Clone Sequence Records
BS16423.complete Sequence
1235 bp assembled on 2009-12-08
GenBank Submission: KX802152
> BS16423.complete
GAAGTTATCAGTCGACATGGACTGCCACCATCGCATTGAAGTGCCCCTGC
GGGCCGGAAAGAAAATGAAGAAGCGTCGGGAGCTGGACGCCCTGATAGCC
TCCCAGTCGTCCTCGGGCAAGAGAGCCAACCGGAGAGTCCCCGGAGGCAC
CAACTCCCAGGACAAGCTGCTCTCCGTCTCGACCGACGACCCTGAGGATT
ACGCATGGACAAATGTCGCTGGCAGTCGCCGCAGCCATCGAAAAATAGCC
TATTTCCGCATGTGCGGCCCGCTTCTATTCGGCATTATGGGCATTCTGAT
TGTGGGAATTTTGTACTGGCTCTACTTCGATCTGCGCCAGCAACTCACCG
ACTATCGCCAGAAGATCGAGGAGGTGTCTGCCATGAGCAAGAACTTCCCG
GACACCCTGCAAAGATGGCACGAGACTTCGTCCTACCTGCTGAAGAACCA
AACAGCCGTCATTTCGGAAATAAATGATTTGCAAAAATCAATGGAGAGCC
TGCGGAACAACTTTAGCAACCTGGAGGCGGCCGTGGCAGCGCAAAGAAAC
CACGGCAAGGACGAGAAGTTGGTGGCTGATTTCGGGGCCAAGATAGAAGC
CGTCGCCACCGACATAGAGGCCATCAAGGAGCACTACAATAAGTACACCG
AGGTGCAGAAAACACTGCAGGCCGAAACGGAAGCCTTAAAGCTCAATCTC
TCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGA
TGATATTGCTGCGCTGAACAAAACCACTTTTAATTCATTTAAACTACTGG
CCAACGATCTGAAGAATGTGAATAATACCCTAAGTCAAACAACGAAAATC
CTCAGCGAGGAAATATCTCTGCACAAGACGAAAATAGACGACCTGCTGGA
TCGATCTGAAAACATTACGTCCCATGTGGCCACAATAAGTAACAGCTGGC
CGGAATATAAACAGAAAGTGACCAGTTTCGATGAATCTTTGGAGAGAATT
GAGAAAGAGATAACGCTGGCAAACAACAAGAACAATATGCTGGCCGCTTC
CGTGGATCAGCTAAAGAACTTTTGCATTCAGAGCATGGGCAATATTAAAG
CACCCAGCAGCGAAGACGGATCCGTAGTCCCCAAGCCCGAAGCGATTGCC
GTCAAGCAGGAAGTCATAAAGCCGTCTGCAAATGCTACAGTGAAGCTTCA
GGAATCCTTGAAGCTGTAAAAGCTTTCTAGACCAT
BS16423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-RA | 1203 | CG3907-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
CG3907-RB | 1203 | CG3907-PB | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-RA | 1701 | CG3907-RA | 158..1361 | 16..1219 | 6020 | 100 | Plus |
CG3907-RB | 1739 | CG3907-RB | 196..1399 | 16..1219 | 6020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24021003..24021320 | 691..374 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 24021790..24021982 | 208..16 | 965 | 100 | Minus |
2R | 25286936 | 2R | 24020755..24020942 | 877..690 | 940 | 100 | Minus |
2R | 25286936 | 2R | 24021376..24021542 | 374..208 | 835 | 100 | Minus |
2R | 25286936 | 2R | 24020566..24020699 | 1009..876 | 670 | 100 | Minus |
2R | 25286936 | 2R | 24020384..24020511 | 1135..1008 | 640 | 100 | Minus |
2R | 25286936 | 2R | 24020238..24020323 | 1219..1134 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:28:28 has no hits.
BS16423.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:26 Download gff for
BS16423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RA | 158..1358 | 17..1217 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:03 Download gff for
BS16423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 197..1397 | 17..1217 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:39 Download gff for
BS16423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RA | 158..1358 | 17..1217 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:13 Download gff for
BS16423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 197..1397 | 17..1217 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:13 Download gff for
BS16423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24021790..24021981 | 17..208 | 100 | | Minus |
2R | 24020240..24020321 | 1136..1217 | 100 | <- | Minus |
2R | 24020384..24020509 | 1010..1135 | 100 | <- | Minus |
2R | 24020566..24020697 | 878..1009 | 100 | <- | Minus |
2R | 24020755..24020940 | 692..877 | 100 | <- | Minus |
2R | 24021003..24021319 | 375..691 | 100 | <- | Minus |
2R | 24021376..24021541 | 209..374 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:03 Download gff for
BS16423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19907763..19907844 | 1136..1217 | 100 | <- | Minus |
arm_2R | 19907907..19908032 | 1010..1135 | 100 | <- | Minus |
arm_2R | 19908089..19908220 | 878..1009 | 100 | <- | Minus |
arm_2R | 19908278..19908463 | 692..877 | 100 | <- | Minus |
arm_2R | 19908526..19908842 | 375..691 | 100 | <- | Minus |
arm_2R | 19908899..19909064 | 209..374 | 100 | <- | Minus |
arm_2R | 19909313..19909504 | 17..208 | 100 | | Minus |
BS16423.5prime Sequence
840 bp (685 high quality bases) assembled on 2007-05-15
> BS16423.5prime
GAAGTTATCAGTCGACATGGACTGCCACCATCGCATTGAAGTGCCCCTGC
GGGCCGGAAAGAAAATGAAGAAGCGTCGGGAGCTGGACGCCCTGATAGCC
TCCCAGTCGTCCTCGGGCAAGAGAGCCAACCGGAGAGTCCCCGGAGGCAC
CAACTCCCAGGACAAGCTGCTCTCCGTCTCGACCGACGACCCTGAGGATT
ACGCATGGACAAATGTCGCTGGCAGTCGCCGCAGCCATCGAAAAATAGCC
TATTTCCGCATGTGCGGCCCGCTTCTATTCGGCATTATGGGCATTCTGAT
TGTGGGAATTTTGTACTGGCTCTACTTCGATCTGCGCCAGCAACTCACCG
ACTATCGCCAGAAGATCGAGGAGGTGTCTGCCATGAGCAAGAACTTCCCG
GACACCCTGCAAAGATGGCACGAGACTTCGTCCTACCTGCTGAAGAACCA
AACAGCCGTCATTTCGGAAATAAATGATTTGCAAAAATCAATGGAGAGCC
TGCGGAACAACTTTAGCAACCTGGAGGCGGCCGTGGCAGCGCAAAGAAAC
CACGGCAAGGACGAGAAGTTGGTGGCTGATTTCGGGGCCAAGATAGAAGC
CGTCGCCACCGACATAGAGGCCATCAAGGAGCACTACAATAAGTACACCG
AGGTGCAGAAAACACTGCAGGCCGAAACGGAAGCCTTAAAGCTCAATCTC
TCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGA
TGATATTGCTGCGCTGAACAAAACCACTTTTAATTCATTTAAACTACTGG
CCAACGATCTGAAGAATGTGAATAATAACCCTAGTCAAAC
BS16423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-PB | 1203 | CG3907-RB | 1..811 | 17..827 | 4055 | 100 | Plus |
CG3907-PA | 1203 | CG3907-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-RA | 1701 | CG3907-RA | 158..982 | 16..840 | 4080 | 99.8 | Plus |
CG3907-RB | 1739 | CG3907-RB | 196..1020 | 16..840 | 4080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24021003..24021320 | 691..374 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 24021790..24021982 | 208..16 | 965 | 100 | Minus |
2R | 25286936 | 2R | 24021376..24021542 | 374..208 | 835 | 100 | Minus |
2R | 25286936 | 2R | 24020792..24020942 | 840..690 | 710 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:07:31 has no hits.
BS16423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:03 Download gff for
BS16423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-PA | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:04 Download gff for
BS16423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 196..1020 | 16..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:05 Download gff for
BS16423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 196..1020 | 16..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:05 Download gff for
BS16423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24020792..24020940 | 692..840 | 98 | <- | Minus |
2R | 24021003..24021319 | 375..691 | 100 | <- | Minus |
2R | 24021376..24021541 | 209..374 | 100 | <- | Minus |
2R | 24021790..24021982 | 16..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:04 Download gff for
BS16423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19908315..19908463 | 692..840 | 98 | <- | Minus |
arm_2R | 19908526..19908842 | 375..691 | 100 | <- | Minus |
arm_2R | 19908899..19909064 | 209..374 | 100 | <- | Minus |
arm_2R | 19909313..19909505 | 16..208 | 100 | | Minus |
BS16423.pep Sequence
Translation from 16 to 1218
> BS16423.pep
MDCHHRIEVPLRAGKKMKKRRELDALIASQSSSGKRANRRVPGGTNSQDK
LLSVSTDDPEDYAWTNVAGSRRSHRKIAYFRMCGPLLFGIMGILIVGILY
WLYFDLRQQLTDYRQKIEEVSAMSKNFPDTLQRWHETSSYLLKNQTAVIS
EINDLQKSMESLRNNFSNLEAAVAAQRNHGKDEKLVADFGAKIEAVATDI
EAIKEHYNKYTEVQKTLQAETEALKLNLSQLPTIQANALPANLSDDIAAL
NKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENI
TSHVATISNSWPEYKQKVTSFDESLERIEKEITLANNKNNMLAASVDQLK
NFCIQSMGNIKAPSSEDGSVVPKPEAIAVKQEVIKPSANATVKLQESLKL
*
BS16423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-PA | 400 | CG3907-PA | 1..400 | 1..400 | 2017 | 100 | Plus |
CG3907-PB | 400 | CG3907-PB | 1..400 | 1..400 | 2017 | 100 | Plus |