Clone Sequence Records
BS16414.3prime Sequence
827 bp (788 high quality bases) assembled on 2007-05-15
> BS16414.3prime
ATGGTCTAGAAAGCTTTTATAGCTTAAACTTGATGCTTCGCAGAATGGGA
AATTTTTCGCCAGCACACTGACCACGAAAATCATCCATGGACAGGTCGTG
GAAGGCCACTCCGCCCAATCCTTGGGCATGCACAAATCCGGCCTTAATGG
CCGCCGTCAAGGGATCCTCGTAGCCCACCCATAGGCCATTCTCCCCTTGA
TCATCCGCTGCCCGGTACGCATAGATGCCAAAACGCTTGGTGGGATCGCC
CACTTTGCGCAGATGGGGAACCTCGCGATCCTGTGGTTGCTGCTGCAGCA
AATCACAAATCTCCGGCCAGCTAAGCAATCCTGGCGTAACAGTTTGCCTT
CCCGGCGGTGCAGCTCCATTTGCCGCCGGAATTGGTGGATAGCCGGTGAT
GCCGGAGTTTCGGGTCATATTCCAAGCTCGACCATAACTGGTCACTCCCA
CGTGCAGTTTGTGGACACTGATTTCGGATGTCTGGTTCATCCAATACTGC
ACCTGGTACTGCACATTGTGACTGGGATCCCGATCGTACATGGCATACAA
TGGCGTGGGCAGATCTGCAACTTTGGGATCGCGTTCCGGCGTTTGGAAGT
CATAGGTGCCCAGGTTGACGAAGTCCACGTTACTTAGAACCTTTGGAACA
TCAATAAAGAGTTCCGCTGAAACATGTGGCAACATACTGACGGTTAGCAG
TTGGCCACCGCGTCGCAAATCGGATTGCAGCTCTTCGAGAAGTGTGGCAA
ACTGCTCACGATGCTCCTCGGACTTCTCGTCCACCGATGAGGAACTAAAC
CAGCCACGTAACGATCCCCATACCCTC
BS16414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5154-PA | 1335 | Idgf5-RA | 525..1335 | 827..17 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-RA | 1495 | CG5154-RA | 567..1379 | 827..15 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18394521..18395166 | 660..15 | 3230 | 100 | Minus |
2R | 25286936 | 2R | 18394288..18394454 | 827..661 | 835 | 100 | Minus |
X | 23542271 | X | 9928535..9928656 | 141..262 | 190 | 77 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:57:16 has no hits.
BS16414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:17 Download gff for
BS16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5154-PA | 525..1335 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:33 Download gff for
BS16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 567..1379 | 15..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:51 Download gff for
BS16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 567..1379 | 15..827 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:51 Download gff for
BS16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18394288..18394454 | 661..827 | 100 | -> | Minus |
2R | 18394521..18395166 | 15..660 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:33 Download gff for
BS16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14281793..14281959 | 661..827 | 100 | -> | Minus |
arm_2R | 14282026..14282671 | 15..660 | 100 | | Minus |
BS16414.5prime Sequence
847 bp (753 high quality bases) assembled on 2007-05-15
> BS16414.5prime
GAAGTTATCAGTCGACATGATGTGGATTCAAAAGAACCCATTTTTAGGGT
TATTGCTCTGCAGTTTTTTGGCATTTTTCCAGAGTACATATGCAGAGGTT
GGAAAACTGGTGTGCTTCTACGATGCGCAGAGTTTTGTGCGTGAAGGCCC
CGCCCAAATGTCGCTGGCTGAACTGGAGCCCGCTCTACAGTTTTGCAACT
TTCTGGTCTACGGCTATGCGGGCATTGATGCCGTAACCTATAAGATCAAG
AGTTTGGATCCTTCGTTGACCAATGATCGTCAGCATTATCGACACATTAC
CGCTCTGCGCAAAAAATATCCGCATGTTCGCTTCCTGCTTTCGGTGGGCG
GCGATCGGGATGTGAACAGCGAGGGCGTGGCAGATAGTGACAAGTATCTA
AGATTACTGGAACAGTCGGAGCATCGGAAAAGCTTTCAGGCAAGCGTTTT
GGCGGAACTGAACAACAACGGCTTCGATGGCATCGATCTCGCCTGGCAGT
TTCCCAAAAATAGGCCCAAACTGCAGCAGGGCGTGTTTAAGAGGGTATGG
GGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCCGA
GGAGCATCGTGAGCAGTTTGCCACACTTCTCGAAGAGCTGCAATCCGATT
TGCGACGCGGTGGCCAACTGCTAACCGTCAGTATGTTGCCACATGTTTCA
GCGGAACTCTTTATTGATGTTCCAAAGGTTCTAAGTAACGTGGACTTCGT
CAACCTGCGCACCTATGACTTCCAAACGCCGGAACGCGATCCCAAAGTTG
CAGATCTGCCCACGCCATTGTATGCCATGTACGATCGGGATCCCAGT
BS16414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5154-PA | 1335 | Idgf5-RA | 1..831 | 17..847 | 4130 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-RA | 1495 | CG5154-RA | 42..873 | 16..847 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18393892..18394454 | 145..707 | 2815 | 100 | Plus |
2R | 25286936 | 2R | 18394521..18394660 | 708..847 | 685 | 99.3 | Plus |
2R | 25286936 | 2R | 18393707..18393838 | 16..147 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:16:52 has no hits.
BS16414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:05 Download gff for
BS16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5154-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:57 Download gff for
BS16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 35..873 | 6..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:08 Download gff for
BS16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 35..873 | 6..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:08 Download gff for
BS16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18393700..18393837 | 6..146 | 97 | -> | Plus |
2R | 18393894..18394454 | 147..707 | 100 | -> | Plus |
2R | 18394521..18394660 | 708..847 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:57 Download gff for
BS16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14281205..14281342 | 6..146 | 97 | -> | Plus |
arm_2R | 14281399..14281959 | 147..707 | 100 | -> | Plus |
arm_2R | 14282026..14282165 | 708..847 | 99 | | Plus |
BS16414.complete Sequence
1367 bp assembled on 2007-05-07
GenBank Submission: FJ638877
> BS16414.complete
GAAGTTATCAGTCGACATGATGTGGATTCAAAAGAACCCATTTTTAGGGT
TATTGCTCTGCAGTTTTTTGGCATTTTTCCAGAGTACATATGCAGAGGTT
GGAAAACTGGTGTGCTTCTACGATGCGCAGAGTTTTGTGCGTGAAGGCCC
CGCCCAAATGTCGCTGGCTGAACTGGAGCCCGCTCTACAGTTTTGCAACT
TTCTGGTCTACGGCTATGCGGGCATTGATGCCGTAACCTATAAGATCAAG
AGTTTGGATCCTTCGTTGACCAATGATCGTCAGCATTATCGACACATTAC
CGCTCTGCGCAAAAAATATCCGCATGTTCGCTTCCTGCTTTCGGTGGGCG
GCGATCGGGATGTGAACAGCGAGGGCGTGGCAGATAGTGACAAGTATCTA
AGATTACTGGAACAGTCGGAGCATCGGAAAAGCTTTCAGGCAAGCGTTTT
GGCGGAACTGAACAACAACGGCTTCGATGGCATCGATCTCGCCTGGCAGT
TTCCCAAAAATAGGCCCAAACTGCAGCAGGGCGTGTTTAAGAGGGTATGG
GGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCCGA
GGAGCATCGTGAGCAGTTTGCCACACTTCTCGAAGAGCTGCAATCCGATT
TGCGACGCGGTGGCCAACTGCTAACCGTCAGTATGTTGCCACATGTTTCA
GCGGAACTCTTTATTGATGTTCCAAAGGTTCTAAGTAACGTGGACTTCGT
CAACCTGGGCACCTATGACTTCCAAACGCCGGAACGCGATCCCAAAGTTG
CAGATCTGCCCACGCCATTGTATGCCATGTACGATCGGGATCCCAGTCAC
AATGTGCAGTACCAGGTGCAGTATTGGATGAACCAGACATCCGAAATCAG
TGTCCACAAACTGCACGTGGGAGTGACCAGTTATGGTCGAGCTTGGAATA
TGACCCGAAACTCCGGCATCACCGGCTATCCACCAATTCCGGCGGCAAAT
GGAGCTGCACCGCCGGGAAGGCAAACTGTTACGCCAGGATTGCTTAGCTG
GCCGGAGATTTGTGATTTGCTGCAGCAGCAACCACAGGATCGCGAGGTTC
CCCATCTGCGCAAAGTGGGCGATCCCACCAAGCGTTTTGGCATCTATGCG
TACCGGGCAGCGGATGATCAAGGGGAGAATGGCCTATGGGTGGGCTACGA
GGATCCCTTGACGGCGGCCATTAAGGCCGGATTTGTGCATGCCCAAGGAT
TGGGCGGAGTGGCCTTCCACGACCTGTCCATGGATGATTTTCGTGGTCAG
TGTGCTGGCGAAAAATTTCCCATTCTGCGAAGCATCAAGTTTAAGCTATA
AAAGCTTTCTAGACCAT
BS16414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-RA | 1335 | CG5154-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-RA | 1495 | CG5154-RA | 42..1379 | 16..1353 | 6690 | 100 | Plus |
Idgf4-RC | 1807 | CG1780-RC | 1124..1245 | 1106..1227 | 190 | 77 | Plus |
Idgf4-RB | 1541 | CG1780-RB | 1151..1272 | 1106..1227 | 190 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18394521..18395166 | 708..1353 | 3230 | 100 | Plus |
2R | 25286936 | 2R | 18393892..18394454 | 145..707 | 2815 | 100 | Plus |
2R | 25286936 | 2R | 18393707..18393838 | 16..147 | 660 | 100 | Plus |
X | 23542271 | X | 9928535..9928656 | 1227..1106 | 190 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:05:23 has no hits.
BS16414.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:14 Download gff for
BS16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 1..1335 | 17..1351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:29 Download gff for
BS16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 39..1383 | 6..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:41 Download gff for
BS16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 43..1375 | 17..1349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:14 Download gff for
BS16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 39..1383 | 6..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:33 Download gff for
BS16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 43..1375 | 17..1349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:33 Download gff for
BS16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18393708..18393837 | 17..146 | 100 | -> | Plus |
2R | 18393894..18394454 | 147..707 | 100 | -> | Plus |
2R | 18394521..18395162 | 708..1349 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:41 Download gff for
BS16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14281213..14281342 | 17..146 | 100 | -> | Plus |
arm_2R | 14281399..14281959 | 147..707 | 100 | -> | Plus |
arm_2R | 14282026..14282667 | 708..1349 | 100 | | Plus |
BS16414.pep Sequence
Translation from 16 to 1350
> BS16414.pep
MMWIQKNPFLGLLLCSFLAFFQSTYAEVGKLVCFYDAQSFVREGPAQMSL
AELEPALQFCNFLVYGYAGIDAVTYKIKSLDPSLTNDRQHYRHITALRKK
YPHVRFLLSVGGDRDVNSEGVADSDKYLRLLEQSEHRKSFQASVLAELNN
NGFDGIDLAWQFPKNRPKLQQGVFKRVWGSLRGWFSSSSVDEKSEEHREQ
FATLLEELQSDLRRGGQLLTVSMLPHVSAELFIDVPKVLSNVDFVNLGTY
DFQTPERDPKVADLPTPLYAMYDRDPSHNVQYQVQYWMNQTSEISVHKLH
VGVTSYGRAWNMTRNSGITGYPPIPAANGAAPPGRQTVTPGLLSWPEICD
LLQQQPQDREVPHLRKVGDPTKRFGIYAYRAADDQGENGLWVGYEDPLTA
AIKAGFVHAQGLGGVAFHDLSMDDFRGQCAGEKFPILRSIKFKL*
BS16414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-PA | 444 | CG5154-PA | 1..444 | 1..444 | 2361 | 100 | Plus |
Idgf4-PC | 442 | CG1780-PC | 9..442 | 13..444 | 1123 | 51.4 | Plus |
Idgf4-PB | 442 | CG1780-PB | 9..442 | 13..444 | 1123 | 51.4 | Plus |
Idgf4-PA | 442 | CG1780-PA | 9..442 | 13..444 | 1123 | 51.4 | Plus |
CG5210-PB | 452 | CG5210-PB | 31..450 | 31..444 | 1061 | 49.9 | Plus |