Clone Sequence Records
BS16425.3prime Sequence
900 bp (819 high quality bases) assembled on 2007-05-15
> BS16425.3prime
ATGGTCTAGAAAGCTTTTAGCCCTTGATAACTGCAATTGGGCGCATCTTG
ATGCACTTTTTGCTGATGCCAGCTGCGTGACAGGTGTCGACCACATCGGT
CACGTCCTTGTAAGATTCGGGTGCCTCCTCCATGACCAGTTTGGGCGAGG
CCACGCGTATGGCGATGCCCAACTGGTCCAGCTTGTCCAGCACATCCTTG
TAGTCCAGATTGCGCCGGGATTTGGCTCGAGATAGTGCACGACCCGCTCC
GTGGCAAGTGCTACCGAACGTCTCCTGCATGCCCTGCTCCGTTCCAGTTA
GCACGTAACTGCAAGTGCCCATGGTTCCACCGACGAGGACTGGCTGCCCG
GTAAGCTGATAGTCCACTGGGATCAGGGGATGGTGTGGCGGGAAGGCGCG
CGTGGAGCCCTTCCGGTGAACCAACAGCTTCCGCTCCTTGCCGTCCACCA
TGTGGTTCTCCACCTTGGCAATATTGTGCGAAACGTCATAGATAACGTGC
ATGTCGAGATCATCGGGTGTGGTGTTAAACATCTTGGCAAACGCTTGACG
GGTGAGGAATGTCATGGAGCTGCGATTCACCCAGGCAAAGTTCGCAGCCG
CCGCCATGGCCTTCAAGTAGTCCTGTCCCTCCACCGAATTGATCCTGGCG
CAGGCCAGCTGCCGGTCATTGGTCTCGATCTTGTCCCGCTTCATGGCCTT
CTCCATCTGGACCAGGGCGTCGGTAGCGACCTGGTGGCCGAAGCCACGGC
TGCCCGAGTGAATCATCACCACCACCTGGCCCTTCTCCTCGATGCCCATC
TTGGAGGCGCTCCACTTGTCGTAGATTTCGTCCACCACCTGGATCTCGGC
GTAGTGATTGCCCGCACCCAGAGTGCCCAGCTGGGGGCAGCCCTCGCTTC
BS16425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9987-PA | 1521 | CG9987-RA | 652..1521 | 886..17 | 4325 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9987-RA | 1742 | CG9987-RA | 767..1649 | 900..17 | 4380 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19431409..19432064 | 900..244 | 3220 | 99.7 | Minus |
| 2L | 23513712 | 2L | 19432123..19432351 | 245..17 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:57:50 has no hits.
BS16425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:31 Download gff for
BS16425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-PA | 639..1521 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:39 Download gff for
BS16425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 767..1649 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:02 Download gff for
BS16425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 767..1649 | 17..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:02 Download gff for
BS16425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19432124..19432351 | 17..244 | 100 | | Minus |
| 2L | 19431409..19432063 | 245..900 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:39 Download gff for
BS16425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19431409..19432063 | 245..900 | 99 | -> | Minus |
| arm_2L | 19432124..19432351 | 17..244 | 100 | | Minus |
BS16425.5prime Sequence
811 bp (722 high quality bases) assembled on 2007-05-15
> BS16425.5prime
GAAGTTATCAGTCGACATGGTGGTGCGTCCGTACAACGATGAGCTCCGGT
ACCTGGAGAAAGTGAGCGACCACTGCTGGCGCATCAAGAAGGGCTTCCAG
CCAAATATGAATGTGGAGGGGTGTTTCTATGTGAACAGCCGGCTGGAGCG
CCTGATGCTGGAGGAGCTGAAGAACTCCTGTCGCCCGGGCGCAGTGGGTG
GCTTCCTGCCTGGCGTCAAGCAGATAGCCAATGTGGCCGCGTTGCCGGGC
ATCGTGGGCAGGTCCATTGGACTGCCCGACATTCATTCCGGCTACGGATT
TGCCATCGGGAACATGGCTGCTTTCGACATGAACGATCCGCTGTCCGTTG
TAAGTCCCGGCGGCGTGGGTTTCGACATCAACTGTGGCGTGCGTCTGCTG
CGCACGAATCTGTACGAGAAGGATGTGCAGCCGGTGAAGGAGCAACTGGC
GCAGTCCCTGTTCGATCACATACCCGTGGGTGTGGGCTCCAAGGGCATCA
TACCCATGAATGCCCGCGATCTGGAGGAGGCCCTCGAAATGGGCATGGAC
TGGTCGCTGCGCGAGGGATACGTGTGGGCGGAGGACAAGGAGCATTGCGA
GGAGTACGGCCGCATGCTGAACGCCGATCCCGCCAAGGTGAGCATGCGGG
CCAAGAAGCGAGGGCTGCCCCAGCTGGGCACTCTGGGTGCGGGCAATCAC
TACGCCGAGATCCAGGTGGTGGACGAAATCTACGACAAGTGGAGCGCCTC
CAAGATGGGCATCGAGGAGAAGGGCCAGGTGGTGGTGATGATTCACTCGG
GCAGCCGTGGC
BS16425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9987-PA | 1521 | CG9987-RA | 1..795 | 17..811 | 3950 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9987-RA | 1742 | CG9987-RA | 129..923 | 17..811 | 3960 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19430771..19431565 | 17..811 | 3960 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-13 06:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3663..3745 | 162..244 | 118 | 60.2 | Plus |
BS16425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:45 Download gff for
BS16425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-PA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:53 Download gff for
BS16425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 122..923 | 10..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:04 Download gff for
BS16425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 122..923 | 10..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:04 Download gff for
BS16425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19430764..19431565 | 10..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:53 Download gff for
BS16425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19430764..19431565 | 10..811 | 99 | | Plus |
BS16425.complete Sequence
1553 bp assembled on 2007-05-07
GenBank Submission: FJ638878
> BS16425.complete
GAAGTTATCAGTCGACATGGTGGTGCGTCCGTACAACGATGAGCTCCGGT
ACCTGGAGAAAGTGAGCGACCACTGCTGGCGCATCAAGAAGGGCTTCCAG
CCAAATATGAATGTGGAGGGGTGTTTCTATGTGAACAGCCGGCTGGAGCG
CCTGATGCTGGAGGAGCTGAAGAACTCCTGTCGCCCGGGCGCAGTGGGTG
GCTTCCTGCCTGGCGTCAAGCAGATAGCCAATGTGGCCGCGTTGCCGGGC
ATCGTGGGCAGGTCCATTGGACTGCCCGACATTCATTCCGGCTACGGATT
TGCCATCGGGAACATGGCTGCTTTCGACATGAACGATCCGCTGTCCGTTG
TAAGTCCCGGCGGCGTGGGTTTCGACATCAACTGTGGCGTGCGTCTGCTG
CGCACGAATCTGTACGAGAAGGATGTGCAGCCGGTGAAGGAGCAACTGGC
GCAGTCCCTGTTCGATCACATACCCGTGGGTGTGGGCTCCAAGGGCATCA
TACCCATGAATGCCCGCGATCTGGAGGAGGCCCTCGAAATGGGCATGGAC
TGGTCGCTGCGCGAGGGATACGTGTGGGCGGAGGACAAGGAGCATTGCGA
GGAGTACGGCCGCATGCTGAACGCCGATCCCGCCAAGGTGAGCATGCGGG
CCAAGAAGCGAGGGCTGCCCCAGCTGGGCACTCTGGGTGCGGGCAATCAC
TACGCCGAGATCCAGGTGGTGGACGAAATCTACGACAAGTGGAGCGCCTC
CAAGATGGGCATCGAGGAGAAGGGCCAGGTGGTGGTGATGATTCACTCGG
GCAGCCGTGGCTTCGGCCACCAGGTCGCTACCGACGCCCTGGTCCAGATG
GAGAAGGCCATGAAGCGGGACAAGATCGAGACCAATGACCGGCAGCTGGC
CTGCGCCAGGATCAATTCGGTGGAGGGACAGGACTACTTGAAGGCCATGG
CGGCGGCTGCGAACTTTGCCTGGGTGAATCGCAGCTCCATGACATTCCTC
ACCCGTCAAGCGTTTGCCAAGATGTTTAACACCACACCCGATGATCTCGA
CATGCACGTTATCTATGACGTTTCGCACAATATTGCCAAGGTGGAGAACC
ACATGGTGGACGGCAAGGAGCGGAAGCTGTTGGTTCACCGGAAGGGCTCC
ACGCGCGCCTTCCCGCCACACCATCCCCTGATCCCAGTGGACTATCAGCT
TACCGGGCAGCCAGTCCTCGTCGGTGGAACCATGGGCACTTGCAGTTACG
TGCTAACTGGAACGGAGCAGGGCATGCAGGAGACGTTCGGTAGCACTTGC
CACGGAGCGGGTCGTGCACTATCTCGAGCCAAATCCCGGCGCAATCTGGA
CTACAAGGATGTGCTGGACAAGCTGGACCAGTTGGGCATCGCCATACGCG
TGGCCTCGCCCAAACTGGTCATGGAGGAGGCACCCGAATCTTACAAGGAC
GTGACCGATGTGGTCGACACCTGTCACGCAGCTGGCATCAGCAAAAAGTG
CATCAAGATGCGCCCAATTGCAGTTATCAAGGGCTAAAAGCTTTCTAGAC
CAT
BS16425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9987-RA | 1521 | CG9987-PA | 1..1521 | 17..1537 | 7590 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9987-RA | 1742 | CG9987-RA | 129..1649 | 17..1537 | 7590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19430771..19432064 | 17..1310 | 6455 | 99.9 | Plus |
| 2L | 23513712 | 2L | 19432123..19432351 | 1309..1537 | 1145 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3663..3745 | 162..244 | 118 | 60.2 | Plus |
BS16425.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:17 Download gff for
BS16425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 1..1521 | 17..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:33 Download gff for
BS16425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 108..1635 | 10..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:41 Download gff for
BS16425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 129..1647 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:17 Download gff for
BS16425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 108..1635 | 10..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:17 Download gff for
BS16425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9987-RA | 129..1647 | 17..1535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:17 Download gff for
BS16425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19430771..19432063 | 17..1309 | 99 | -> | Plus |
| 2L | 19432124..19432349 | 1310..1535 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:41 Download gff for
BS16425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19430771..19432063 | 17..1309 | 99 | -> | Plus |
| arm_2L | 19432124..19432349 | 1310..1535 | 100 | | Plus |
BS16425.pep Sequence
Translation from 16 to 1536
> BS16425.pep
MVVRPYNDELRYLEKVSDHCWRIKKGFQPNMNVEGCFYVNSRLERLMLEE
LKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNM
AAFDMNDPLSVVSPGGVGFDINCGVRLLRTNLYEKDVQPVKEQLAQSLFD
HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRM
LNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIE
EKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIY
DVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV
LVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKDVL
DKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRP
IAVIKG*
BS16425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9987-PA | 506 | CG9987-PA | 1..506 | 1..506 | 2655 | 100 | Plus |
