCAACAAA
GCATAAAAGCTTTCTAGACCAT
BS16411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17010-RA | 1290 | CG17010-PA | 1..1290 | 17..1306 | 6450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17010-RA | 1413 | CG17010-RA | 97..1386 | 17..1306 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12356646..12357879 | 73..1306 | 6170 | 100 | Plus |
| 2L | 23513712 | 2L | 12356537..12356592 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:48:16 has no hits.
BS16411.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:31 Download gff for
BS16411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17010-RA | 97..1384 | 17..1304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:16 Download gff for
BS16411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17010-RA | 97..1384 | 17..1304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:50 Download gff for
BS16411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17010-RA | 97..1384 | 17..1304 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:10 Download gff for
BS16411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17010-RA | 97..1384 | 17..1304 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:10 Download gff for
BS16411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12356537..12356592 | 17..72 | 100 | -> | Plus |
| 2L | 12356646..12357877 | 73..1304 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:16 Download gff for
BS16411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12356537..12356592 | 17..72 | 100 | -> | Plus |
| arm_2L | 12356646..12357877 | 73..1304 | 100 | | Plus |
BS16411.5prime Sequence
777 bp (713 high quality bases) assembled on 2007-05-15
> BS16411.5prime
GAAGTTATCAGTCGACATGGGAAAGAAGCTGGATGTGGTTGTCTTCGGGA
CGGCAAACATCGAATATATAACATATGTCCCGGAATTGCCGAAACCCGGT
GAACTTGTCGCCGGAACGTACATGGAGACCTGTTTCGGTGGCAAGGGAGC
CAATCAGTGTGTGGCAGCTGCCAAATTGGGGGCCTCCACCGTCCTGGTCG
CCAAGTTGGGCAAGGACGAATCGGGCGATGACTACCTAAACCACCTGCAA
CAGCACGAGGTTGATGTGACGCACGTCCAGCAGGTGGAGAACAATCCCAC
GGGCATGAGTGAAATCGCGGTTTCTGAGAATGGAGATCAGTACAAGATCA
ACGTGGCTGGTGCGAATGTATTTCTCACGGCCAAGGATGTGACCCGGGCT
AAGAAGTCCTTTCAGGATGCGAAGGTGCTTCTCTGCCAACTGGAAACGGA
TATGAATGCCACCATGTGTGCGTTGCGTCAGTTCAAGGGGGTTTCCCTGC
TCCACATGTCGCCAATGCGAAAAGATATTCCAAATGCCATGATTGGCTTG
CCTACTATTCTGGTTGCGAATCAAGAGGCAGCTGCCAACCTAACCGATAT
GGAAGAAGTGTTAACCCCTGATCAGGCGCGAAAAGCAGCTGAAACTCTTA
TCGCAAAGGGAGCCAAGAGCGTGATCATTACCATGGGCGAGCAAGGAGCC
GTTTACATGTCCAAGAAGAGCAAAGATATGTGCACCCATGTGCCCGCCTC
CGATGTGCCGCACTTGGCCGATCCCTC
BS16411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17010-PA | 1290 | CG17010-RA | 1..761 | 17..777 | 3805 | 100 | Plus |
| CG17010-PB | 753 | CG17010-RB | 1..373 | 17..389 | 1865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17010-RA | 1413 | CG17010-RA | 97..857 | 17..777 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12356646..12357350 | 73..777 | 3525 | 100 | Plus |
| 2L | 23513712 | 2L | 12356537..12356592 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:54:52 has no hits.
BS16411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:35 Download gff for
BS16411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17010-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:47 Download gff for
BS16411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17010-RA | 93..857 | 12..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:28 Download gff for
BS16411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17010-RA | 93..857 | 12..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:28 Download gff for
BS16411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12356533..12356592 | 12..72 | 96 | -> | Plus |
| 2L | 12356646..12357350 | 73..777 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:47 Download gff for
BS16411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12356533..12356592 | 12..72 | 96 | -> | Plus |
| arm_2L | 12356646..12357350 | 73..777 | 100 | | Plus |
BS16411.pep Sequence
Translation from 16 to 1305
> BS16411.pep
MGKKLDVVVFGTANIEYITYVPELPKPGELVAGTYMETCFGGKGANQCVA
AAKLGASTVLVAKLGKDESGDDYLNHLQQHEVDVTHVQQVENNPTGMSEI
AVSENGDQYKINVAGANVFLTAKDVTRAKKSFQDAKVLLCQLETDMNATM
CALRQFKGVSLLHMSPMRKDIPNAMIGLPTILVANQEAAANLTDMEEVLT
PDQARKAAETLIAKGAKSVIITMGEQGAVYMSKKSKDMCTHVPASDVPHL
ADPSGAGDAFMGSLAYHIARFPKLSTEHHISAAHSCAAYSMGRRGTQPSF
PGKESAKSDLCYSTPTFSVIPPSSPQHEDDNMVTKTPPPSMVVPTPEEAH
SQKEVVEEPQKPAPPPPEDPVVEAPPPTTSEEPPKAVETSNEPPKPAETT
DEPPKPAETADQAPVKPVETANEPPANKA*
BS16411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17010-PA | 429 | CG17010-PA | 1..429 | 1..429 | 2239 | 100 | Plus |
| CG13369-PA | 304 | CG13369-PA | 5..302 | 6..301 | 685 | 48 | Plus |
