Clone Sequence Records
BS16435.3prime Sequence
911 bp (804 high quality bases) assembled on 2007-05-15
> BS16435.3prime
ATGGTCTAGAAAGCTTTTAATCCCTTGGAGTAATCTTAACCCGTAGGCCG
TCCTTGGGCCGCAGAATGAGCTCGCCCAGCAGCGTGAGATCCTCCCGGCG
ATCCACAGCCTCGATTTTGTACTTCCTCAAAACCGTGGAAATCACGGCCT
TCTCCTCCAGAATGGCGAACTTCTGGCCAATGCAGTTACGCGGTCCTGCG
CTAAAGGGTATATAGGCGAAGGGATGGCGTCCGGCGCAGTTTTCCGGCAG
GAAATTGTCCGGATTGAACTGCTCCGGCTTGGGGAAGACGCGCGGATTGC
GGTGCAGGGCGTAGGTCATAATGATGGCCTGAGTTCCGGCGGGCACGATT
TTTCCACCAATGTTCACATCCTCGCCCACCATCCTAGCCATCATTGGGAC
ACTGGGAAACAGGCGCAGCGAGTCCTTGATGCAGCACTCCAGGTATCGCA
TATCCATAAGGTTCTTCATGGTGGCCGGCGTCTCCTTGTCATCGCCGAAG
ATAGAGTCCAGTTCCTCCACCACGCGCTCCTGGTACTCTGGGTGGCAGCC
CAGCAAAAATAGTGTCCAGGAAATGGCCGCAGAGGTGGTGTCGTGGCCCT
CGAACATAAAGGTGTCTACCTCCTCGCGAATGTCCTCATTAGAAAGAACA
GTTCCTTCCTTAGAGGCATCGATGAGAAGGTCCAGGAAGGCCAGGCGCTT
CTTCTTTCCCACGTCATCATAGGCATCGGGGGCGTTATTATTATTGTTGT
TATTGTTCTCCTGGAGAATGGCCAACTCAGCCTTTCGCTCGCGGATCACC
ATGTTGGAAAATCCATGCAGGGTGTTTATGTAGCTCTGGTGGAGCTTGTA
CTCCGCGGTCAGGCTGAAAATGAAGTCGCTCTGCAGCCAAATCTTTCGCT
GCCGACTCTGT
BS16435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1438-PA | 1608 | Cyp4c3-RA | 730..1608 | 895..17 | 4395 | 100 | Minus |
CG3656-PB | 1512 | Cyp4d1-RB | 885..945 | 635..575 | 205 | 93.4 | Minus |
CG3656-PA | 1539 | Cyp4d1-RA | 912..972 | 635..575 | 205 | 93.4 | Minus |
CG16761-PA | 1533 | Cyp4d20-RA | 919..963 | 628..584 | 150 | 93.3 | Minus |
CG3656-PB | 1512 | Cyp4d1-RB | 1336..1368 | 187..155 | 140 | 96.9 | Minus |
CG3656-PA | 1539 | Cyp4d1-RA | 1363..1395 | 187..155 | 140 | 96.9 | Minus |
CG3540-PA | 1524 | Cyp4d14-RA | 910..947 | 634..597 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-RA | 1906 | CG1438-RA | 847..1741 | 911..17 | 4430 | 99.8 | Minus |
Cyp4d1-RA | 1685 | CG3656-RA | 988..1048 | 635..575 | 245 | 93.4 | Minus |
Cyp4d1-RB | 1644 | CG3656-RB | 947..1007 | 635..575 | 245 | 93.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30900178..30900523 | 362..17 | 1715 | 99.7 | Minus |
3R | 32079331 | 3R | 30899846..30900127 | 637..356 | 1410 | 100 | Minus |
3R | 32079331 | 3R | 30899511..30899785 | 911..637 | 1330 | 98.9 | Minus |
X | 23542271 | X | 2159842..2159902 | 575..635 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 2476973..2477028 | 584..639 | 190 | 89.3 | Plus |
Blast to na_te.dros performed 2015-02-13 06:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker | 7256 | Stalker STALKER 7256bp | 2761..2791 | 764..734 | 119 | 87.1 | Minus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2874..2897 | 757..734 | 111 | 95.8 | Minus |
BS16435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:59 Download gff for
BS16435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1438-PA | 714..1608 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:58 Download gff for
BS16435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 847..1747 | 12..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:14 Download gff for
BS16435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 847..1747 | 12..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:14 Download gff for
BS16435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30900183..30900529 | 12..357 | 99 | | Minus |
3R | 30899511..30899784 | 638..911 | 99 | -> | Minus |
3R | 30899846..30900125 | 358..637 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:58 Download gff for
BS16435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26725233..26725506 | 638..911 | 99 | -> | Minus |
arm_3R | 26725568..26725847 | 358..637 | 100 | -> | Minus |
arm_3R | 26725905..26726251 | 12..357 | 99 | | Minus |
BS16435.5prime Sequence
873 bp (745 high quality bases) assembled on 2007-05-15
> BS16435.5prime
GAAGTTATCAGTCGACATGTCCTCGAAAGTGATAACCTCGTTAATGGCCG
AGAGCATACTGCTCTCAAAAGTGGGCCAAGTGATATCCGGCTACTCGCCG
ATCACGGTTTTTCTCCTTGGATCCATTCTAATTTTCCTCGTAGTCTACAA
CAAGCGCCGATCCCGACTGGTGAAGTACATCGAAAAGATCCCGGGACCTG
CGGCCATGCCCTTCCTGGGCAACGCCATCGAAATGAATGTGGATCACGAC
GAGCTCTTTAACCGCGTCATCGGCATGCAAAAGTTGTGGGGCACGCGTAT
CGGAATCAATCGCGTTTGGCAGGGAACAGCTCCAAGGGTGCTCCTCTTCG
AGCCTGAGACCGTGGAGCCCATACTGAACAGCCAGAAGTTTGTGAACAAG
AGCCACGACTACGACTATCTGCATCCTTGGTTGGGAGAGGGTCTGCTTAC
CAGCACAGATCGCAAGTGGCACTCCCGCAGGAAGATCCTCACACCTGCCT
TCCACTTCAAAATCTTGGACGATTTCATCGACGTTTTCAATGAGCAGAGC
GCAGTCTTGGCCAGAAAATTGGCGGTGGAGGTGGGCAGCGAGGCGTTCAA
CCTGTTCCCCTACGTCACGCTCTGCACCTTGGACATTGTTTGTGAAACCG
CCATGGGTCGCAGAATTTACGCCCAGAGCAATAGTGAATCGGAGTATGTG
AAGGCGGTCTATGGCATTGGATCGATTGTACAGAGTCGGCAGGCGAAGAT
TTGGCTGCAGAGCGACTTCATTTTCAGCCTGACCGCGGAAGTACAGCTCC
ACCAGAGCTACATAAACACCCTGCATGGATTTTTCCACATGGTGATCCGC
GAGCGAAAGGCTGAATGGGCCAT
BS16435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1438-PA | 1608 | Cyp4c3-RA | 1..773 | 17..789 | 3865 | 100 | Plus |
CG1438-PA | 1608 | Cyp4c3-RA | 779..848 | 795..864 | 300 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-RA | 1906 | CG1438-RA | 134..990 | 17..873 | 4180 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30894171..30894405 | 17..251 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 30897861..30898022 | 483..644 | 810 | 100 | Plus |
3R | 32079331 | 3R | 30899495..30899654 | 714..873 | 665 | 94.4 | Plus |
3R | 32079331 | 3R | 30897678..30897796 | 366..484 | 595 | 100 | Plus |
3R | 32079331 | 3R | 30897502..30897618 | 251..367 | 585 | 100 | Plus |
3R | 32079331 | 3R | 30898111..30898181 | 644..714 | 355 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1490..1528 | 503..541 | 114 | 76.9 | Plus |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 1635..1670 | 506..541 | 108 | 77.8 | Plus |
BS16435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:22 Download gff for
BS16435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1438-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:11 Download gff for
BS16435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 125..990 | 8..873 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:53 Download gff for
BS16435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 125..990 | 8..873 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:53 Download gff for
BS16435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30894162..30894405 | 8..251 | 98 | -> | Plus |
3R | 30897503..30897618 | 252..367 | 100 | -> | Plus |
3R | 30897680..30897796 | 368..484 | 100 | -> | Plus |
3R | 30897863..30898022 | 485..644 | 100 | -> | Plus |
3R | 30898112..30898181 | 645..714 | 100 | -> | Plus |
3R | 30899496..30899654 | 715..873 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:11 Download gff for
BS16435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26723225..26723340 | 252..367 | 100 | -> | Plus |
arm_3R | 26723402..26723518 | 368..484 | 100 | -> | Plus |
arm_3R | 26719884..26720127 | 8..251 | 98 | -> | Plus |
arm_3R | 26723585..26723744 | 485..644 | 100 | -> | Plus |
arm_3R | 26723834..26723903 | 645..714 | 100 | -> | Plus |
arm_3R | 26725218..26725376 | 715..873 | 96 | | Plus |
BS16435.complete Sequence
1640 bp assembled on 2007-05-07
GenBank Submission: FJ638147
> BS16435.complete
GAAGTTATCAGTCGACATGTCCTCGAAAGTGATAACCTCGTTAATGGCCG
AGAGCATACTGCTCTCAAAAGTGGGCCAAGTGATATCCGGCTACTCGCCG
ATCACGGTTTTTCTCCTTGGATCCATTCTAATTTTCCTCGTAGTCTACAA
CAAGCGCCGATCCCGACTGGTGAAGTACATCGAAAAGATCCCGGGACCTG
CGGCCATGCCCTTCCTGGGCAACGCCATCGAAATGAATGTGGATCACGAC
GAGCTCTTTAACCGCGTCATCGGCATGCAAAAGTTGTGGGGCACGCGTAT
CGGAATCAATCGCGTTTGGCAGGGAACAGCTCCAAGGGTGCTCCTCTTCG
AGCCTGAGACCGTGGAGCCCATACTGAACAGCCAGAAGTTTGTGAACAAG
AGCCACGACTACGACTATCTGCATCCTTGGTTGGGAGAGGGTCTGCTTAC
CAGCACAGATCGCAAGTGGCACTCCCGCAGGAAGATCCTCACACCTGCCT
TCCACTTCAAAATCTTGGACGATTTCATCGACGTTTTCAATGAGCAGAGC
GCAGTCTTGGCCAGAAAATTGGCGGTGGAGGTGGGCAGCGAGGCGTTCAA
CCTGTTCCCCTACGTCACGCTCTGCACCTTGGACATTGTTTGTGAAACCG
CCATGGGTCGCAGAATTTACGCCCAGAGCAATAGTGAATCGGAGTATGTG
AAGGCGGTCTATGGCATTGGATCGATTGTACAGAGTCGGCAGGCGAAGAT
TTGGCTGCAGAGCGACTTCATTTTCAGCCTGACCGCGGAGTACAAGCTCC
ACCAGAGCTACATAAACACCCTGCATGGATTTTCCAACATGGTGATCCGC
GAGCGAAAGGCTGAGTTGGCCATTCTCCAGGAGAACAATAACAACAATAA
TAATAACGCCCCCGATGCCTATGATGACGTGGGAAAGAAGAAGCGCCTGG
CCTTCCTGGACCTTCTCATCGATGCCTCTAAGGAAGGAACTGTTCTTTCT
AATGAGGACATTCGCGAGGAGGTAGACACCTTTATGTTCGAGGGCCACGA
CACCACCTCTGCGGCCATTTCCTGGACACTATTTTTGCTGGGCTGCCACC
CAGAGTACCAGGAGCGCGTGGTGGAGGAACTGGACTCTATCTTCGGCGAT
GACAAGGAGACGCCGGCCACCATGAAGAACCTTATGGATATGCGATACCT
GGAGTGCTGCATCAAGGACTCGCTGCGCCTGTTTCCCAGTGTCCCAATGA
TGGCTAGGATGGTGGGCGAGGATGTGAACATTGGTGGAAAAATCGTGCCC
GCCGGAACTCAGGCCATCATTATGACCTACGCCCTGCACCGCAATCCGCG
CGTCTTCCCCAAGCCGGAGCAGTTCAATCCGGACAATTTCCTGCCGGAAA
ACTGCGCCGGACGCCATCCCTTCGCCTATATACCCTTTAGCGCAGGACCG
CGTAACTGCATTGGCCAGAAGTTCGCCATTCTGGAGGAGAAGGCCGTGAT
TTCCACGGTTTTGAGGAAGTACAAAATCGAGGCTGTGGATCGCCGGGAGG
ATCTCACGCTGCTGGGCGAGCTCATTCTGCGGCCCAAGGACGGCCTACGG
GTTAAGATTACTCCAAGGGATTAAAAGCTTTCTAGACCAT
BS16435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-RA | 1608 | CG1438-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Cyp4d1-RA | 1539 | CG3656-PA | 912..972 | 1006..1066 | 245 | 93.4 | Plus |
Cyp4d1-RB | 1512 | CG3656-PB | 885..945 | 1006..1066 | 245 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-RA | 1906 | CG1438-RA | 134..1741 | 17..1624 | 8040 | 100 | Plus |
Cyp4d1-RA | 1685 | CG3656-RA | 988..1048 | 1006..1066 | 245 | 93.4 | Plus |
Cyp4d1-RB | 1644 | CG3656-RB | 947..1007 | 1006..1066 | 245 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30900178..30900523 | 1279..1624 | 1715 | 99.7 | Plus |
3R | 32079331 | 3R | 30899495..30899785 | 714..1004 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 30899846..30900127 | 1004..1285 | 1410 | 100 | Plus |
3R | 32079331 | 3R | 30894171..30894405 | 17..251 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 30897861..30898022 | 483..644 | 810 | 100 | Plus |
3R | 32079331 | 3R | 30897678..30897796 | 366..484 | 595 | 100 | Plus |
3R | 32079331 | 3R | 30897502..30897618 | 251..367 | 585 | 100 | Plus |
3R | 32079331 | 3R | 30898111..30898181 | 644..714 | 355 | 100 | Plus |
X | 23542271 | X | 2159842..2159902 | 1066..1006 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 2476973..2477028 | 1057..1002 | 190 | 89.3 | Minus |
Blast to na_te.dros performed 2014-11-27 07:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker | 7256 | Stalker STALKER 7256bp | 2761..2791 | 877..907 | 119 | 87.1 | Plus |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1490..1528 | 503..541 | 114 | 76.9 | Plus |
BS16435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:08 Download gff for
BS16435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 1..1608 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:20 Download gff for
BS16435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 202..1824 | 8..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:41 Download gff for
BS16435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 134..1739 | 17..1622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:08 Download gff for
BS16435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 202..1824 | 8..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:52 Download gff for
BS16435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 134..1739 | 17..1622 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:52 Download gff for
BS16435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30899846..30900125 | 1004..1283 | 100 | -> | Plus |
3R | 30900183..30900521 | 1284..1622 | 100 | | Plus |
3R | 30894171..30894405 | 17..251 | 100 | -> | Plus |
3R | 30897503..30897618 | 252..367 | 100 | -> | Plus |
3R | 30897680..30897796 | 368..484 | 100 | -> | Plus |
3R | 30897863..30898022 | 485..644 | 100 | -> | Plus |
3R | 30898112..30898181 | 645..714 | 100 | -> | Plus |
3R | 30899496..30899784 | 715..1003 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:41 Download gff for
BS16435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26719893..26720127 | 17..251 | 100 | -> | Plus |
arm_3R | 26723225..26723340 | 252..367 | 100 | -> | Plus |
arm_3R | 26723402..26723518 | 368..484 | 100 | -> | Plus |
arm_3R | 26723585..26723744 | 485..644 | 100 | -> | Plus |
arm_3R | 26723834..26723903 | 645..714 | 100 | -> | Plus |
arm_3R | 26725218..26725506 | 715..1003 | 100 | -> | Plus |
arm_3R | 26725568..26725847 | 1004..1283 | 100 | -> | Plus |
arm_3R | 26725905..26726243 | 1284..1622 | 100 | | Plus |
BS16435.pep Sequence
Translation from 16 to 1623
> BS16435.pep
MSSKVITSLMAESILLSKVGQVISGYSPITVFLLGSILIFLVVYNKRRSR
LVKYIEKIPGPAAMPFLGNAIEMNVDHDELFNRVIGMQKLWGTRIGINRV
WQGTAPRVLLFEPETVEPILNSQKFVNKSHDYDYLHPWLGEGLLTSTDRK
WHSRRKILTPAFHFKILDDFIDVFNEQSAVLARKLAVEVGSEAFNLFPYV
TLCTLDIVCETAMGRRIYAQSNSESEYVKAVYGIGSIVQSRQAKIWLQSD
FIFSLTAEYKLHQSYINTLHGFSNMVIRERKAELAILQENNNNNNNNAPD
AYDDVGKKKRLAFLDLLIDASKEGTVLSNEDIREEVDTFMFEGHDTTSAA
ISWTLFLLGCHPEYQERVVEELDSIFGDDKETPATMKNLMDMRYLECCIK
DSLRLFPSVPMMARMVGEDVNIGGKIVPAGTQAIIMTYALHRNPRVFPKP
EQFNPDNFLPENCAGRHPFAYIPFSAGPRNCIGQKFAILEEKAVISTVLR
KYKIEAVDRREDLTLLGELILRPKDGLRVKITPRD*
BS16435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-PA | 535 | CG1438-PA | 1..535 | 1..535 | 2773 | 100 | Plus |
Cyp4d1-PA | 512 | CG3656-PA | 5..510 | 29..534 | 1028 | 41.2 | Plus |
Cyp4d1-PB | 503 | CG3656-PB | 1..501 | 31..534 | 1025 | 42 | Plus |
Cyp4d2-PB | 501 | CG3466-PB | 31..500 | 58..534 | 978 | 41.6 | Plus |
Cyp4d2-PA | 501 | CG3466-PA | 31..500 | 58..534 | 978 | 41.6 | Plus |