Clone BS16435 Report

Search the DGRC for BS16435

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4c3-RA
Protein status:BS16435.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16435.3prime Sequence

911 bp (804 high quality bases) assembled on 2007-05-15

> BS16435.3prime
ATGGTCTAGAAAGCTTTTAATCCCTTGGAGTAATCTTAACCCGTAGGCCG
TCCTTGGGCCGCAGAATGAGCTCGCCCAGCAGCGTGAGATCCTCCCGGCG
ATCCACAGCCTCGATTTTGTACTTCCTCAAAACCGTGGAAATCACGGCCT
TCTCCTCCAGAATGGCGAACTTCTGGCCAATGCAGTTACGCGGTCCTGCG
CTAAAGGGTATATAGGCGAAGGGATGGCGTCCGGCGCAGTTTTCCGGCAG
GAAATTGTCCGGATTGAACTGCTCCGGCTTGGGGAAGACGCGCGGATTGC
GGTGCAGGGCGTAGGTCATAATGATGGCCTGAGTTCCGGCGGGCACGATT
TTTCCACCAATGTTCACATCCTCGCCCACCATCCTAGCCATCATTGGGAC
ACTGGGAAACAGGCGCAGCGAGTCCTTGATGCAGCACTCCAGGTATCGCA
TATCCATAAGGTTCTTCATGGTGGCCGGCGTCTCCTTGTCATCGCCGAAG
ATAGAGTCCAGTTCCTCCACCACGCGCTCCTGGTACTCTGGGTGGCAGCC
CAGCAAAAATAGTGTCCAGGAAATGGCCGCAGAGGTGGTGTCGTGGCCCT
CGAACATAAAGGTGTCTACCTCCTCGCGAATGTCCTCATTAGAAAGAACA
GTTCCTTCCTTAGAGGCATCGATGAGAAGGTCCAGGAAGGCCAGGCGCTT
CTTCTTTCCCACGTCATCATAGGCATCGGGGGCGTTATTATTATTGTTGT
TATTGTTCTCCTGGAGAATGGCCAACTCAGCCTTTCGCTCGCGGATCACC
ATGTTGGAAAATCCATGCAGGGTGTTTATGTAGCTCTGGTGGAGCTTGTA
CTCCGCGGTCAGGCTGAAAATGAAGTCGCTCTGCAGCCAAATCTTTCGCT
GCCGACTCTGT

BS16435.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1438-PA 1608 Cyp4c3-RA 730..1608 895..17 4395 100 Minus
CG3656-PB 1512 Cyp4d1-RB 885..945 635..575 205 93.4 Minus
CG3656-PA 1539 Cyp4d1-RA 912..972 635..575 205 93.4 Minus
CG16761-PA 1533 Cyp4d20-RA 919..963 628..584 150 93.3 Minus
CG3656-PB 1512 Cyp4d1-RB 1336..1368 187..155 140 96.9 Minus
CG3656-PA 1539 Cyp4d1-RA 1363..1395 187..155 140 96.9 Minus
CG3540-PA 1524 Cyp4d14-RA 910..947 634..597 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4c3-RA 1906 CG1438-RA 847..1741 911..17 4430 99.8 Minus
Cyp4d1-RA 1685 CG3656-RA 988..1048 635..575 245 93.4 Minus
Cyp4d1-RB 1644 CG3656-RB 947..1007 635..575 245 93.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30900178..30900523 362..17 1715 99.7 Minus
3R 32079331 3R 30899846..30900127 637..356 1410 100 Minus
3R 32079331 3R 30899511..30899785 911..637 1330 98.9 Minus
X 23542271 X 2159842..2159902 575..635 245 93.4 Plus
3L 28110227 3L 2476973..2477028 584..639 190 89.3 Plus
Blast to na_te.dros performed 2015-02-13 06:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker 7256 Stalker STALKER 7256bp 2761..2791 764..734 119 87.1 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 2874..2897 757..734 111 95.8 Minus

BS16435.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:59 Download gff for BS16435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1438-PA 714..1608 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:58 Download gff for BS16435.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 847..1747 12..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:14 Download gff for BS16435.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 847..1747 12..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:14 Download gff for BS16435.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30900183..30900529 12..357 99   Minus
3R 30899511..30899784 638..911 99 -> Minus
3R 30899846..30900125 358..637 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:58 Download gff for BS16435.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26725233..26725506 638..911 99 -> Minus
arm_3R 26725568..26725847 358..637 100 -> Minus
arm_3R 26725905..26726251 12..357 99   Minus

BS16435.5prime Sequence

873 bp (745 high quality bases) assembled on 2007-05-15

> BS16435.5prime
GAAGTTATCAGTCGACATGTCCTCGAAAGTGATAACCTCGTTAATGGCCG
AGAGCATACTGCTCTCAAAAGTGGGCCAAGTGATATCCGGCTACTCGCCG
ATCACGGTTTTTCTCCTTGGATCCATTCTAATTTTCCTCGTAGTCTACAA
CAAGCGCCGATCCCGACTGGTGAAGTACATCGAAAAGATCCCGGGACCTG
CGGCCATGCCCTTCCTGGGCAACGCCATCGAAATGAATGTGGATCACGAC
GAGCTCTTTAACCGCGTCATCGGCATGCAAAAGTTGTGGGGCACGCGTAT
CGGAATCAATCGCGTTTGGCAGGGAACAGCTCCAAGGGTGCTCCTCTTCG
AGCCTGAGACCGTGGAGCCCATACTGAACAGCCAGAAGTTTGTGAACAAG
AGCCACGACTACGACTATCTGCATCCTTGGTTGGGAGAGGGTCTGCTTAC
CAGCACAGATCGCAAGTGGCACTCCCGCAGGAAGATCCTCACACCTGCCT
TCCACTTCAAAATCTTGGACGATTTCATCGACGTTTTCAATGAGCAGAGC
GCAGTCTTGGCCAGAAAATTGGCGGTGGAGGTGGGCAGCGAGGCGTTCAA
CCTGTTCCCCTACGTCACGCTCTGCACCTTGGACATTGTTTGTGAAACCG
CCATGGGTCGCAGAATTTACGCCCAGAGCAATAGTGAATCGGAGTATGTG
AAGGCGGTCTATGGCATTGGATCGATTGTACAGAGTCGGCAGGCGAAGAT
TTGGCTGCAGAGCGACTTCATTTTCAGCCTGACCGCGGAAGTACAGCTCC
ACCAGAGCTACATAAACACCCTGCATGGATTTTTCCACATGGTGATCCGC
GAGCGAAAGGCTGAATGGGCCAT

BS16435.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1438-PA 1608 Cyp4c3-RA 1..773 17..789 3865 100 Plus
CG1438-PA 1608 Cyp4c3-RA 779..848 795..864 300 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4c3-RA 1906 CG1438-RA 134..990 17..873 4180 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30894171..30894405 17..251 1175 100 Plus
3R 32079331 3R 30897861..30898022 483..644 810 100 Plus
3R 32079331 3R 30899495..30899654 714..873 665 94.4 Plus
3R 32079331 3R 30897678..30897796 366..484 595 100 Plus
3R 32079331 3R 30897502..30897618 251..367 585 100 Plus
3R 32079331 3R 30898111..30898181 644..714 355 100 Plus
Blast to na_te.dros performed 2015-02-11 04:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1490..1528 503..541 114 76.9 Plus
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 1635..1670 506..541 108 77.8 Plus

BS16435.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:22 Download gff for BS16435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1438-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:11 Download gff for BS16435.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 125..990 8..873 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:53 Download gff for BS16435.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 125..990 8..873 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:53 Download gff for BS16435.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30894162..30894405 8..251 98 -> Plus
3R 30897503..30897618 252..367 100 -> Plus
3R 30897680..30897796 368..484 100 -> Plus
3R 30897863..30898022 485..644 100 -> Plus
3R 30898112..30898181 645..714 100 -> Plus
3R 30899496..30899654 715..873 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:11 Download gff for BS16435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26723225..26723340 252..367 100 -> Plus
arm_3R 26723402..26723518 368..484 100 -> Plus
arm_3R 26719884..26720127 8..251 98 -> Plus
arm_3R 26723585..26723744 485..644 100 -> Plus
arm_3R 26723834..26723903 645..714 100 -> Plus
arm_3R 26725218..26725376 715..873 96   Plus

BS16435.complete Sequence

1640 bp assembled on 2007-05-07

GenBank Submission: FJ638147

> BS16435.complete
GAAGTTATCAGTCGACATGTCCTCGAAAGTGATAACCTCGTTAATGGCCG
AGAGCATACTGCTCTCAAAAGTGGGCCAAGTGATATCCGGCTACTCGCCG
ATCACGGTTTTTCTCCTTGGATCCATTCTAATTTTCCTCGTAGTCTACAA
CAAGCGCCGATCCCGACTGGTGAAGTACATCGAAAAGATCCCGGGACCTG
CGGCCATGCCCTTCCTGGGCAACGCCATCGAAATGAATGTGGATCACGAC
GAGCTCTTTAACCGCGTCATCGGCATGCAAAAGTTGTGGGGCACGCGTAT
CGGAATCAATCGCGTTTGGCAGGGAACAGCTCCAAGGGTGCTCCTCTTCG
AGCCTGAGACCGTGGAGCCCATACTGAACAGCCAGAAGTTTGTGAACAAG
AGCCACGACTACGACTATCTGCATCCTTGGTTGGGAGAGGGTCTGCTTAC
CAGCACAGATCGCAAGTGGCACTCCCGCAGGAAGATCCTCACACCTGCCT
TCCACTTCAAAATCTTGGACGATTTCATCGACGTTTTCAATGAGCAGAGC
GCAGTCTTGGCCAGAAAATTGGCGGTGGAGGTGGGCAGCGAGGCGTTCAA
CCTGTTCCCCTACGTCACGCTCTGCACCTTGGACATTGTTTGTGAAACCG
CCATGGGTCGCAGAATTTACGCCCAGAGCAATAGTGAATCGGAGTATGTG
AAGGCGGTCTATGGCATTGGATCGATTGTACAGAGTCGGCAGGCGAAGAT
TTGGCTGCAGAGCGACTTCATTTTCAGCCTGACCGCGGAGTACAAGCTCC
ACCAGAGCTACATAAACACCCTGCATGGATTTTCCAACATGGTGATCCGC
GAGCGAAAGGCTGAGTTGGCCATTCTCCAGGAGAACAATAACAACAATAA
TAATAACGCCCCCGATGCCTATGATGACGTGGGAAAGAAGAAGCGCCTGG
CCTTCCTGGACCTTCTCATCGATGCCTCTAAGGAAGGAACTGTTCTTTCT
AATGAGGACATTCGCGAGGAGGTAGACACCTTTATGTTCGAGGGCCACGA
CACCACCTCTGCGGCCATTTCCTGGACACTATTTTTGCTGGGCTGCCACC
CAGAGTACCAGGAGCGCGTGGTGGAGGAACTGGACTCTATCTTCGGCGAT
GACAAGGAGACGCCGGCCACCATGAAGAACCTTATGGATATGCGATACCT
GGAGTGCTGCATCAAGGACTCGCTGCGCCTGTTTCCCAGTGTCCCAATGA
TGGCTAGGATGGTGGGCGAGGATGTGAACATTGGTGGAAAAATCGTGCCC
GCCGGAACTCAGGCCATCATTATGACCTACGCCCTGCACCGCAATCCGCG
CGTCTTCCCCAAGCCGGAGCAGTTCAATCCGGACAATTTCCTGCCGGAAA
ACTGCGCCGGACGCCATCCCTTCGCCTATATACCCTTTAGCGCAGGACCG
CGTAACTGCATTGGCCAGAAGTTCGCCATTCTGGAGGAGAAGGCCGTGAT
TTCCACGGTTTTGAGGAAGTACAAAATCGAGGCTGTGGATCGCCGGGAGG
ATCTCACGCTGCTGGGCGAGCTCATTCTGCGGCCCAAGGACGGCCTACGG
GTTAAGATTACTCCAAGGGATTAAAAGCTTTCTAGACCAT

BS16435.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4c3-RA 1608 CG1438-PA 1..1608 17..1624 8040 100 Plus
Cyp4d1-RA 1539 CG3656-PA 912..972 1006..1066 245 93.4 Plus
Cyp4d1-RB 1512 CG3656-PB 885..945 1006..1066 245 93.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4c3-RA 1906 CG1438-RA 134..1741 17..1624 8040 100 Plus
Cyp4d1-RA 1685 CG3656-RA 988..1048 1006..1066 245 93.4 Plus
Cyp4d1-RB 1644 CG3656-RB 947..1007 1006..1066 245 93.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30900178..30900523 1279..1624 1715 99.7 Plus
3R 32079331 3R 30899495..30899785 714..1004 1455 100 Plus
3R 32079331 3R 30899846..30900127 1004..1285 1410 100 Plus
3R 32079331 3R 30894171..30894405 17..251 1175 100 Plus
3R 32079331 3R 30897861..30898022 483..644 810 100 Plus
3R 32079331 3R 30897678..30897796 366..484 595 100 Plus
3R 32079331 3R 30897502..30897618 251..367 585 100 Plus
3R 32079331 3R 30898111..30898181 644..714 355 100 Plus
X 23542271 X 2159842..2159902 1066..1006 245 93.4 Minus
3L 28110227 3L 2476973..2477028 1057..1002 190 89.3 Minus
Blast to na_te.dros performed 2014-11-27 07:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker 7256 Stalker STALKER 7256bp 2761..2791 877..907 119 87.1 Plus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1490..1528 503..541 114 76.9 Plus

BS16435.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:08 Download gff for BS16435.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 1..1608 17..1624 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:20 Download gff for BS16435.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 202..1824 8..1629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:41 Download gff for BS16435.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 134..1739 17..1622 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:08 Download gff for BS16435.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 202..1824 8..1629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:52 Download gff for BS16435.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4c3-RA 134..1739 17..1622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:52 Download gff for BS16435.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30899846..30900125 1004..1283 100 -> Plus
3R 30900183..30900521 1284..1622 100   Plus
3R 30894171..30894405 17..251 100 -> Plus
3R 30897503..30897618 252..367 100 -> Plus
3R 30897680..30897796 368..484 100 -> Plus
3R 30897863..30898022 485..644 100 -> Plus
3R 30898112..30898181 645..714 100 -> Plus
3R 30899496..30899784 715..1003 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:41 Download gff for BS16435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26719893..26720127 17..251 100 -> Plus
arm_3R 26723225..26723340 252..367 100 -> Plus
arm_3R 26723402..26723518 368..484 100 -> Plus
arm_3R 26723585..26723744 485..644 100 -> Plus
arm_3R 26723834..26723903 645..714 100 -> Plus
arm_3R 26725218..26725506 715..1003 100 -> Plus
arm_3R 26725568..26725847 1004..1283 100 -> Plus
arm_3R 26725905..26726243 1284..1622 100   Plus

BS16435.pep Sequence

Translation from 16 to 1623

> BS16435.pep
MSSKVITSLMAESILLSKVGQVISGYSPITVFLLGSILIFLVVYNKRRSR
LVKYIEKIPGPAAMPFLGNAIEMNVDHDELFNRVIGMQKLWGTRIGINRV
WQGTAPRVLLFEPETVEPILNSQKFVNKSHDYDYLHPWLGEGLLTSTDRK
WHSRRKILTPAFHFKILDDFIDVFNEQSAVLARKLAVEVGSEAFNLFPYV
TLCTLDIVCETAMGRRIYAQSNSESEYVKAVYGIGSIVQSRQAKIWLQSD
FIFSLTAEYKLHQSYINTLHGFSNMVIRERKAELAILQENNNNNNNNAPD
AYDDVGKKKRLAFLDLLIDASKEGTVLSNEDIREEVDTFMFEGHDTTSAA
ISWTLFLLGCHPEYQERVVEELDSIFGDDKETPATMKNLMDMRYLECCIK
DSLRLFPSVPMMARMVGEDVNIGGKIVPAGTQAIIMTYALHRNPRVFPKP
EQFNPDNFLPENCAGRHPFAYIPFSAGPRNCIGQKFAILEEKAVISTVLR
KYKIEAVDRREDLTLLGELILRPKDGLRVKITPRD*

BS16435.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4c3-PA 535 CG1438-PA 1..535 1..535 2773 100 Plus
Cyp4d1-PA 512 CG3656-PA 5..510 29..534 1028 41.2 Plus
Cyp4d1-PB 503 CG3656-PB 1..501 31..534 1025 42 Plus
Cyp4d2-PB 501 CG3466-PB 31..500 58..534 978 41.6 Plus
Cyp4d2-PA 501 CG3466-PA 31..500 58..534 978 41.6 Plus