Clone Sequence Records
BS16434.3prime Sequence
857 bp (752 high quality bases) assembled on 2007-05-15
> BS16434.3prime
ATGGTCTAGAAAGCTTCTACACATCGTACAATTTCATGTTCTCGATCTCG
TCCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGTCCAG
GCACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGG
CGAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAA
ATGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTT
GCGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTG
ATATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGC
GAATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGAT
CATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCG
ATACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGA
AACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCAC
TTCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTA
GATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGC
ATAACACAGCGCAAACGACTGCGAAGCGTTAGGGCAGCGTGACCCTCCAG
GACGCTGGTCAGCTGCTCCTCAAAGTTATCGAAACGGAAGGGTGTGAGAA
AGCCGAGGGAGCCCAAATGGAAGGCCATGACGGGGGGCACAGATTGCTGG
AAGAGCAGCGAAGCATACAGCAGGGTGCCATCGCCACCCAGGCAAACTAT
AAAGTCT
BS16434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-PC | 1128 | CG33156-RC | 288..1128 | 857..17 | 4205 | 100 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 525..1365 | 857..17 | 4205 | 100 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 633..1473 | 857..17 | 4205 | 100 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 522..1362 | 857..17 | 4205 | 100 | Minus |
| CG6145-PA | 1563 | CG6145-RA | 1099..1281 | 481..299 | 465 | 90.1 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 1183..1365 | 481..299 | 465 | 90.1 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 799..981 | 481..299 | 465 | 90.1 | Minus |
| CG6145-PA | 1563 | CG6145-RA | 1431..1496 | 149..84 | 155 | 89.3 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 1515..1580 | 149..84 | 155 | 89.3 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 1131..1196 | 149..84 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1795 | CG33156-RF | 592..1432 | 857..17 | 4205 | 100 | Minus |
| CG33156-RB | 1824 | CG33156-RB | 621..1461 | 857..17 | 4205 | 100 | Minus |
| CG33156-RE | 2330 | CG33156-RE | 1127..1967 | 857..17 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548954..13549506 | 305..857 | 2765 | 100 | Plus |
| 2R | 25286936 | 2R | 13548607..13548896 | 17..306 | 1450 | 100 | Plus |
| 2R | 25286936 | 2R | 13538198..13538468 | 305..575 | 770 | 85.6 | Plus |
| 2R | 25286936 | 2R | 13537799..13538051 | 54..306 | 545 | 81 | Plus |
| 2R | 25286936 | 2R | 13538625..13538824 | 657..856 | 490 | 83 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:38:04 has no hits.
BS16434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:51 Download gff for
BS16434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-PE | 633..1473 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:14 Download gff for
BS16434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 1127..1970 | 13..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:49 Download gff for
BS16434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 1127..1970 | 13..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:49 Download gff for
BS16434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548604..13548894 | 13..304 | 99 | <- | Plus |
| 2R | 13548954..13549506 | 305..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:14 Download gff for
BS16434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436109..9436399 | 13..304 | 99 | <- | Plus |
| arm_2R | 9436459..9437011 | 305..857 | 100 | | Plus |
BS16434.5prime Sequence
833 bp (819 high quality bases) assembled on 2007-05-15
> BS16434.5prime
GAAGTTATCAGTCGACATGAAAAACTCCGCCATGGTGATGCAGATCCAGG
ATCCGGCTAGTCAACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTC
GTGATCAAGAAGGTCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCT
GGTGGACTGGCTGCTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGG
CCGTGCTGGAGGATGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATT
CGGGATAAGCTAGTGACTTTCAAAGATGGCCGAGATGATCTGACCGATCG
CATAGACTTTATAGTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTT
CGCTGCTCTTCCAGCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGC
TCCCTCGGCTTTCTCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCT
GACCAGCGTCCTGGAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGC
GCTGTGTTATGCATCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTG
GAGGCAGATCTAGATGGTGAGGCGCGACCTGCAGCCAACAGCATACTGGT
GCTCAACGAAGTGGTCATTGATCGTGGTCCATCGCCGTATCTGAGCAATA
TTGATCTGTTTCTGGACGGAAAGTATATCACGTCGGTGCAGGGCGACGGT
CTGATCGTATCGACGCCCACGGGAAGCACGGCATATGCGGCGGCGGCCGG
TGCGTCCATGATCCATCCCTCCGTGCCGGCGATTATGGTGACTCCCATCT
GCCCGCATTCGCTTAGCTTCCGACCCATTGTGG
BS16434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-PA | 1365 | CG33156-RA | 237..1054 | 16..833 | 4090 | 100 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 345..1162 | 16..833 | 4090 | 100 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 234..1051 | 16..833 | 4090 | 100 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 1099..1252 | 680..833 | 395 | 90.2 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 1183..1336 | 680..833 | 395 | 90.2 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 799..952 | 680..833 | 395 | 90.2 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 301..392 | 17..108 | 260 | 91.3 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 385..476 | 17..108 | 260 | 91.3 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 1..92 | 17..108 | 260 | 91.3 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 601..689 | 257..345 | 195 | 88.7 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 685..773 | 257..345 | 195 | 88.7 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 301..389 | 257..345 | 195 | 88.7 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 430..485 | 149..204 | 155 | 91 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 514..569 | 149..204 | 155 | 91 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 130..185 | 149..204 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1795 | CG33156-RF | 304..1121 | 16..833 | 4090 | 100 | Plus |
| CG33156-RB | 1824 | CG33156-RB | 333..1150 | 16..833 | 4090 | 100 | Plus |
| CG33156-RE | 2330 | CG33156-RE | 839..1656 | 16..833 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548977..13549536 | 833..274 | 2800 | 100 | Minus |
| 2R | 25286936 | 2R | 13549599..13549856 | 273..16 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 13538221..13538468 | 833..586 | 700 | 85.5 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 504..274 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13539104..13539288 | 204..17 | 440 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:30:48 has no hits.
BS16434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:12 Download gff for
BS16434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-PE | 338..1162 | 11..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:07 Download gff for
BS16434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 832..1656 | 11..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:07 Download gff for
BS16434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 832..1656 | 11..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:07 Download gff for
BS16434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548977..13549536 | 274..833 | 100 | <- | Minus |
| 2R | 13549599..13549863 | 11..273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:07 Download gff for
BS16434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436482..9437041 | 274..833 | 100 | <- | Minus |
| arm_2R | 9437104..9437368 | 11..273 | 99 | | Minus |
BS16434.complete Sequence
1160 bp assembled on 2007-05-07
GenBank Submission: FJ638146
> BS16434.complete
GAAGTTATCAGTCGACATGAAAAACTCCGCCATGGTGATGCAGATCCAGG
ATCCGGCTAGTCAACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTC
GTGATCAAGAAGGTCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCT
GGTGGACTGGCTGCTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGG
CCGTGCTGGAGGATGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATT
CGGGATAAGCTAGTGACTTTCAAAGATGGCCGAGATGATCTGACCGATCG
CATAGACTTTATAGTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTT
CGCTGCTCTTCCAGCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGC
TCCCTCGGCTTTCTCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCT
GACCAGCGTCCTGGAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGC
GCTGTGTTATGCATCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTG
GAGGCAGATCTAGATGGTGAGGCGCGACCTGCAGCCAACAGCATACTGGT
GCTCAACGAAGTGGTCATTGATCGTGGTCCATCGCCGTATCTGAGCAATA
TTGATCTGTTTCTGGACGGAAAGTATATCACGTCGGTGCAGGGCGACGGT
CTGATCGTATCGACGCCCACGGGAAGCACGGCATATGCGGCGGCGGCCGG
TGCGTCCATGATCCATCCCTCCGTGCCGGCGATTATGGTGACTCCCATCT
GCCCGCATTCGCTTAGCTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAG
CTGAAGATATCAGTATCCCCCGAGAGCCGCAACACATCGTGGGTTAGCTT
CGATGGACGCAACAGGCAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGA
CCACCTCCATTTATCCCGTGCCATGCATCTGCGCCCAGGATCAGATATCC
GACTGGTTCGCCTCCCTAGCCGACGGACTGCACTGGAATGTGCGCAAGCG
ACAGAAGTGCCTGGACGAGCTGTCGGATCTGACGGCATCCGGATCGGAGG
ATACGCTGGACGAGATCGAGAACATGAAATTGTACGATGTGTAGAAGCTT
TCTAGACCAT
BS16434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1353 | CG33156-PF | 225..1353 | 16..1144 | 5645 | 100 | Plus |
| CG33156-RB | 1362 | CG33156-PB | 234..1362 | 16..1144 | 5645 | 100 | Plus |
| CG33156-RE | 1473 | CG33156-PE | 345..1473 | 16..1144 | 5645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1795 | CG33156-RF | 304..1432 | 16..1144 | 5645 | 100 | Plus |
| CG33156-RB | 1824 | CG33156-RB | 333..1461 | 16..1144 | 5645 | 100 | Plus |
| CG33156-RE | 2330 | CG33156-RE | 839..1967 | 16..1144 | 5645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548954..13549536 | 856..274 | 2915 | 100 | Minus |
| 2R | 25286936 | 2R | 13548607..13548896 | 1144..855 | 1450 | 100 | Minus |
| 2R | 25286936 | 2R | 13549599..13549856 | 273..16 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 13538198..13538468 | 856..586 | 770 | 85.6 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 504..274 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13537799..13538051 | 1107..855 | 545 | 81 | Minus |
| 2R | 25286936 | 2R | 13539104..13539288 | 204..17 | 440 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:44 has no hits.
BS16434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:06 Download gff for
BS16434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 227..1362 | 11..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:18 Download gff for
BS16434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 829..1967 | 11..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:43 Download gff for
BS16434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 840..1967 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:07 Download gff for
BS16434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 829..1967 | 11..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:59 Download gff for
BS16434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 840..1967 | 17..1144 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:59 Download gff for
BS16434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13549599..13549855 | 17..273 | 100 | | Minus |
| 2R | 13548607..13548894 | 857..1144 | 100 | <- | Minus |
| 2R | 13548954..13549536 | 274..856 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:43 Download gff for
BS16434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436112..9436399 | 857..1144 | 100 | <- | Minus |
| arm_2R | 9436459..9437041 | 274..856 | 100 | <- | Minus |
| arm_2R | 9437104..9437360 | 17..273 | 100 | | Minus |
BS16434.pep Sequence
Translation from 16 to 1143
> BS16434.pep
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKVSDASVLAPFVYLVDWLL
QEKNMVVWVESAVLEDVQLNENVRFKAIRDKLVTFKDGRDDLTDRIDFIV
CLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFRFDNFEEQLTSVLE
GHAALTLRSRLRCVMHRRSDRKHEAKTLEADLDGEARPAANSILVLNEVV
IDRGPSPYLSNIDLFLDGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIH
PSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPESRNTSWVSFDGRNR
QELFHGDSLRVTTSIYPVPCICAQDQISDWFASLADGLHWNVRKRQKCLD
ELSDLTASGSEDTLDEIENMKLYDV*
BS16434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-PC | 375 | CG33156-PC | 1..375 | 1..375 | 1933 | 100 | Plus |
| CG33156-PF | 450 | CG33156-PF | 76..450 | 1..375 | 1933 | 100 | Plus |
| CG33156-PB | 453 | CG33156-PB | 79..453 | 1..375 | 1933 | 100 | Plus |
| CG33156-PA | 454 | CG33156-PA | 80..454 | 1..375 | 1933 | 100 | Plus |
| CG33156-PE | 490 | CG33156-PE | 116..490 | 1..375 | 1933 | 100 | Plus |
