Clone Sequence Records
BS16432.3prime Sequence
870 bp (729 high quality bases) assembled on 2007-05-15
> BS16432.3prime
ATGGTCTAGAAAGCTTCTAGTAACGTCTATTGCCGCCTCCCATATTTCCA
CCCTGGCCACCACCTCCGGTGTTGTAGTTGTTGCCAGCAAAGCCTTGACC
TCCACCCTGGTTACCCTTGTTGAATCCTCCACCACCACCTCCTTGACTGT
AAGGAGCTGGACGGTTGTTGCCAAAGTTGCTGTTGCGCTGTGGACCGCCG
CCGTAGCTCTGCTGGTATTCATTTCCGAAGCCACCGCCACCACCACCTCC
ACCACCGTTACCGCCCCAGCTGCCATTGCTGTTTCCGCCGCCGTAGCCGC
CGCCACCACCACCGTTCCAGCCGCCGTTGCCGCCACCCTGGTTATTCCAT
GGACCACCTCCGCTTCCGCCTTGCTGATTCCAACCGCCAGAGCCGCCGCC
CTGACCGCCTCCAAAGTTACCGCCGCTGTTGCCGAATCCTCCGCCGCCGC
CAGCTCCGCCCCAGTTGCCCCCACCGTTCTGTCTGTTCTGGCCTCCCCAG
CCACCGCCTCCCTGGCCGCGGTCACCCTGACCACCGCGACCGCCAGCTCG
AGGACCTCCGCGTCCGCCACCTCCGCCCTGTCGATCCATATCCTGCTTGG
CAATAGCCTTCTTCACGTCCAGGGTCTTGTTCTTGATGGAGTGGGTCTTC
TGAAGGATGATTTTGTCAACGGGATCGTAGTCATCGAACTCAATGAAGGC
GAAGCCGCGCTTCTTGCCGGTGTCCTTGTCGGAAACAATGTTCACGCTCA
CGATCTGGCCAAAGTCCTTGAAGTACTCGCGCAGGCACTCTTCATCGTGA
TCGTCTCGAAGCCCGCCCACAAAGAGCTTCTTTACCGTGGCTCCCGCATT
CGGGGAATCGATCTCCTGGC
BS16432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12749-PA | 1158 | Hrb87F-RA | 305..1158 | 870..17 | 4270 | 100 | Minus |
| CG12749-PB | 978 | Hrb87F-RB | 305..939 | 870..236 | 3175 | 100 | Minus |
| CG12749-PB | 978 | Hrb87F-RB | 931..978 | 64..17 | 240 | 100 | Minus |
| CG9983-PE | 1083 | Hrb98DE-RE | 451..519 | 730..662 | 145 | 88.4 | Minus |
| CG9983-PD | 1086 | Hrb98DE-RD | 454..522 | 730..662 | 145 | 88.4 | Minus |
| CG9983-PF | 1086 | Hrb98DE-RF | 454..522 | 730..662 | 145 | 88.4 | Minus |
| CG9983-PA | 1095 | Hrb98DE-RA | 463..531 | 730..662 | 145 | 88.4 | Minus |
| CG9983-PB | 1098 | Hrb98DE-RB | 466..534 | 730..662 | 145 | 88.4 | Minus |
| CG9983-PC | 1098 | Hrb98DE-RC | 466..534 | 730..662 | 145 | 88.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 2759 | CG12749-RE | 449..1303 | 870..16 | 4275 | 100 | Minus |
| Hrb87F-RD | 1587 | CG12749-RD | 449..1303 | 870..16 | 4275 | 100 | Minus |
| Hrb87F-RC | 1810 | CG12749-RC | 449..1303 | 870..16 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13658634..13659392 | 112..870 | 3795 | 100 | Plus |
| 3R | 32079331 | 3R | 13658466..13658565 | 16..115 | 500 | 100 | Plus |
| 3R | 32079331 | 3R | 28600982..28601188 | 868..662 | 405 | 79.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:21:36 has no hits.
BS16432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:42 Download gff for
BS16432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12749-PA | 305..1158 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:28 Download gff for
BS16432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 449..1303 | 16..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:58 Download gff for
BS16432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 449..1303 | 16..870 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:58 Download gff for
BS16432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13658466..13658564 | 16..114 | 100 | <- | Plus |
| 3R | 13658637..13659392 | 115..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:28 Download gff for
BS16432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9484188..9484286 | 16..114 | 100 | <- | Plus |
| arm_3R | 9484359..9485114 | 115..870 | 100 | | Plus |
BS16432.5prime Sequence
750 bp (747 high quality bases) assembled on 2007-05-15
> BS16432.5prime
GAAGTTATCAGTCGACATGGCGGAACAAAACGATTCCAACGGAAACTACG
ACGATGGTGAAGAGATCACCGAGCCAGAGCAGCTGCGCAAACTGTTCATC
GGCGGACTGGACTACCGCACCACAGATGATGGCCTGAAGGCTCACTTCGA
GAAGTGGGGCAACATTGTCGACGTGGTGGTGATGAAGGATCCCAAGACGA
AGCGCTCTCGCGGCTTCGGTTTCATCACGTACTCCCAGTCGTACATGATC
GACAATGCGCAGAATGCCAGGCCACACAAGATCGATGGACGCACCGTGGA
GCCCAAGAGGGCTGTGCCACGCCAGGAGATCGATTCCCCGAATGCGGGAG
CCACGGTAAAGAAGCTCTTTGTGGGCGGGCTTCGAGACGATCACGATGAA
GAGTGCCTGCGCGAGTACTTCAAGGACTTTGGCCAGATCGTGAGCGTGAA
CATTGTTTCCGACAAGGACACCGGCAAGAAGCGCGGCTTCGCCTTCATTG
AGTTCGATGACTACGATCCCGTTGACAAAATCATCCTTCAGAAGACCCAC
TCCATCAAGAACAAGACCCTGGACGTGAAGAAGGCTATTGCCAAGCAGGA
TATGGATCGACAGGGCGGAGGTGGCGGACGCGGAGGTCCTCGAGCTGGCG
GTCGCGGTGGTCAGGGTGACCGCGGCCAGGGAGGCGGTGGCTGGGGAGGC
CAGAACAGACAGAACGGTGGGGGCAACTGGGGCGGAGCTGGCGGCGGCGG
BS16432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12749-PA | 1158 | Hrb87F-RA | 1..734 | 17..750 | 3670 | 100 | Plus |
| CG12749-PB | 978 | Hrb87F-RB | 1..734 | 17..750 | 3670 | 100 | Plus |
| CG9983-PE | 1083 | Hrb98DE-RE | 127..182 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PD | 1086 | Hrb98DE-RD | 130..185 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PF | 1086 | Hrb98DE-RF | 130..185 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PA | 1095 | Hrb98DE-RA | 139..194 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PB | 1098 | Hrb98DE-RB | 142..197 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PC | 1098 | Hrb98DE-RC | 142..197 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PE | 1083 | Hrb98DE-RE | 451..519 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PD | 1086 | Hrb98DE-RD | 454..522 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PF | 1086 | Hrb98DE-RF | 454..522 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PA | 1095 | Hrb98DE-RA | 463..531 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PB | 1098 | Hrb98DE-RB | 466..534 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PC | 1098 | Hrb98DE-RC | 466..534 | 461..529 | 145 | 88.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 2759 | CG12749-RE | 145..878 | 17..750 | 3670 | 100 | Plus |
| Hrb87F-RD | 1587 | CG12749-RD | 145..878 | 17..750 | 3670 | 100 | Plus |
| Hrb87F-RC | 1810 | CG12749-RC | 145..878 | 17..750 | 3670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13658963..13659650 | 750..63 | 3440 | 100 | Minus |
| 3R | 32079331 | 3R | 28600724..28601188 | 65..529 | 855 | 78.9 | Plus |
| 3R | 32079331 | 3R | 13660340..13660387 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:24:58 has no hits.
BS16432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:38:54 Download gff for
BS16432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12749-PA | 1..734 | 17..750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:08 Download gff for
BS16432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 140..878 | 10..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:23 Download gff for
BS16432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 140..878 | 10..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:23 Download gff for
BS16432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13658963..13659648 | 65..750 | 100 | <- | Minus |
| 3R | 13660340..13660392 | 10..64 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:08 Download gff for
BS16432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9484685..9485370 | 65..750 | 100 | <- | Minus |
| arm_3R | 9486062..9486114 | 10..64 | 94 | | Minus |
BS16432.complete Sequence
1190 bp assembled on 2007-05-07
GenBank Submission: FJ638145
> BS16432.complete
GAAGTTATCAGTCGACATGGCGGAACAAAACGATTCCAACGGAAACTACG
ACGATGGTGAAGAGATCACCGAGCCAGAGCAGCTGCGCAAACTGTTCATC
GGCGGACTGGACTACCGCACCACAGATGATGGCCTGAAGGCTCACTTCGA
GAAGTGGGGCAACATTGTCGACGTGGTGGTGATGAAGGATCCCAAGACGA
AGCGCTCTCGCGGCTTCGGTTTCATCACGTACTCCCAGTCGTACATGATC
GACAATGCGCAGAATGCCAGGCCACACAAGATCGATGGACGCACCGTGGA
GCCCAAGAGGGCTGTGCCACGCCAGGAGATCGATTCCCCGAATGCGGGAG
CCACGGTAAAGAAGCTCTTTGTGGGCGGGCTTCGAGACGATCACGATGAA
GAGTGCCTGCGCGAGTACTTCAAGGACTTTGGCCAGATCGTGAGCGTGAA
CATTGTTTCCGACAAGGACACCGGCAAGAAGCGCGGCTTCGCCTTCATTG
AGTTCGATGACTACGATCCCGTTGACAAAATCATCCTTCAGAAGACCCAC
TCCATCAAGAACAAGACCCTGGACGTGAAGAAGGCTATTGCCAAGCAGGA
TATGGATCGACAGGGCGGAGGTGGCGGACGCGGAGGTCCTCGAGCTGGCG
GTCGCGGTGGTCAGGGTGACCGCGGCCAGGGAGGCGGTGGCTGGGGAGGC
CAGAACAGACAGAACGGTGGGGGCAACTGGGGCGGAGCTGGCGGCGGCGG
AGGATTCGGCAACAGCGGCGGTAACTTTGGAGGCGGTCAGGGCGGCGGCT
CTGGCGGTTGGAATCAGCAAGGCGGAAGCGGAGGTGGTCCATGGAATAAC
CAGGGTGGCGGCAACGGCGGCTGGAACGGTGGTGGTGGCGGCGGCTACGG
CGGCGGAAACAGCAATGGCAGCTGGGGCGGTAACGGTGGTGGAGGTGGTG
GTGGCGGTGGCTTCGGAAATGAATACCAGCAGAGCTACGGCGGCGGTCCA
CAGCGCAACAGCAACTTTGGCAACAACCGTCCAGCTCCTTACAGTCAAGG
AGGTGGTGGTGGAGGATTCAACAAGGGTAACCAGGGTGGAGGTCAAGGCT
TTGCTGGCAACAACTACAACACCGGAGGTGGTGGCCAGGGTGGAAATATG
GGAGGCGGCAATAGACGTTACTAGAAGCTTTCTAGACCAT
BS16432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 1158 | CG12749-PE | 1..1158 | 17..1174 | 5790 | 100 | Plus |
| Hrb87F-RD | 1158 | CG12749-PD | 1..1158 | 17..1174 | 5790 | 100 | Plus |
| Hrb87F-RC | 1158 | CG12749-PC | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 2759 | CG12749-RE | 145..1303 | 17..1175 | 5795 | 100 | Plus |
| Hrb87F-RD | 1587 | CG12749-RD | 145..1303 | 17..1175 | 5795 | 100 | Plus |
| Hrb87F-RC | 1810 | CG12749-RC | 145..1303 | 17..1175 | 5795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13658634..13659650 | 1079..63 | 5085 | 100 | Minus |
| 3R | 32079331 | 3R | 28600724..28601188 | 65..529 | 855 | 78.9 | Plus |
| 3R | 32079331 | 3R | 13658466..13658565 | 1175..1076 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 13660340..13660387 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:08:16 has no hits.
BS16432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:05 Download gff for
BS16432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RA | 1..1158 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:17 Download gff for
BS16432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RA | 128..1291 | 10..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:43 Download gff for
BS16432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 145..1302 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:05 Download gff for
BS16432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RA | 128..1291 | 10..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:38 Download gff for
BS16432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 145..1302 | 17..1174 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:38 Download gff for
BS16432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13658467..13658564 | 1077..1174 | 100 | <- | Minus |
| 3R | 13658637..13659648 | 65..1076 | 100 | <- | Minus |
| 3R | 13660340..13660387 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:43 Download gff for
BS16432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9484189..9484286 | 1077..1174 | 100 | <- | Minus |
| arm_3R | 9484359..9485370 | 65..1076 | 100 | <- | Minus |
| arm_3R | 9486062..9486109 | 17..64 | 100 | | Minus |
BS16432.pep Sequence
Translation from 16 to 1173
> BS16432.pep
MAEQNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNI
VDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAV
PRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDK
DTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQG
GGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNS
GGNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGGGNSN
GSWGGNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYSQGGGGGG
FNKGNQGGGQGFAGNNYNTGGGGQGGNMGGGNRRY*
BS16432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-PE | 385 | CG12749-PE | 1..385 | 1..385 | 2152 | 100 | Plus |
| Hrb87F-PD | 385 | CG12749-PD | 1..385 | 1..385 | 2152 | 100 | Plus |
| Hrb87F-PC | 385 | CG12749-PC | 1..385 | 1..385 | 2152 | 100 | Plus |
| Hrb87F-PA | 385 | CG12749-PA | 1..385 | 1..385 | 2152 | 100 | Plus |
| Hrb98DE-PF | 361 | CG9983-PF | 6..361 | 3..385 | 1194 | 63.4 | Plus |
