Clone BS16413 Report

Search the DGRC for BS16413

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptalien-RA
Protein status:BS16413.pep: full length peptide match
Sequenced Size:1367

Clone Sequence Records

BS16413.complete Sequence

1367 bp assembled on 2009-12-08

GenBank Submission: KX803881

> BS16413.complete
GAAGTTATCAGTCGACATGTCCGACAACGATGATGATTTTATGTGCGACG
ATGATGAGGACTATGGATTGGAATATTCCGAAGATAGCAACTCGGAACCG
GATGTGGATTTGGAGAATCAGTACTACAACAGCAAGGCTCTGAAGGAGGA
GGAGCCCAAAGCGGCGCTGGCCAGTTTCCAAAAGGTGCTCGACCTGGAAA
ATGGCGAAAAAGGAGAGTGGGGCTTCAAGGCGCTGAAGCAGATGATCAAG
ATCAACTTTAGGCTGTGCAACTATGATGAAATGATGGTGCGCTATAAGCA
GCTACTCACCTACATCAAGAGTGCCGTCACCAGGAACCATTCGGAAAAGA
GCATCAATTCGATCCTGGACTACATATCCACATCGAAGAATATGGCACTG
CTCCAAAACTTTTACGAGACCACTCTGGATGCTTTGCGGGATGCGAAAAA
CGATCGGCTGTGGTTTAAGACCAACACCAAGCTGGGCAAACTCTACTTCG
ACCGCAGTGACTTTACCAAGCTGCAGAAGATACTAAAGCAACTGCATCAA
AGCTGTCAGACGGACGATGGCGAGGACGATCTGAAGAAGGGCACTCAGCT
CCTGGAAATCTATGCCCTGGAGATTCAGATGTATACGGTGCAGAAGAACA
ACAAAAAACTTAAGGCCCTCTATGAACAGTCACTCCACATCAAGTCGGCC
ATTCCCCATCCCCTAATCATGGGTGTGATCCGTGAGTGCGGCGGTAAAAT
GCATCTACGAGAAGGCGAGTTCGAAAAGGCACACACGGACTTCTTTGAGG
CGTTCAAGAACTACGATGAGAGCGGTTCACCGCGCAGAACCACTTGCCTA
AAGTACTTGGTGTTGGCCAACATGCTGATGAAATCGGGCATAAATCCCTT
TGACTCACAGGAAGCCAAACCGTATAAAAATGATCCGGAAATCCTTGCTA
TGACAAACCTGGTCAATTCCTATCAAAACAACGACATCAATGAGTTTGAA
ACCATCTTAAGGCAACATCGCAGCAATATCATGGCCGATCAGTTTATACG
TGAACACATCGAAGATTTGCTGCGTAACATTCGCACCCAGGTGCTTATAA
AACTTATCAGGCCCTATAAGAACATCGCTATACCCTTCATAGCCAATGCA
CTGAACATAGAGCCAGCCGAGGTGGAAAGCCTGCTGGTTTCCTGCATTCT
AGATGACACAATCAAGGGACGCATCGACCAGGTGAATCAGGTGCTGCAGC
TGGACAAGATCAACAGCAGTGCCTCGCGGTACAATGCCCTTGAAAAATGG
TCCAACCAAATCCAATCACTGCAGTTCGCTGTGGTCCAGAAAATGGCCTA
AAAGCTTTCTAGACCAT

BS16413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
alien-RD 1335 CG9556-PD 1..1335 17..1351 6435 98.8 Plus
alien-RE 1335 CG9556-PE 1..1335 17..1351 6435 98.8 Plus
alien-RB 1335 CG9556-PB 1..1335 17..1351 6435 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
alien-RD 3172 CG9556-RD 117..1451 17..1351 6435 98.8 Plus
alien-RE 1574 CG9556-RE 117..1451 17..1351 6435 98.8 Plus
alien-RB 2321 CG9556-RB 117..1451 17..1351 6435 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8996197..8996679 874..392 2340 99 Minus
2L 23513712 2L 8995804..8996136 1206..874 1620 99.1 Minus
2L 23513712 2L 8996931..8997126 265..70 935 98.5 Minus
2L 23513712 2L 8995602..8995746 1351..1207 680 97.9 Minus
2L 23513712 2L 8996743..8996869 391..265 605 98.4 Minus
2L 23513712 2L 8997209..8997263 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:48:24 has no hits.

BS16413.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:33 Download gff for BS16413.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 113..1445 17..1349 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:20 Download gff for BS16413.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 117..1449 17..1349 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:04 Download gff for BS16413.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 113..1445 17..1349 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:13 Download gff for BS16413.complete
Subject Subject Range Query Range Percent Splice Strand
alien-RB 117..1449 17..1349 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:13 Download gff for BS16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8995604..8995746 1207..1349 97 <- Minus
2L 8995804..8996136 874..1206 99 <- Minus
2L 8996198..8996679 392..873 98 <- Minus
2L 8996743..8996868 266..391 98 <- Minus
2L 8996931..8997125 71..265 98 <- Minus
2L 8997210..8997263 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:20 Download gff for BS16413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8996743..8996868 266..391 98 <- Minus
arm_2L 8996931..8997125 71..265 98 <- Minus
arm_2L 8997210..8997263 17..70 100   Minus
arm_2L 8995604..8995746 1207..1349 97 <- Minus
arm_2L 8995804..8996136 874..1206 99 <- Minus
arm_2L 8996198..8996679 392..873 98 <- Minus

BS16413.3prime Sequence

870 bp (849 high quality bases) assembled on 2007-05-15

> BS16413.3prime
ATGGTCTAGAAAGCTTTTACGCCATTTTCTGGACCACAGCGAACTGCAGT
GATTGGATTTGGTTGGACCATTTTTCAAGGGCATTGTACCGCGAGGCACT
GCTGTTGATCTTGTCCAGCTGCAGCACCTGATTCACCTGGTCGATGCGTC
CCTTGATTGTGTCATCTAGAATGCAGGAAACCAGCAGGCTTTCCACCTCG
GCTGGCTCTATGTTCAGTGCATTGGCTATGAAGGGTATAGCGATGTTCTT
ATAGGGCCTGATAAGTTTTATAAGCACCTGGGTGCGAATGTTACGCAGCA
AATCTTCGATGTGTTCACGTATAAACTGATCGGCCATGATATTGCTGCGA
TGTTGCCTTAAGATGGTTTCAAACTCATTGATGTCGTTGTTTTGATAGGA
ATTGACCAGGTTTGTCATAGCAAGGATTTCCGGATCATTTTTATACGGTT
TGGCTTCCTGTGAGTCAAAGGGATTTATGCCCGATTTCATCAGCATGTTG
GCCAACACCAAGTACTTTAGGCAAGTGGTTCTGCGCGGTGAACCGCTCTC
ATCGTAGTTCTTGAACGCCTCAAAGAAGTCCGTGTGTGCCTTTTCGAACT
CGCCTTCTCGTAGATGCATTTTACCGCCGCACTCACGGATCACACCCATG
ATTAGGGGATGGGGAATGGCCGACTTGATGTGGAGTGACTGTTCATAGAG
GGCCTTAAGTTTTTTGTTGTTCTTCTGCACCGTATACATCTGAATCTCCA
GGGCATAGATTTCCAGGAGCTGAGTGCCCTTCTTCAGATCGTCCTCGCCA
TCGTCCGTCTGACAGCTTTGATGCAGTTGCTTTAGTATCTTCTGCAGCTT
GNTAAAGTCACTGCGGTCAA

BS16413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9556-PA 1335 alien-RA 484..1331 868..21 3946 98.5 Minus
CG9556-PB 1335 alien-RB 484..1331 868..21 3946 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
alien-RD 3172 CG9556-RD 600..1451 868..17 4069 98.5 Minus
alien-RE 1574 CG9556-RE 600..1451 868..17 4069 98.5 Minus
alien-RB 2321 CG9556-RB 600..1451 868..17 4069 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8996197..8996571 494..868 1789 98.4 Plus
2L 23513712 2L 8995804..8996136 162..494 1620 99.1 Plus
2L 23513712 2L 8995602..8995746 17..161 665 97.2 Plus
Blast to na_te.dros performed on 2015-02-10 15:59:27 has no hits.

BS16413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:07 Download gff for BS16413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9556-PB 484..1335 17..868 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:29 Download gff for BS16413.3prime
Subject Subject Range Query Range Percent Splice Strand
alien-RB 600..1451 17..868 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:39 Download gff for BS16413.3prime
Subject Subject Range Query Range Percent Splice Strand
alien-RB 600..1451 17..868 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:39 Download gff for BS16413.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8995602..8995746 17..161 97 <- Plus
2L 8995804..8996136 162..494 99 <- Plus
2L 8996198..8996571 495..868 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:29 Download gff for BS16413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8995602..8995746 17..161 97 <- Plus
arm_2L 8995804..8996136 162..494 99 <- Plus
arm_2L 8996198..8996571 495..868 98   Plus

BS16413.5prime Sequence

760 bp (759 high quality bases) assembled on 2007-05-15

> BS16413.5prime
GAAGTTATCAGTCGACATGTCCGACAACGATGATGATTTTATGTGCGACG
ATGATGAGGACTATGGATTGGAATATTCCGAAGATAGCAACTCGGAACCG
GATGTGGATTTGGAGAATCAGTACTACAACAGCAAGGCTCTGAAGGAGGA
GGAGCCCAAAGCGGCGCTGGCCAGTTTCCAAAAGGTGCTCGACCTGGAAA
ATGGCGAAAAAGGAGAGTGGGGCTTCAAGGCGCTGAAGCAGATGATCAAG
ATCAACTTTAGGCTGTGCAACTATGATGAAATGATGGTGCGCTATAAGCA
GCTACTCACCTACATCAAGAGTGCCGTCACCAGGAACCATTCGGAAAAGA
GCATCAATTCGATCCTGGACTACATATCCACATCGAAGAATATGGCACTG
CTCCAAAACTTTTACGAGACCACTCTGGATGCTTTGCGGGATGCGAAAAA
CGATCGGCTGTGGTTTAAGACCAACACCAAGCTGGGCAAACTCTACTTCG
ACCGCAGTGACTTTACCAAGCTGCAGAAGATACTAAAGCAACTGCATCAA
AGCTGTCAGACGGACGATGGCGAGGACGATCTGAAGAAGGGCACTCAGCT
CCTGGAAATCTATGCCCTGGAGATTCAGATGTATACGGTGCAGAAGAACA
ACAAAAAACTTAAGGCCCTCTATGAACAGTCACTCCACATCAAGTCGGCC
ATTCCCCATCCCCTAATCATGGGTGTGATCCGTGAGTGCGGCGGTAAAAT
GCATCTACGA

BS16413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9556-PA 1335 alien-RA 1..744 17..760 3495 98.7 Plus
CG9556-PB 1335 alien-RB 1..744 17..760 3495 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
alien-RD 3172 CG9556-RD 117..860 17..760 3585 98.8 Plus
alien-RE 1574 CG9556-RE 117..860 17..760 3585 98.8 Plus
alien-RB 2321 CG9556-RB 117..860 17..760 3585 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8996311..8996679 760..392 1785 98.9 Minus
2L 23513712 2L 8996931..8997126 265..70 935 98.5 Minus
2L 23513712 2L 8996743..8996869 391..265 605 98.4 Minus
2L 23513712 2L 8997209..8997263 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:29:54 has no hits.

BS16413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:41 Download gff for BS16413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9556-PB 1..743 17..759 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:13 Download gff for BS16413.5prime
Subject Subject Range Query Range Percent Splice Strand
alien-RB 112..859 11..759 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:01:28 Download gff for BS16413.5prime
Subject Subject Range Query Range Percent Splice Strand
alien-RB 112..859 11..759 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:01:28 Download gff for BS16413.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8996312..8996679 392..759 98 <- Minus
2L 8996743..8996868 266..391 98 <- Minus
2L 8996931..8997125 71..265 98 <- Minus
2L 8997210..8997268 11..70 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:13 Download gff for BS16413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8996312..8996679 392..759 98 <- Minus
arm_2L 8996743..8996868 266..391 98 <- Minus
arm_2L 8996931..8997125 71..265 98 <- Minus
arm_2L 8997210..8997268 11..70 95   Minus

BS16413.pep Sequence

Translation from 16 to 1350

> BS16413.pep
MSDNDDDFMCDDDEDYGLEYSEDSNSEPDVDLENQYYNSKALKEEEPKAA
LASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTYI
KSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDALRDAKNDRLWF
KTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA
LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREG
EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA
KPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIED
LLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIK
GRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA*

BS16413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
alien-PD 444 CG9556-PD 1..444 1..444 2293 100 Plus
alien-PE 444 CG9556-PE 1..444 1..444 2293 100 Plus
alien-PB 444 CG9556-PB 1..444 1..444 2293 100 Plus
alien-PA 444 CG9556-PA 1..444 1..444 2293 100 Plus
Rpn6-PC 422 CG10149-PC 15..385 41..410 233 22.3 Plus