Clone BS16414 Report

Search the DGRC for BS16414

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptIdgf5-RA
Protein status:BS16414.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16414.3prime Sequence

827 bp (788 high quality bases) assembled on 2007-05-15

> BS16414.3prime
ATGGTCTAGAAAGCTTTTATAGCTTAAACTTGATGCTTCGCAGAATGGGA
AATTTTTCGCCAGCACACTGACCACGAAAATCATCCATGGACAGGTCGTG
GAAGGCCACTCCGCCCAATCCTTGGGCATGCACAAATCCGGCCTTAATGG
CCGCCGTCAAGGGATCCTCGTAGCCCACCCATAGGCCATTCTCCCCTTGA
TCATCCGCTGCCCGGTACGCATAGATGCCAAAACGCTTGGTGGGATCGCC
CACTTTGCGCAGATGGGGAACCTCGCGATCCTGTGGTTGCTGCTGCAGCA
AATCACAAATCTCCGGCCAGCTAAGCAATCCTGGCGTAACAGTTTGCCTT
CCCGGCGGTGCAGCTCCATTTGCCGCCGGAATTGGTGGATAGCCGGTGAT
GCCGGAGTTTCGGGTCATATTCCAAGCTCGACCATAACTGGTCACTCCCA
CGTGCAGTTTGTGGACACTGATTTCGGATGTCTGGTTCATCCAATACTGC
ACCTGGTACTGCACATTGTGACTGGGATCCCGATCGTACATGGCATACAA
TGGCGTGGGCAGATCTGCAACTTTGGGATCGCGTTCCGGCGTTTGGAAGT
CATAGGTGCCCAGGTTGACGAAGTCCACGTTACTTAGAACCTTTGGAACA
TCAATAAAGAGTTCCGCTGAAACATGTGGCAACATACTGACGGTTAGCAG
TTGGCCACCGCGTCGCAAATCGGATTGCAGCTCTTCGAGAAGTGTGGCAA
ACTGCTCACGATGCTCCTCGGACTTCTCGTCCACCGATGAGGAACTAAAC
CAGCCACGTAACGATCCCCATACCCTC

BS16414.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5154-PA 1335 Idgf5-RA 525..1335 827..17 4055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-RA 1495 CG5154-RA 567..1379 827..15 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18394521..18395166 660..15 3230 100 Minus
2R 25286936 2R 18394288..18394454 827..661 835 100 Minus
X 23542271 X 9928535..9928656 141..262 190 77 Plus
Blast to na_te.dros performed on 2015-02-13 11:57:16 has no hits.

BS16414.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:17 Download gff for BS16414.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5154-PA 525..1335 17..827 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:33 Download gff for BS16414.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 567..1379 15..827 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:51 Download gff for BS16414.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 567..1379 15..827 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:51 Download gff for BS16414.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18394288..18394454 661..827 100 -> Minus
2R 18394521..18395166 15..660 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:33 Download gff for BS16414.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14281793..14281959 661..827 100 -> Minus
arm_2R 14282026..14282671 15..660 100   Minus

BS16414.5prime Sequence

847 bp (753 high quality bases) assembled on 2007-05-15

> BS16414.5prime
GAAGTTATCAGTCGACATGATGTGGATTCAAAAGAACCCATTTTTAGGGT
TATTGCTCTGCAGTTTTTTGGCATTTTTCCAGAGTACATATGCAGAGGTT
GGAAAACTGGTGTGCTTCTACGATGCGCAGAGTTTTGTGCGTGAAGGCCC
CGCCCAAATGTCGCTGGCTGAACTGGAGCCCGCTCTACAGTTTTGCAACT
TTCTGGTCTACGGCTATGCGGGCATTGATGCCGTAACCTATAAGATCAAG
AGTTTGGATCCTTCGTTGACCAATGATCGTCAGCATTATCGACACATTAC
CGCTCTGCGCAAAAAATATCCGCATGTTCGCTTCCTGCTTTCGGTGGGCG
GCGATCGGGATGTGAACAGCGAGGGCGTGGCAGATAGTGACAAGTATCTA
AGATTACTGGAACAGTCGGAGCATCGGAAAAGCTTTCAGGCAAGCGTTTT
GGCGGAACTGAACAACAACGGCTTCGATGGCATCGATCTCGCCTGGCAGT
TTCCCAAAAATAGGCCCAAACTGCAGCAGGGCGTGTTTAAGAGGGTATGG
GGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCCGA
GGAGCATCGTGAGCAGTTTGCCACACTTCTCGAAGAGCTGCAATCCGATT
TGCGACGCGGTGGCCAACTGCTAACCGTCAGTATGTTGCCACATGTTTCA
GCGGAACTCTTTATTGATGTTCCAAAGGTTCTAAGTAACGTGGACTTCGT
CAACCTGCGCACCTATGACTTCCAAACGCCGGAACGCGATCCCAAAGTTG
CAGATCTGCCCACGCCATTGTATGCCATGTACGATCGGGATCCCAGT

BS16414.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5154-PA 1335 Idgf5-RA 1..831 17..847 4130 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-RA 1495 CG5154-RA 42..873 16..847 4145 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18393892..18394454 145..707 2815 100 Plus
2R 25286936 2R 18394521..18394660 708..847 685 99.3 Plus
2R 25286936 2R 18393707..18393838 16..147 660 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:16:52 has no hits.

BS16414.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:05 Download gff for BS16414.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5154-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:57 Download gff for BS16414.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 35..873 6..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:08 Download gff for BS16414.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 35..873 6..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:08 Download gff for BS16414.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18393700..18393837 6..146 97 -> Plus
2R 18393894..18394454 147..707 100 -> Plus
2R 18394521..18394660 708..847 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:57 Download gff for BS16414.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14281205..14281342 6..146 97 -> Plus
arm_2R 14281399..14281959 147..707 100 -> Plus
arm_2R 14282026..14282165 708..847 99   Plus

BS16414.complete Sequence

1367 bp assembled on 2007-05-07

GenBank Submission: FJ638877

> BS16414.complete
GAAGTTATCAGTCGACATGATGTGGATTCAAAAGAACCCATTTTTAGGGT
TATTGCTCTGCAGTTTTTTGGCATTTTTCCAGAGTACATATGCAGAGGTT
GGAAAACTGGTGTGCTTCTACGATGCGCAGAGTTTTGTGCGTGAAGGCCC
CGCCCAAATGTCGCTGGCTGAACTGGAGCCCGCTCTACAGTTTTGCAACT
TTCTGGTCTACGGCTATGCGGGCATTGATGCCGTAACCTATAAGATCAAG
AGTTTGGATCCTTCGTTGACCAATGATCGTCAGCATTATCGACACATTAC
CGCTCTGCGCAAAAAATATCCGCATGTTCGCTTCCTGCTTTCGGTGGGCG
GCGATCGGGATGTGAACAGCGAGGGCGTGGCAGATAGTGACAAGTATCTA
AGATTACTGGAACAGTCGGAGCATCGGAAAAGCTTTCAGGCAAGCGTTTT
GGCGGAACTGAACAACAACGGCTTCGATGGCATCGATCTCGCCTGGCAGT
TTCCCAAAAATAGGCCCAAACTGCAGCAGGGCGTGTTTAAGAGGGTATGG
GGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCCGA
GGAGCATCGTGAGCAGTTTGCCACACTTCTCGAAGAGCTGCAATCCGATT
TGCGACGCGGTGGCCAACTGCTAACCGTCAGTATGTTGCCACATGTTTCA
GCGGAACTCTTTATTGATGTTCCAAAGGTTCTAAGTAACGTGGACTTCGT
CAACCTGGGCACCTATGACTTCCAAACGCCGGAACGCGATCCCAAAGTTG
CAGATCTGCCCACGCCATTGTATGCCATGTACGATCGGGATCCCAGTCAC
AATGTGCAGTACCAGGTGCAGTATTGGATGAACCAGACATCCGAAATCAG
TGTCCACAAACTGCACGTGGGAGTGACCAGTTATGGTCGAGCTTGGAATA
TGACCCGAAACTCCGGCATCACCGGCTATCCACCAATTCCGGCGGCAAAT
GGAGCTGCACCGCCGGGAAGGCAAACTGTTACGCCAGGATTGCTTAGCTG
GCCGGAGATTTGTGATTTGCTGCAGCAGCAACCACAGGATCGCGAGGTTC
CCCATCTGCGCAAAGTGGGCGATCCCACCAAGCGTTTTGGCATCTATGCG
TACCGGGCAGCGGATGATCAAGGGGAGAATGGCCTATGGGTGGGCTACGA
GGATCCCTTGACGGCGGCCATTAAGGCCGGATTTGTGCATGCCCAAGGAT
TGGGCGGAGTGGCCTTCCACGACCTGTCCATGGATGATTTTCGTGGTCAG
TGTGCTGGCGAAAAATTTCCCATTCTGCGAAGCATCAAGTTTAAGCTATA
AAAGCTTTCTAGACCAT

BS16414.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-RA 1335 CG5154-PA 1..1335 17..1351 6675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-RA 1495 CG5154-RA 42..1379 16..1353 6690 100 Plus
Idgf4-RC 1807 CG1780-RC 1124..1245 1106..1227 190 77 Plus
Idgf4-RB 1541 CG1780-RB 1151..1272 1106..1227 190 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18394521..18395166 708..1353 3230 100 Plus
2R 25286936 2R 18393892..18394454 145..707 2815 100 Plus
2R 25286936 2R 18393707..18393838 16..147 660 100 Plus
X 23542271 X 9928535..9928656 1227..1106 190 77 Minus
Blast to na_te.dros performed on 2014-11-27 20:05:23 has no hits.

BS16414.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:14 Download gff for BS16414.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 1..1335 17..1351 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:29 Download gff for BS16414.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 39..1383 6..1353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:41 Download gff for BS16414.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 43..1375 17..1349 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:14 Download gff for BS16414.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 39..1383 6..1353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:33 Download gff for BS16414.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 43..1375 17..1349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:33 Download gff for BS16414.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18393708..18393837 17..146 100 -> Plus
2R 18393894..18394454 147..707 100 -> Plus
2R 18394521..18395162 708..1349 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:41 Download gff for BS16414.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14281213..14281342 17..146 100 -> Plus
arm_2R 14281399..14281959 147..707 100 -> Plus
arm_2R 14282026..14282667 708..1349 100   Plus

BS16414.pep Sequence

Translation from 16 to 1350

> BS16414.pep
MMWIQKNPFLGLLLCSFLAFFQSTYAEVGKLVCFYDAQSFVREGPAQMSL
AELEPALQFCNFLVYGYAGIDAVTYKIKSLDPSLTNDRQHYRHITALRKK
YPHVRFLLSVGGDRDVNSEGVADSDKYLRLLEQSEHRKSFQASVLAELNN
NGFDGIDLAWQFPKNRPKLQQGVFKRVWGSLRGWFSSSSVDEKSEEHREQ
FATLLEELQSDLRRGGQLLTVSMLPHVSAELFIDVPKVLSNVDFVNLGTY
DFQTPERDPKVADLPTPLYAMYDRDPSHNVQYQVQYWMNQTSEISVHKLH
VGVTSYGRAWNMTRNSGITGYPPIPAANGAAPPGRQTVTPGLLSWPEICD
LLQQQPQDREVPHLRKVGDPTKRFGIYAYRAADDQGENGLWVGYEDPLTA
AIKAGFVHAQGLGGVAFHDLSMDDFRGQCAGEKFPILRSIKFKL*

BS16414.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-PA 444 CG5154-PA 1..444 1..444 2361 100 Plus
Idgf4-PC 442 CG1780-PC 9..442 13..444 1123 51.4 Plus
Idgf4-PB 442 CG1780-PB 9..442 13..444 1123 51.4 Plus
Idgf4-PA 442 CG1780-PA 9..442 13..444 1123 51.4 Plus
CG5210-PB 452 CG5210-PB 31..450 31..444 1061 49.9 Plus