Clone BS16423 Report

Search the DGRC for BS16423

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG3907-RA
Protein status:BS16423.pep: full length peptide match
Sequenced Size:1235

Clone Sequence Records

BS16423.complete Sequence

1235 bp assembled on 2009-12-08

GenBank Submission: KX802152

> BS16423.complete
GAAGTTATCAGTCGACATGGACTGCCACCATCGCATTGAAGTGCCCCTGC
GGGCCGGAAAGAAAATGAAGAAGCGTCGGGAGCTGGACGCCCTGATAGCC
TCCCAGTCGTCCTCGGGCAAGAGAGCCAACCGGAGAGTCCCCGGAGGCAC
CAACTCCCAGGACAAGCTGCTCTCCGTCTCGACCGACGACCCTGAGGATT
ACGCATGGACAAATGTCGCTGGCAGTCGCCGCAGCCATCGAAAAATAGCC
TATTTCCGCATGTGCGGCCCGCTTCTATTCGGCATTATGGGCATTCTGAT
TGTGGGAATTTTGTACTGGCTCTACTTCGATCTGCGCCAGCAACTCACCG
ACTATCGCCAGAAGATCGAGGAGGTGTCTGCCATGAGCAAGAACTTCCCG
GACACCCTGCAAAGATGGCACGAGACTTCGTCCTACCTGCTGAAGAACCA
AACAGCCGTCATTTCGGAAATAAATGATTTGCAAAAATCAATGGAGAGCC
TGCGGAACAACTTTAGCAACCTGGAGGCGGCCGTGGCAGCGCAAAGAAAC
CACGGCAAGGACGAGAAGTTGGTGGCTGATTTCGGGGCCAAGATAGAAGC
CGTCGCCACCGACATAGAGGCCATCAAGGAGCACTACAATAAGTACACCG
AGGTGCAGAAAACACTGCAGGCCGAAACGGAAGCCTTAAAGCTCAATCTC
TCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGA
TGATATTGCTGCGCTGAACAAAACCACTTTTAATTCATTTAAACTACTGG
CCAACGATCTGAAGAATGTGAATAATACCCTAAGTCAAACAACGAAAATC
CTCAGCGAGGAAATATCTCTGCACAAGACGAAAATAGACGACCTGCTGGA
TCGATCTGAAAACATTACGTCCCATGTGGCCACAATAAGTAACAGCTGGC
CGGAATATAAACAGAAAGTGACCAGTTTCGATGAATCTTTGGAGAGAATT
GAGAAAGAGATAACGCTGGCAAACAACAAGAACAATATGCTGGCCGCTTC
CGTGGATCAGCTAAAGAACTTTTGCATTCAGAGCATGGGCAATATTAAAG
CACCCAGCAGCGAAGACGGATCCGTAGTCCCCAAGCCCGAAGCGATTGCC
GTCAAGCAGGAAGTCATAAAGCCGTCTGCAAATGCTACAGTGAAGCTTCA
GGAATCCTTGAAGCTGTAAAAGCTTTCTAGACCAT

BS16423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-RA 1203 CG3907-PA 1..1203 17..1219 6015 100 Plus
CG3907-RB 1203 CG3907-PB 1..1203 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-RA 1701 CG3907-RA 158..1361 16..1219 6020 100 Plus
CG3907-RB 1739 CG3907-RB 196..1399 16..1219 6020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24021003..24021320 691..374 1590 100 Minus
2R 25286936 2R 24021790..24021982 208..16 965 100 Minus
2R 25286936 2R 24020755..24020942 877..690 940 100 Minus
2R 25286936 2R 24021376..24021542 374..208 835 100 Minus
2R 25286936 2R 24020566..24020699 1009..876 670 100 Minus
2R 25286936 2R 24020384..24020511 1135..1008 640 100 Minus
2R 25286936 2R 24020238..24020323 1219..1134 430 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:28:28 has no hits.

BS16423.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:26 Download gff for BS16423.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 158..1358 17..1217 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:03 Download gff for BS16423.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 197..1397 17..1217 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:39 Download gff for BS16423.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 158..1358 17..1217 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:13 Download gff for BS16423.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 197..1397 17..1217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:13 Download gff for BS16423.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24021790..24021981 17..208 100   Minus
2R 24020240..24020321 1136..1217 100 <- Minus
2R 24020384..24020509 1010..1135 100 <- Minus
2R 24020566..24020697 878..1009 100 <- Minus
2R 24020755..24020940 692..877 100 <- Minus
2R 24021003..24021319 375..691 100 <- Minus
2R 24021376..24021541 209..374 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:03 Download gff for BS16423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19907763..19907844 1136..1217 100 <- Minus
arm_2R 19907907..19908032 1010..1135 100 <- Minus
arm_2R 19908089..19908220 878..1009 100 <- Minus
arm_2R 19908278..19908463 692..877 100 <- Minus
arm_2R 19908526..19908842 375..691 100 <- Minus
arm_2R 19908899..19909064 209..374 100 <- Minus
arm_2R 19909313..19909504 17..208 100   Minus

BS16423.5prime Sequence

840 bp (685 high quality bases) assembled on 2007-05-15

> BS16423.5prime
GAAGTTATCAGTCGACATGGACTGCCACCATCGCATTGAAGTGCCCCTGC
GGGCCGGAAAGAAAATGAAGAAGCGTCGGGAGCTGGACGCCCTGATAGCC
TCCCAGTCGTCCTCGGGCAAGAGAGCCAACCGGAGAGTCCCCGGAGGCAC
CAACTCCCAGGACAAGCTGCTCTCCGTCTCGACCGACGACCCTGAGGATT
ACGCATGGACAAATGTCGCTGGCAGTCGCCGCAGCCATCGAAAAATAGCC
TATTTCCGCATGTGCGGCCCGCTTCTATTCGGCATTATGGGCATTCTGAT
TGTGGGAATTTTGTACTGGCTCTACTTCGATCTGCGCCAGCAACTCACCG
ACTATCGCCAGAAGATCGAGGAGGTGTCTGCCATGAGCAAGAACTTCCCG
GACACCCTGCAAAGATGGCACGAGACTTCGTCCTACCTGCTGAAGAACCA
AACAGCCGTCATTTCGGAAATAAATGATTTGCAAAAATCAATGGAGAGCC
TGCGGAACAACTTTAGCAACCTGGAGGCGGCCGTGGCAGCGCAAAGAAAC
CACGGCAAGGACGAGAAGTTGGTGGCTGATTTCGGGGCCAAGATAGAAGC
CGTCGCCACCGACATAGAGGCCATCAAGGAGCACTACAATAAGTACACCG
AGGTGCAGAAAACACTGCAGGCCGAAACGGAAGCCTTAAAGCTCAATCTC
TCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGA
TGATATTGCTGCGCTGAACAAAACCACTTTTAATTCATTTAAACTACTGG
CCAACGATCTGAAGAATGTGAATAATAACCCTAGTCAAAC

BS16423.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-PB 1203 CG3907-RB 1..811 17..827 4055 100 Plus
CG3907-PA 1203 CG3907-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-RA 1701 CG3907-RA 158..982 16..840 4080 99.8 Plus
CG3907-RB 1739 CG3907-RB 196..1020 16..840 4080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24021003..24021320 691..374 1590 100 Minus
2R 25286936 2R 24021790..24021982 208..16 965 100 Minus
2R 25286936 2R 24021376..24021542 374..208 835 100 Minus
2R 25286936 2R 24020792..24020942 840..690 710 98 Minus
Blast to na_te.dros performed on 2015-02-11 04:07:31 has no hits.

BS16423.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:03 Download gff for BS16423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:04 Download gff for BS16423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 196..1020 16..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:05 Download gff for BS16423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 196..1020 16..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:05 Download gff for BS16423.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24020792..24020940 692..840 98 <- Minus
2R 24021003..24021319 375..691 100 <- Minus
2R 24021376..24021541 209..374 100 <- Minus
2R 24021790..24021982 16..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:04 Download gff for BS16423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19908315..19908463 692..840 98 <- Minus
arm_2R 19908526..19908842 375..691 100 <- Minus
arm_2R 19908899..19909064 209..374 100 <- Minus
arm_2R 19909313..19909505 16..208 100   Minus

BS16423.pep Sequence

Translation from 16 to 1218

> BS16423.pep
MDCHHRIEVPLRAGKKMKKRRELDALIASQSSSGKRANRRVPGGTNSQDK
LLSVSTDDPEDYAWTNVAGSRRSHRKIAYFRMCGPLLFGIMGILIVGILY
WLYFDLRQQLTDYRQKIEEVSAMSKNFPDTLQRWHETSSYLLKNQTAVIS
EINDLQKSMESLRNNFSNLEAAVAAQRNHGKDEKLVADFGAKIEAVATDI
EAIKEHYNKYTEVQKTLQAETEALKLNLSQLPTIQANALPANLSDDIAAL
NKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENI
TSHVATISNSWPEYKQKVTSFDESLERIEKEITLANNKNNMLAASVDQLK
NFCIQSMGNIKAPSSEDGSVVPKPEAIAVKQEVIKPSANATVKLQESLKL
*

BS16423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-PA 400 CG3907-PA 1..400 1..400 2017 100 Plus
CG3907-PB 400 CG3907-PB 1..400 1..400 2017 100 Plus