Clone Sequence Records
BS16431.3prime Sequence
881 bp (770 high quality bases) assembled on 2007-05-15
> BS16431.3prime
ATGGTCTAGAAAGCTTTCAGTAAACCAGGCGGATGGCCTGCTGTCCGTGG
TAAATATCGCTCCTAACAAGAACTTCATAGTTGCTCAGACGGATCTCTTG
GCCACCGAATGGGATCTGGAGGCATCGGTTGTAGGTCTCAATTACACCGG
GTGTCAAGCTGCCGCAGTAGTGACCCCGTCCAATGTAGAGTGGTGCTCCG
CCAGGTGTCGTTCCGGCCACAACTGCTCCAGGTGGAACGTTTCCGCCGTA
GGATGGCACCCAGTGGTATTTGCCCTTGCCCACCAGCATTTGGTACGATG
GCTCAATGATTTCACGACCCCCGTGGGCTATGTAGCCACATCCCTGGCTG
GGAATGGCCTTGCCAGGAACATGGACACCACGGTAGTAGGCCCGGCAAAC
CAGCAATTGCTCCATGTTGCTGTCATGACCTCCAATCACGGCATCGGGAG
AGTAATAATAGCCCGGTTCGGCTGATACCCAAACGTCATAGTTGTTGCCA
TAGCCGTAGGCGTCATATGCCGAAGGAGCAGCACACTCGGCCGGAGTGTA
GGACGAGCATCCCGCCTCGTAGGGATTATAGGTGGAAGCGGGTGTAAACG
ATGGTGCCACGGGAACGGATACTGCGGTCACCTCTGCGGGAACAAATGAT
GGCGGTGGCGCCACCTCAGCTGGAGTGAACGATGGAGGAGGAGGTGGCAT
GACCAACACACCACCTGCAGGCGGTGGTGGTGGTGGTGGTCGTGGCATGA
CCAGCACTCCTCCCGCCGGCGGTGGTGGGGTTGGACTCGGCATCACCATC
ACACCTCCAACGGGTGGCATGGGATCCGGAGTGGGTGTGTAGGCCGGAGG
CCTGTCAAGAAATGGCATGGCAGCCAATCCG
BS16431.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3884-PA | 1437 | CG3884-RA | 577..1437 | 877..17 | 4255 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-RB | 1796 | CG44251-RB | 630..1491 | 877..16 | 4280 | 99.8 | Minus |
| CG44251-RA | 1860 | CG44251-RA | 694..1555 | 877..16 | 4280 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12948653..12949514 | 16..877 | 4280 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:21:13 has no hits.
BS16431.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:36 Download gff for
BS16431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-PA | 572..1437 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:23 Download gff for
BS16431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 689..1555 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:53 Download gff for
BS16431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 689..1555 | 16..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:53 Download gff for
BS16431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12948653..12949519 | 16..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:23 Download gff for
BS16431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8836158..8837024 | 16..881 | 99 | | Plus |
BS16431.5prime Sequence
856 bp (801 high quality bases) assembled on 2007-05-15
> BS16431.5prime
GAAGTTATCAGTCGACATGGCCTACAAGTGGGTTCAATCCTCGGCCTACT
CCTCCCTTCCCGAGGAGGCAGTGGTGGGCGGCAACGATGAGGACGGCGCC
ATGATATACGTGGGCAGGGCGGAGCACGAGGGCGATATGTTGGTCTGTAA
GGTGGTGCCGAGCAAGCAACTGGGATTCATTTCGCAGCGAGGAGAGGCAC
TGCCCAAGGACATCTTCGAGGTGCTGTGCGGTCAGAATTTGGTATGGATC
AAGTGCTACGATCATGTGATTCCGGAGAATGCTGTACTCTGTGGACGCAC
ATCACTGGATCAGCCGGTGTACATTGGTCGTGGTCATTACGAGGGTCATC
TGATTATCGGCAAAATCTCCTCTGTCCATCGAGCTTTGTTCATCGCCTTT
CGCGGTGCCGAACGTCGTCTGGATTCCTATGAGATTTTGGTGGAGGAGCG
CAGAGTGGTTCCTGGCTGGCAGCTGCCGCCACCACCTCCTCCACTAGAGG
AGCCGGAAAAGTGTCCACTATCGCCGCCGCCACCACCTTCTCCACCGGCA
ATGGCGCCGCCACTGCCGGCCAAACCATATCCATATCCGGATTTGGCTGC
CATGCCATTTCCTGACAGGCCTCCGGCCTACACACCCACTCCGGATCCCA
TGCCACCCGTTGGAGGTGTGATGGTGATGCCGAGTCCAACCCCACCACCG
CCGGCGGGAGGAGTGCTGGTCATGCCACGACCACCACCACCACCACCGCC
TGCAGGTGGTGTGTTGGTCATGCCACCTCCTCCTCCATCGTTCACTCCAG
CTGAGGTGGCGCCACCGCCATCATTTGTTCCCGCAGAGGTGACCGCAGTA
TCCGTT
BS16431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3884-PA | 1437 | CG3884-RA | 1..840 | 17..856 | 4000 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-RA | 1860 | CG44251-RA | 118..957 | 17..856 | 4080 | 99 | Plus |
| CG44251-RB | 1796 | CG44251-RB | 57..893 | 20..856 | 4065 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12949251..12950087 | 856..20 | 4065 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:31:25 has no hits.
BS16431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:49 Download gff for
BS16431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:56 Download gff for
BS16431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 118..957 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:33 Download gff for
BS16431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 118..957 | 17..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:33 Download gff for
BS16431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12949251..12950089 | 16..856 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:56 Download gff for
BS16431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8836756..8837594 | 16..856 | 98 | | Minus |
BS16431.complete Sequence
1469 bp assembled on 2007-05-07
GenBank Submission: FJ638144
> BS16431.complete
GAAGTTATCAGTCGACATGGCCTACAAGTGGGTTCAATCCTCGGCCTACT
CCTCCCTTCCCGAGGAGGCAGTGGTGGGCGGCAACGATGAGGACGGCGCC
ATGATATACGTGGGCAGGGCGGAGCACGAGGGCGATATGTTGGTCTGTAA
GGTGGTGCCGAGCAAGCAACTGGGATTCATTTCGCAGCGAGGAGAGGCAC
TGCCCAAGGACATCTTCGAGGTGCTGTGCGGTCAGAATTTGGTATGGATC
AAGTGCTACGATCATGTGATTCCGGAGAATGCTGTACTCTGTGGACGCAC
ATCACTGGATCAGCCGGTGTACATTGGTCGTGGTCATTACGAGGGTCATC
TGATTATCGGCAAAATCTCCTCTGTCCATCGAGCTTTGTTCATCGCCTTT
CGCGGTGCCGAACGTCGTCTGGATTCCTATGAGATTTTGGTGGAGGAGCG
CAGAGTGGTTCCTGGCTGGCAGCTGCCGCCACCACCTCCTCCACTAGAGG
AGCCGGAAAAGTGTCCACTATCGCCGCCGCCACCACCTTCTCCACCGGCA
ATGGCGCCGCCACTGCCGGCCAAACCATATCCATATCCGGATTTGGCTGC
CATGCCATTTCCTGACAGGCCTCCGGCCTACACACCCACTCCGGATCCCA
TGCCACCCGTTGGAGGTGTGATGGTGATGCCGAGTCCAACCCCACCACCG
CCGGCGGGAGGAGTGCTGGTCATGCCACGACCACCACCACCACCACCGCC
TGCAGGTGGTGTGTTGGTCATGCCACCTCCTCCTCCATCGTTCACTCCAG
CTGAGGTGGCGCCACCGCCATCATTTGTTCCCGCAGAGGTGACCGCAGTA
TCCGTTCCCGTGGCACCATCGTTTACACCCGCTTCCACCTATAATCCCTA
CGAGGCGGGATGCTCGTCCTACACTCCGGCCGAGTGTGCTGCTCCTTCGG
CATATGACGCCTACGGCTATGGCAACAACTATGACGTTTGGGTATCAGCC
GAACCGGGCTATTATTACTCTCCCGATGCCGTGATTGGAGGTCATGACAG
CAACATGGAGCAATTGCTGGTTTGCCGGGCCTACTACCGTGGTGTCCATG
TTCCTGGCAAGGCCATTCCCAGCCAGGGATGTGGCTACATAGCCCACGGG
GGTCGTGAAATCATTGAGCCATCGTACCAAATGCTGGTGGGCAAGGGCAA
ATACCACTGGGTGCCATCCTACGGCGGAAACGTTCCACCTGGAGCAGTTG
TGGCCGGAACGACACCTGGCGGAGCACCACTCTACATTGGACGGGGTCAC
TACTGCGGCAGCTTGACACCCGGTGTAATTGAGACCTACAACCGATGCCT
CCAGATCCCATTCGGTGGCCAAGAGATCCGTCTGAGCAACTATGAAGTTC
TTGTTAGGAGCGATATTTACCACGGACAGCAGGCCATCCGCCTGGTTTAC
TGAAAGCTTTCTAGACCAT
BS16431.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-RA | 1437 | CG44251-PA | 1..1437 | 17..1453 | 7065 | 99.4 | Plus |
| CG44251-RB | 1353 | CG44251-PB | 1..1353 | 101..1453 | 6645 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-RA | 1860 | CG44251-RA | 118..1555 | 17..1454 | 7070 | 99.4 | Plus |
| CG44251-RB | 1796 | CG44251-RB | 57..1491 | 20..1454 | 7055 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12948653..12950087 | 1454..20 | 7055 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:50:18 has no hits.
BS16431.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:18 Download gff for
BS16431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RA | 1..1437 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:35 Download gff for
BS16431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RA | 111..1547 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:00 Download gff for
BS16431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 118..1553 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:18 Download gff for
BS16431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RA | 111..1547 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:19 Download gff for
BS16431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 118..1553 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:19 Download gff for
BS16431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12948655..12950088 | 17..1452 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:00 Download gff for
BS16431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8836160..8837593 | 17..1452 | 99 | | Minus |
BS16431.pep Sequence
Translation from 16 to 1452
> BS16431.pep
MAYKWVQSSAYSSLPEEAVVGGNDEDGAMIYVGRAEHEGDMLVCKVVPSK
QLGFISQRGEALPKDIFEVLCGQNLVWIKCYDHVIPENAVLCGRTSLDQP
VYIGRGHYEGHLIIGKISSVHRALFIAFRGAERRLDSYEILVEERRVVPG
WQLPPPPPPLEEPEKCPLSPPPPPSPPAMAPPLPAKPYPYPDLAAMPFPD
RPPAYTPTPDPMPPVGGVMVMPSPTPPPPAGGVLVMPRPPPPPPPAGGVL
VMPPPPPSFTPAEVAPPPSFVPAEVTAVSVPVAPSFTPASTYNPYEAGCS
SYTPAECAAPSAYDAYGYGNNYDVWVSAEPGYYYSPDAVIGGHDSNMEQL
LVCRAYYRGVHVPGKAIPSQGCGYIAHGGREIIEPSYQMLVGKGKYHWVP
SYGGNVPPGAVVAGTTPGGAPLYIGRGHYCGSLTPGVIETYNRCLQIPFG
GQEIRLSNYEVLVRSDIYHGQQAIRLVY*
BS16431.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-PA | 478 | CG44251-PA | 1..478 | 1..478 | 2636 | 100 | Plus |
| CG44251-PB | 450 | CG44251-PB | 1..450 | 29..478 | 2490 | 100 | Plus |
| CG44250-PB | 286 | CG44250-PB | 3..143 | 323..464 | 391 | 50 | Plus |
| CG44250-PC | 297 | CG44250-PC | 14..154 | 323..464 | 391 | 50 | Plus |
| CG13321-PB | 286 | CG13321-PB | 146..285 | 323..464 | 358 | 47.2 | Plus |
| CG44250-PB | 286 | CG44250-PB | 146..285 | 322..464 | 354 | 49 | Plus |
| CG44250-PC | 297 | CG44250-PC | 157..296 | 322..464 | 354 | 49 | Plus |
| CG44250-PB | 286 | CG44250-PB | 5..159 | 5..159 | 338 | 43.2 | Plus |
| CG44250-PC | 297 | CG44250-PC | 16..170 | 5..159 | 338 | 43.2 | Plus |
| CG44250-PB | 286 | CG44250-PB | 149..286 | 5..144 | 296 | 46.4 | Plus |
| CG44250-PC | 297 | CG44250-PC | 160..297 | 5..144 | 296 | 46.4 | Plus |
| CG44251-PB | 450 | CG44251-PB | 297..435 | 5..142 | 222 | 36 | Plus |
| CG44250-PB | 286 | CG44250-PB | 53..213 | 312..462 | 212 | 34.6 | Plus |
| CG44250-PC | 297 | CG44250-PC | 64..224 | 312..462 | 212 | 34.6 | Plus |
| CG44250-PB | 286 | CG44250-PB | 75..213 | 3..141 | 191 | 33.6 | Plus |
| CG44250-PC | 297 | CG44250-PC | 86..224 | 3..141 | 191 | 33.6 | Plus |
