Clone Sequence Records
BS16413.complete Sequence
1367 bp assembled on 2009-12-08
GenBank Submission: KX803881
> BS16413.complete
GAAGTTATCAGTCGACATGTCCGACAACGATGATGATTTTATGTGCGACG
ATGATGAGGACTATGGATTGGAATATTCCGAAGATAGCAACTCGGAACCG
GATGTGGATTTGGAGAATCAGTACTACAACAGCAAGGCTCTGAAGGAGGA
GGAGCCCAAAGCGGCGCTGGCCAGTTTCCAAAAGGTGCTCGACCTGGAAA
ATGGCGAAAAAGGAGAGTGGGGCTTCAAGGCGCTGAAGCAGATGATCAAG
ATCAACTTTAGGCTGTGCAACTATGATGAAATGATGGTGCGCTATAAGCA
GCTACTCACCTACATCAAGAGTGCCGTCACCAGGAACCATTCGGAAAAGA
GCATCAATTCGATCCTGGACTACATATCCACATCGAAGAATATGGCACTG
CTCCAAAACTTTTACGAGACCACTCTGGATGCTTTGCGGGATGCGAAAAA
CGATCGGCTGTGGTTTAAGACCAACACCAAGCTGGGCAAACTCTACTTCG
ACCGCAGTGACTTTACCAAGCTGCAGAAGATACTAAAGCAACTGCATCAA
AGCTGTCAGACGGACGATGGCGAGGACGATCTGAAGAAGGGCACTCAGCT
CCTGGAAATCTATGCCCTGGAGATTCAGATGTATACGGTGCAGAAGAACA
ACAAAAAACTTAAGGCCCTCTATGAACAGTCACTCCACATCAAGTCGGCC
ATTCCCCATCCCCTAATCATGGGTGTGATCCGTGAGTGCGGCGGTAAAAT
GCATCTACGAGAAGGCGAGTTCGAAAAGGCACACACGGACTTCTTTGAGG
CGTTCAAGAACTACGATGAGAGCGGTTCACCGCGCAGAACCACTTGCCTA
AAGTACTTGGTGTTGGCCAACATGCTGATGAAATCGGGCATAAATCCCTT
TGACTCACAGGAAGCCAAACCGTATAAAAATGATCCGGAAATCCTTGCTA
TGACAAACCTGGTCAATTCCTATCAAAACAACGACATCAATGAGTTTGAA
ACCATCTTAAGGCAACATCGCAGCAATATCATGGCCGATCAGTTTATACG
TGAACACATCGAAGATTTGCTGCGTAACATTCGCACCCAGGTGCTTATAA
AACTTATCAGGCCCTATAAGAACATCGCTATACCCTTCATAGCCAATGCA
CTGAACATAGAGCCAGCCGAGGTGGAAAGCCTGCTGGTTTCCTGCATTCT
AGATGACACAATCAAGGGACGCATCGACCAGGTGAATCAGGTGCTGCAGC
TGGACAAGATCAACAGCAGTGCCTCGCGGTACAATGCCCTTGAAAAATGG
TCCAACCAAATCCAATCACTGCAGTTCGCTGTGGTCCAGAAAATGGCCTA
AAAGCTTTCTAGACCAT
BS16413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alien-RD | 1335 | CG9556-PD | 1..1335 | 17..1351 | 6435 | 98.8 | Plus |
alien-RE | 1335 | CG9556-PE | 1..1335 | 17..1351 | 6435 | 98.8 | Plus |
alien-RB | 1335 | CG9556-PB | 1..1335 | 17..1351 | 6435 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alien-RD | 3172 | CG9556-RD | 117..1451 | 17..1351 | 6435 | 98.8 | Plus |
alien-RE | 1574 | CG9556-RE | 117..1451 | 17..1351 | 6435 | 98.8 | Plus |
alien-RB | 2321 | CG9556-RB | 117..1451 | 17..1351 | 6435 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8996197..8996679 | 874..392 | 2340 | 99 | Minus |
2L | 23513712 | 2L | 8995804..8996136 | 1206..874 | 1620 | 99.1 | Minus |
2L | 23513712 | 2L | 8996931..8997126 | 265..70 | 935 | 98.5 | Minus |
2L | 23513712 | 2L | 8995602..8995746 | 1351..1207 | 680 | 97.9 | Minus |
2L | 23513712 | 2L | 8996743..8996869 | 391..265 | 605 | 98.4 | Minus |
2L | 23513712 | 2L | 8997209..8997263 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:48:24 has no hits.
BS16413.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:33 Download gff for
BS16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alien-RB | 113..1445 | 17..1349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:20 Download gff for
BS16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alien-RB | 117..1449 | 17..1349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:04 Download gff for
BS16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alien-RB | 113..1445 | 17..1349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:13 Download gff for
BS16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alien-RB | 117..1449 | 17..1349 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:13 Download gff for
BS16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8995604..8995746 | 1207..1349 | 97 | <- | Minus |
2L | 8995804..8996136 | 874..1206 | 99 | <- | Minus |
2L | 8996198..8996679 | 392..873 | 98 | <- | Minus |
2L | 8996743..8996868 | 266..391 | 98 | <- | Minus |
2L | 8996931..8997125 | 71..265 | 98 | <- | Minus |
2L | 8997210..8997263 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:20 Download gff for
BS16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8996743..8996868 | 266..391 | 98 | <- | Minus |
arm_2L | 8996931..8997125 | 71..265 | 98 | <- | Minus |
arm_2L | 8997210..8997263 | 17..70 | 100 | | Minus |
arm_2L | 8995604..8995746 | 1207..1349 | 97 | <- | Minus |
arm_2L | 8995804..8996136 | 874..1206 | 99 | <- | Minus |
arm_2L | 8996198..8996679 | 392..873 | 98 | <- | Minus |
BS16413.3prime Sequence
870 bp (849 high quality bases) assembled on 2007-05-15
> BS16413.3prime
ATGGTCTAGAAAGCTTTTACGCCATTTTCTGGACCACAGCGAACTGCAGT
GATTGGATTTGGTTGGACCATTTTTCAAGGGCATTGTACCGCGAGGCACT
GCTGTTGATCTTGTCCAGCTGCAGCACCTGATTCACCTGGTCGATGCGTC
CCTTGATTGTGTCATCTAGAATGCAGGAAACCAGCAGGCTTTCCACCTCG
GCTGGCTCTATGTTCAGTGCATTGGCTATGAAGGGTATAGCGATGTTCTT
ATAGGGCCTGATAAGTTTTATAAGCACCTGGGTGCGAATGTTACGCAGCA
AATCTTCGATGTGTTCACGTATAAACTGATCGGCCATGATATTGCTGCGA
TGTTGCCTTAAGATGGTTTCAAACTCATTGATGTCGTTGTTTTGATAGGA
ATTGACCAGGTTTGTCATAGCAAGGATTTCCGGATCATTTTTATACGGTT
TGGCTTCCTGTGAGTCAAAGGGATTTATGCCCGATTTCATCAGCATGTTG
GCCAACACCAAGTACTTTAGGCAAGTGGTTCTGCGCGGTGAACCGCTCTC
ATCGTAGTTCTTGAACGCCTCAAAGAAGTCCGTGTGTGCCTTTTCGAACT
CGCCTTCTCGTAGATGCATTTTACCGCCGCACTCACGGATCACACCCATG
ATTAGGGGATGGGGAATGGCCGACTTGATGTGGAGTGACTGTTCATAGAG
GGCCTTAAGTTTTTTGTTGTTCTTCTGCACCGTATACATCTGAATCTCCA
GGGCATAGATTTCCAGGAGCTGAGTGCCCTTCTTCAGATCGTCCTCGCCA
TCGTCCGTCTGACAGCTTTGATGCAGTTGCTTTAGTATCTTCTGCAGCTT
GNTAAAGTCACTGCGGTCAA
BS16413.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9556-PA | 1335 | alien-RA | 484..1331 | 868..21 | 3946 | 98.5 | Minus |
CG9556-PB | 1335 | alien-RB | 484..1331 | 868..21 | 3946 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alien-RD | 3172 | CG9556-RD | 600..1451 | 868..17 | 4069 | 98.5 | Minus |
alien-RE | 1574 | CG9556-RE | 600..1451 | 868..17 | 4069 | 98.5 | Minus |
alien-RB | 2321 | CG9556-RB | 600..1451 | 868..17 | 4069 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8996197..8996571 | 494..868 | 1789 | 98.4 | Plus |
2L | 23513712 | 2L | 8995804..8996136 | 162..494 | 1620 | 99.1 | Plus |
2L | 23513712 | 2L | 8995602..8995746 | 17..161 | 665 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:59:27 has no hits.
BS16413.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:07 Download gff for
BS16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9556-PB | 484..1335 | 17..868 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:29 Download gff for
BS16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alien-RB | 600..1451 | 17..868 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:39 Download gff for
BS16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alien-RB | 600..1451 | 17..868 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:39 Download gff for
BS16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8995602..8995746 | 17..161 | 97 | <- | Plus |
2L | 8995804..8996136 | 162..494 | 99 | <- | Plus |
2L | 8996198..8996571 | 495..868 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:29 Download gff for
BS16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8995602..8995746 | 17..161 | 97 | <- | Plus |
arm_2L | 8995804..8996136 | 162..494 | 99 | <- | Plus |
arm_2L | 8996198..8996571 | 495..868 | 98 | | Plus |
BS16413.5prime Sequence
760 bp (759 high quality bases) assembled on 2007-05-15
> BS16413.5prime
GAAGTTATCAGTCGACATGTCCGACAACGATGATGATTTTATGTGCGACG
ATGATGAGGACTATGGATTGGAATATTCCGAAGATAGCAACTCGGAACCG
GATGTGGATTTGGAGAATCAGTACTACAACAGCAAGGCTCTGAAGGAGGA
GGAGCCCAAAGCGGCGCTGGCCAGTTTCCAAAAGGTGCTCGACCTGGAAA
ATGGCGAAAAAGGAGAGTGGGGCTTCAAGGCGCTGAAGCAGATGATCAAG
ATCAACTTTAGGCTGTGCAACTATGATGAAATGATGGTGCGCTATAAGCA
GCTACTCACCTACATCAAGAGTGCCGTCACCAGGAACCATTCGGAAAAGA
GCATCAATTCGATCCTGGACTACATATCCACATCGAAGAATATGGCACTG
CTCCAAAACTTTTACGAGACCACTCTGGATGCTTTGCGGGATGCGAAAAA
CGATCGGCTGTGGTTTAAGACCAACACCAAGCTGGGCAAACTCTACTTCG
ACCGCAGTGACTTTACCAAGCTGCAGAAGATACTAAAGCAACTGCATCAA
AGCTGTCAGACGGACGATGGCGAGGACGATCTGAAGAAGGGCACTCAGCT
CCTGGAAATCTATGCCCTGGAGATTCAGATGTATACGGTGCAGAAGAACA
ACAAAAAACTTAAGGCCCTCTATGAACAGTCACTCCACATCAAGTCGGCC
ATTCCCCATCCCCTAATCATGGGTGTGATCCGTGAGTGCGGCGGTAAAAT
GCATCTACGA
BS16413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9556-PA | 1335 | alien-RA | 1..744 | 17..760 | 3495 | 98.7 | Plus |
CG9556-PB | 1335 | alien-RB | 1..744 | 17..760 | 3495 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alien-RD | 3172 | CG9556-RD | 117..860 | 17..760 | 3585 | 98.8 | Plus |
alien-RE | 1574 | CG9556-RE | 117..860 | 17..760 | 3585 | 98.8 | Plus |
alien-RB | 2321 | CG9556-RB | 117..860 | 17..760 | 3585 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8996311..8996679 | 760..392 | 1785 | 98.9 | Minus |
2L | 23513712 | 2L | 8996931..8997126 | 265..70 | 935 | 98.5 | Minus |
2L | 23513712 | 2L | 8996743..8996869 | 391..265 | 605 | 98.4 | Minus |
2L | 23513712 | 2L | 8997209..8997263 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:29:54 has no hits.
BS16413.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:41 Download gff for
BS16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9556-PB | 1..743 | 17..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:13 Download gff for
BS16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alien-RB | 112..859 | 11..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:01:28 Download gff for
BS16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alien-RB | 112..859 | 11..759 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:01:28 Download gff for
BS16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8996312..8996679 | 392..759 | 98 | <- | Minus |
2L | 8996743..8996868 | 266..391 | 98 | <- | Minus |
2L | 8996931..8997125 | 71..265 | 98 | <- | Minus |
2L | 8997210..8997268 | 11..70 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:13 Download gff for
BS16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8996312..8996679 | 392..759 | 98 | <- | Minus |
arm_2L | 8996743..8996868 | 266..391 | 98 | <- | Minus |
arm_2L | 8996931..8997125 | 71..265 | 98 | <- | Minus |
arm_2L | 8997210..8997268 | 11..70 | 95 | | Minus |
BS16413.pep Sequence
Translation from 16 to 1350
> BS16413.pep
MSDNDDDFMCDDDEDYGLEYSEDSNSEPDVDLENQYYNSKALKEEEPKAA
LASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTYI
KSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDALRDAKNDRLWF
KTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA
LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREG
EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA
KPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIED
LLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIK
GRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSLQFAVVQKMA*
BS16413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alien-PD | 444 | CG9556-PD | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PE | 444 | CG9556-PE | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PB | 444 | CG9556-PB | 1..444 | 1..444 | 2293 | 100 | Plus |
alien-PA | 444 | CG9556-PA | 1..444 | 1..444 | 2293 | 100 | Plus |
Rpn6-PC | 422 | CG10149-PC | 15..385 | 41..410 | 233 | 22.3 | Plus |