Clone Sequence Records
BS16415.3prime Sequence
906 bp (804 high quality bases) assembled on 2007-05-15
> BS16415.3prime
ATGGTCTAGAAAGCTTCTACTGCGACTTCTTGTCCTCCTTGGCGGCCCTG
CCCACGGGCTCATCCTTGAAGTGAAGGAACACGAATGAGAAGACAAACAC
GCCGATCATCATTGAGAAGGCGCTGGTGTAGTAGGGGAATGCGCTCGGGA
TAAAGCGCTCGTACTGTGTGTGCTCCAGCGGACGCACCGACACCTGGGTG
GTGCTGTACAGATGCGTGTAGCCCACGCGATTGTAGTCCACCTTGAACTG
ATAAACGCCGTAGACGTCGGGTATCTTGAATTTGGCCTGGTAGGCGCCCG
TGTTCGTTTGCTTCAGATAGGTGCGGACGAAGGGATCGATGCGCACGAAC
TCCAGTTGAATGTCGCTGGCCTTAAAGGCGCGCCACTCGCCCTGCACCAG
CTCCTCGATGCCGATGGTGTAGACGACCGGATCGGTGATGGTGTACGCCT
GATCCGGTGGCAGCAGCTCGCCCTCCTTGTGATGTTGCACGGATGCCACG
CGCAAGCGGCCAGTCTCTCCAAATACCCACTTGCTAATGGACTCGGCCAC
GTCGCGATTACCGGCCAGCTTGTGGAACACACCGCTCTGTGCGTACTGCA
CGGCCGTTGTGAAGCTCTCGTCAGAGAAGAAGAGCAGCGAGCCGGAGAAC
ACTACGCGGGCATTGTTCCTCGCCTGCAGGGCGGCGATTAGCAGCGTGCC
TCGGCCAACGGCATGCGGATAGTCGGAGACACTTGCCTCGGGATTGTAGC
TATAGGCGGTGCTCTCGGCGGTCAGCAGCTTGAGTACCAGCGGGTTCTCC
TTGTCGGCAATCAGTCCTGTACCGCGATAGAGCAGCGGTGCGGCATCCGC
CTGCCTGTTGGCCTTGCCAACATGGTGTCGGGCTGTATAAGATTCTTGGC
GGAGGT
BS16415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9022-PA | 1350 | Ost48-RA | 499..1350 | 868..17 | 4260 | 100 | Minus |
| CG9022-PA | 1350 | Ost48-RA | 460..494 | 906..872 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ost48-RA | 1513 | CG9022-RA | 544..1434 | 906..17 | 4400 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9157008..9157898 | 17..906 | 4375 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:59:49 has no hits.
BS16415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:27 Download gff for
BS16415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9022-PA | 460..1350 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:34 Download gff for
BS16415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 544..1434 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:44 Download gff for
BS16415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 544..1434 | 17..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:44 Download gff for
BS16415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9157008..9157898 | 17..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:34 Download gff for
BS16415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9051041..9051931 | 17..906 | 99 | | Plus |
BS16415.5prime Sequence
856 bp (761 high quality bases) assembled on 2007-05-15
> BS16415.5prime
GAAGTTATCAGTCGACATGATGTGGAAGGCTCTCCTGATCGCCGTTTTGG
CGATTGCCCACTGCCAGGCGGTACTGGAAACGGACGCCAACACCTTGGTT
CTGCTGGACAACCTGGCCATCCGGGAAACCCACTCGATCTTCTTCAAATC
GCTGCAGGATCGCGGATTTAAGCTCACCTACAAACTGGCGGATGACTCCA
GCCTGCTGCTGTCCAAATACGGTGAATATCTGTACAAGAACGTCATCATA
TTCGCACCAAGTGTCGAGGAATTCGGCGGCGATGTGAGCGTGGAGCGTTT
GGCCCAGTTCGTCGACGATGGCGGCAATGTTCTGGTGGCGGGCAGCGAGA
AATCCGGCGACGCGCTAAGGGAATTCGCCTCCGAGTGCGGCTTCGAGCTG
GACGAGGAGAATGCGGCGGTCATTGACCATCTGCACTACGATGTTAGCGA
TGCTGGCGAGCACACAACCATCCTGACCTCCGCCAAGAATCTTATACAGG
CCGACACCATTGTGGGCAAGGCCAACAGGCAGGCGGATGCCGCACCGCTG
CTCTATCGCGGTACAGGACTGATTGCCGACAAGGAGAACCCGCTGGTACT
CAAGCTGCTGACCGCCGAGAGCACCGCCTATAGCTACAATCCCGAGGCAA
GTGTCTCCGACTATCCGCATGCCGTTGGCCGAGGCACGCTGCTAATCGCC
GCCCTGCAGGCGAGGAACAATGCCCGCGTAGTGTTCTCCGGCTCGCTGCT
CTTCTTCTCTGACGAGAGCTTCACAACGGCCGTGCAGTACGCACAGAGCG
GTGTGTTCCACAAGCTGGCCGGTAATCGCGACGTGGCCGAGTCCATTAGC
AAGTGG
BS16415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9022-PA | 1350 | Ost48-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ost48-RA | 1513 | CG9022-RA | 85..924 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9157518..9158216 | 856..158 | 3495 | 100 | Minus |
| X | 23542271 | X | 9158290..9158431 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:49:24 has no hits.
BS16415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:14 Download gff for
BS16415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9022-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:10 Download gff for
BS16415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 85..924 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:33 Download gff for
BS16415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 85..924 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:33 Download gff for
BS16415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9157518..9158215 | 159..856 | 100 | <- | Minus |
| X | 9158290..9158431 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:10 Download gff for
BS16415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9051551..9052248 | 159..856 | 100 | <- | Minus |
| arm_X | 9052323..9052464 | 17..158 | 100 | | Minus |
BS16415.complete Sequence
1382 bp assembled on 2007-05-07
GenBank Submission: FJ638143
> BS16415.complete
GAAGTTATCAGTCGACATGATGTGGAAGGCTCTCCTGATCGCCGTTTTGG
CGATTGCCCACTGCCAGGCGGTACTGGAAACGGACGCCAACACCTTGGTT
CTGCTGGACAACCTGGCCATCCGGGAAACCCACTCGATCTTCTTCAAATC
GCTGCAGGATCGCGGATTTAAGCTCACCTACAAACTGGCGGATGACTCCA
GCCTGCTGCTGTCCAAATACGGTGAATATCTGTACAAGAACGTCATCATA
TTCGCACCAAGTGTCGAGGAATTCGGCGGCGATGTGAGCGTGGAGCGTTT
GGCCCAGTTCGTCGACGATGGCGGCAATGTTCTGGTGGCGGGCAGCGAGA
AATCCGGCGACGCGCTAAGGGAATTCGCCTCCGAGTGCGGCTTCGAGCTG
GACGAGGAGAATGCGGCGGTCATTGACCATCTGCACTACGATGTTAGCGA
TGCTGGCGAGCACACAACCATCCTGACCTCCGCCAAGAATCTTATACAGG
CCGACACCATTGTGGGCAAGGCCAACAGGCAGGCGGATGCCGCACCGCTG
CTCTATCGCGGTACAGGACTGATTGCCGACAAGGAGAACCCGCTGGTACT
CAAGCTGCTGACCGCCGAGAGCACCGCCTATAGCTACAATCCCGAGGCAA
GTGTCTCCGACTATCCGCATGCCGTTGGCCGAGGCACGCTGCTAATCGCC
GCCCTGCAGGCGAGGAACAATGCCCGCGTAGTGTTCTCCGGCTCGCTGCT
CTTCTTCTCTGACGAGAGCTTCACAACGGCCGTGCAGTACGCACAGAGCG
GTGTGTTCCACAAGCTGGCCGGTAATCGCGACGTGGCCGAGTCCATTAGC
AAGTGGGTATTTGGAGAGACTGGCCGCTTGCGCGTGGCATCCGTGCAACA
TCACAAGGAGGGCGAGCTGCTGCCACCGGATCAGGCGTACACCATCACCG
ATCCGGTCGTCTACACCATCGGCATCGAGGAGCTGGTGCAGGGCGAGTGG
CGCGCCTTTAAGGCCAGCGACATTCAACTGGAGTTCGTGCGCATCGATCC
CTTCGTCCGCACCTATCTGAAGCAAACGAACACGGGCGCCTACCAGGCCA
AATTCAAGATACCCGACGTCTACGGCGTTTATCAGTTCAAGGTGGACTAC
AATCGCGTGGGCTACACGCATCTGTACAGCACCACCCAGGTGTCGGTGCG
TCCGCTGGAGCACACACAGTACGAGCGCTTTATCCCGAGCGCATTCCCCT
ACTACACCAGCGCCTTCTCAATGATGATCGGCGTGTTTGTCTTCTCATTC
GTGTTCCTTCACTTCAAGGATGAGCCCGTGGGCAGGGCCGCCAAGGAGGA
CAAGAAGTCGCAGTAGAAGCTTTCTAGACCAT
BS16415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ost48-RA | 1350 | CG9022-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ost48-RA | 1513 | CG9022-RA | 85..1434 | 17..1366 | 6750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9157008..9158216 | 1366..158 | 6045 | 100 | Minus |
| X | 23542271 | X | 9158290..9158431 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:59:15 has no hits.
BS16415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:16 Download gff for
BS16415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:30 Download gff for
BS16415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 81..1430 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:28 Download gff for
BS16415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 85..1434 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:16 Download gff for
BS16415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 81..1430 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:56 Download gff for
BS16415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ost48-RA | 85..1434 | 17..1366 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:56 Download gff for
BS16415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9157008..9158215 | 159..1366 | 100 | <- | Minus |
| X | 9158290..9158431 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:28 Download gff for
BS16415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9051041..9052248 | 159..1366 | 100 | <- | Minus |
| arm_X | 9052323..9052464 | 17..158 | 100 | | Minus |
BS16415.pep Sequence
Translation from 16 to 1365
> BS16415.pep
MMWKALLIAVLAIAHCQAVLETDANTLVLLDNLAIRETHSIFFKSLQDRG
FKLTYKLADDSSLLLSKYGEYLYKNVIIFAPSVEEFGGDVSVERLAQFVD
DGGNVLVAGSEKSGDALREFASECGFELDEENAAVIDHLHYDVSDAGEHT
TILTSAKNLIQADTIVGKANRQADAAPLLYRGTGLIADKENPLVLKLLTA
ESTAYSYNPEASVSDYPHAVGRGTLLIAALQARNNARVVFSGSLLFFSDE
SFTTAVQYAQSGVFHKLAGNRDVAESISKWVFGETGRLRVASVQHHKEGE
LLPPDQAYTITDPVVYTIGIEELVQGEWRAFKASDIQLEFVRIDPFVRTY
LKQTNTGAYQAKFKIPDVYGVYQFKVDYNRVGYTHLYSTTQVSVRPLEHT
QYERFIPSAFPYYTSAFSMMIGVFVFSFVFLHFKDEPVGRAAKEDKKSQ*
BS16415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ost48-PA | 449 | CG9022-PA | 1..449 | 1..449 | 2294 | 100 | Plus |
