Clone Sequence Records
BS16437.3prime Sequence
834 bp (833 high quality bases) assembled on 2007-05-15
> BS16437.3prime
ATGGTCTAGAAAGCTTTTACATGTTGAAGGACAATGGCTTGATATTGGCC
ACCGAGGACATGCGGCGCACACGGCCCATCATCTTCCGCTCGATGTCCTC
CAGCGTCTTGCCCTGCGTTTCGGGCACGTAGATTATCACAAAGAACAGAC
CCACGAAGCAGATGGCGCCGAATAGCCAGAACGCTCCATGCGCGCCCATA
GCAACCGTGAGGTCCTGGAAGGTCTTGGTCACCACAAACGTGCAGAACCA
GTTGAAAGCCGTGGCCACCGAGGCAGCCGATCCGCGAATTTTGGCCGGCA
GAATCTCACCCATCATCAGCCAGGGAATGGGTCCGAAGCCCAGGGAGAAT
CCCAGAATGTAGATGACGAAGCAAGTGAGTGGCAACCAACCCAAATGGGA
CACATCCGGACCGTACGTCTTGCAGTAGAAGAAGCCGCCCAGAACGAACA
GGGTCAGAACCATGGCGATGTCGGAGACATATAGAAGAATCTTTCTGCCC
GCCCGATCAATCAGAACGATGCCTATAAACGTAGCCAAAAAGTTAACAAT
TCCCACAATGATCGTGCAGAGATTGCCATCAATGGTGGATCCCGCATCCT
TGAAGATCTGGACCGTGTAGAAGATAACCGCGTTGATACCGCTGAACTGT
TGGAAGAACATCAGACCCAAGGAAATTGATAGTGGCTTCAGATTGTTGAG
CTTAAGCAGCTCCAACATGGTGTTTCGCGATGCCTGACGATCGGCATCGG
CCTGGGATCGCATCAAACCCTTCAGTTCGGGCTCCACATCAGCCTCCTTG
CCACGCAGCCATTTCAAAGCCTTCCTGGCGCGCT
BS16437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30035-PA | 2574 | CG30035-RA | 1757..2574 | 834..17 | 4090 | 100 | Minus |
CG30035-PB | 1470 | CG30035-RB | 653..1470 | 834..17 | 4090 | 100 | Minus |
CG8234-PA | 1467 | CG8234-RA | 1031..1352 | 456..135 | 1235 | 95.3 | Minus |
CG8234-PB | 1302 | CG8234-RB | 866..1187 | 456..135 | 1235 | 95.3 | Minus |
CG8234-PA | 1467 | CG8234-RA | 772..935 | 715..552 | 520 | 92.6 | Minus |
CG8234-PB | 1302 | CG8234-RB | 625..770 | 697..552 | 505 | 93.8 | Minus |
CG8234-PA | 1467 | CG8234-RA | 653..755 | 834..732 | 365 | 94.1 | Minus |
CG8234-PB | 1302 | CG8234-RB | 488..590 | 834..732 | 365 | 94.1 | Minus |
CG8234-PA | 1467 | CG8234-RA | 940..1026 | 547..461 | 260 | 91.9 | Minus |
CG8234-PB | 1302 | CG8234-RB | 775..861 | 547..461 | 260 | 91.9 | Minus |
CG8234-PA | 1467 | CG8234-RA | 1360..1420 | 127..67 | 155 | 90.1 | Minus |
CG8234-PB | 1302 | CG8234-RB | 1195..1255 | 127..67 | 155 | 90.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-1-RB | 1980 | CG30035-RB | 812..1630 | 834..16 | 4095 | 100 | Minus |
Tret1-1-RA | 3132 | CG30035-RA | 1964..2782 | 834..16 | 4095 | 100 | Minus |
Tret1-2-RA | 1695 | CG8234-RA | 765..1580 | 834..16 | 2995 | 91.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11673487..11673830 | 834..491 | 1720 | 100 | Minus |
2R | 25286936 | 2R | 11673888..11674179 | 492..201 | 1445 | 99.7 | Minus |
2R | 25286936 | 2R | 11676968..11677311 | 834..491 | 1210 | 90.1 | Minus |
2R | 25286936 | 2R | 11677366..11677657 | 492..201 | 1175 | 93.5 | Minus |
2R | 25286936 | 2R | 11674243..11674432 | 205..16 | 950 | 100 | Minus |
2R | 25286936 | 2R | 11677713..11677899 | 205..16 | 600 | 88.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:55:53 has no hits.
BS16437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:50 Download gff for
BS16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30035-PB | 653..1470 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:17 Download gff for
BS16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-1-RA | 1964..2782 | 16..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:58 Download gff for
BS16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-1-RA | 1964..2782 | 16..834 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:58 Download gff for
BS16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11673487..11673830 | 491..834 | 100 | -> | Minus |
2R | 11673890..11674175 | 205..490 | 100 | -> | Minus |
2R | 11674244..11674432 | 16..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:17 Download gff for
BS16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7561749..7561937 | 16..204 | 100 | | Minus |
arm_2R | 7560992..7561335 | 491..834 | 100 | -> | Minus |
arm_2R | 7561395..7561680 | 205..490 | 100 | -> | Minus |
BS16437.5prime Sequence
862 bp (815 high quality bases) assembled on 2007-05-15
> BS16437.5prime
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGTCGAGGAGCCCAAGGCCATTTGTACCTTCTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGGGCTCCCTAGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCTCTTGTGTCGATGACCGATCGGAATATCA
CCTCGTTTGAGGTCACCCAAGATGCTGGTTCTTGGGTTGGTGGCATCATG
CCGCTGGCTGGATTGGCAGGTGGCATAGCCGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAACACCATCCTGGCCACTGCGGTGCCCTTCATTGTCT
CATCACTACTGATTGCCTGTGCTGTGAATGTGGCTATGGTTCTGTGCGGA
CGATTCCTGGCTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTACCTGGGTGAAACTGTGCAGCCTGAGGTGCGAGGCACTTTGGGTTTGC
TGCCCACGGCCTTTGGTAACATAGGCATCCTGCTCTGCTTCGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTAATGTTCCTTATTCCGGAAACTCCGCGCTGGTTTG
TGGGCCGTGGTCTGGAGGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCTGATGTGGAGCCCGAACTGAANGGTTTGATGCGATCCCA
GGCCGATGCCGATCGTCAGGCATCGCGAAACACCATGTTGGAGCTGCTTA
AGCTCAACAATCTGAAGCCACTATCCATTTTCTTGGGTCTGATGTTCTTC
CAACAGTTCAAC
BS16437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30035-PB | 1470 | CG30035-RB | 1..844 | 17..860 | 4151 | 99.6 | Plus |
CG30035-PA | 2574 | CG30035-RA | 1186..1948 | 98..860 | 3746 | 99.6 | Plus |
CG8234-PA | 1467 | CG8234-RA | 1..366 | 17..382 | 1130 | 92.3 | Plus |
CG8234-PA | 1467 | CG8234-RA | 526..713 | 542..729 | 690 | 94.6 | Plus |
CG8234-PB | 1302 | CG8234-RB | 361..548 | 542..729 | 690 | 94.6 | Plus |
CG8234-PB | 1302 | CG8234-RB | 1..201 | 182..382 | 605 | 92 | Plus |
CG8234-PA | 1467 | CG8234-RA | 374..516 | 390..532 | 465 | 93 | Plus |
CG8234-PB | 1302 | CG8234-RB | 209..351 | 390..532 | 465 | 93 | Plus |
CG8234-PA | 1467 | CG8234-RA | 772..844 | 788..860 | 215 | 91.7 | Plus |
CG8234-PB | 1302 | CG8234-RB | 625..679 | 806..860 | 200 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-1-RB | 1980 | CG30035-RB | 160..1003 | 17..860 | 4179 | 99.6 | Plus |
Tret1-1-RA | 3132 | CG30035-RA | 1393..2155 | 98..860 | 3774 | 99.6 | Plus |
Tret1-2-RA | 1695 | CG8234-RA | 113..956 | 17..860 | 3084 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11673045..11673678 | 227..860 | 3129 | 99.5 | Plus |
2R | 25286936 | 2R | 11676526..11677159 | 227..860 | 2289 | 90.7 | Plus |
2R | 25286936 | 2R | 11672713..11672843 | 97..227 | 655 | 100 | Plus |
2R | 25286936 | 2R | 11676208..11676338 | 97..227 | 505 | 92.4 | Plus |
2R | 25286936 | 2R | 11672215..11672300 | 17..102 | 430 | 100 | Plus |
2R | 25286936 | 2R | 11676047..11676132 | 17..102 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:32:23 has no hits.
BS16437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:02 Download gff for
BS16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30035-PB | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:04 Download gff for
BS16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-1-RB | 156..1005 | 13..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:50 Download gff for
BS16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-1-RB | 156..1005 | 13..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:50 Download gff for
BS16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11672211..11672298 | 13..100 | 97 | -> | Plus |
2R | 11672717..11672842 | 101..226 | 100 | -> | Plus |
2R | 11673045..11673680 | 227..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:04 Download gff for
BS16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7559716..7559803 | 13..100 | 97 | -> | Plus |
arm_2R | 7560222..7560347 | 101..226 | 100 | -> | Plus |
arm_2R | 7560550..7561185 | 227..862 | 99 | | Plus |
BS16437.complete Sequence
1502 bp assembled on 2007-05-07
GenBank Submission: FJ638148
> BS16437.complete
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGTCGAGGAGCCCAAGGCCATTTGTACCTTCTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGGGCTCCCTAGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCTCTTGTGTCGATGACCGATCGGAATATCA
CCTCGTTTGAGGTCACCCAAGATGCTGGTTCTTGGGTTGGTGGCATCATG
CCGCTGGCTGGATTGGCAGGTGGCATAGCCGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAACACCATCCTGGCCACTGCGGTGCCCTTCATTGTCT
CATCACTACTGATTGCCTGTGCTGTGAATGTGGCTATGGTTCTGTGCGGA
CGATTCCTGGCTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTACCTGGGTGAAACTGTGCAGCCTGAGGTGCGAGGCACTTTGGGTTTGC
TGCCCACGGCCTTTGGTAACATAGGCATCCTGCTCTGCTTCGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTAATGTTCCTTATTCCGGAAACTCCGCGCTGGTTTG
TGGGCCGTGGTCTGGAGGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCTGATGTGGAGCCCGAACTGAAGGGTTTGATGCGATCCCA
GGCCGATGCCGATCGTCAGGCATCGCGAAACACCATGTTGGAGCTGCTTA
AGCTCAACAATCTGAAGCCACTATCAATTTCCTTGGGTCTGATGTTCTTC
CAACAGTTCAGCGGTATCAACGCGGTTATCTTCTACACGGTCCAGATCTT
CAAGGATGCGGGATCCACCATTGATGGCAATCTCTGCACGATCATTGTGG
GAATTGTTAACTTTTTGGCTACGTTTATAGGCATCGTTCTGATTGATCGG
GCGGGCAGAAAGATTCTTCTATATGTCTCCGACATCGCCATGGTTCTGAC
CCTGTTCGTTCTGGGCGGCTTCTTCTACTGCAAGACGTACGGTCCGGATG
TGTCCCATTTGGGTTGGTTGCCACTCACTTGCTTCGTCATCTACATTCTG
GGATTCTCCCTGGGCTTCGGACCCATTCCCTGGCTGATGATGGGTGAGAT
TCTGCCGGCCAAAATTCGCGGATCGGCTGCCTCGGTGGCCACGGCTTTCA
ACTGGTTCTGCACGTTTGTGGTGACCAAGACCTTCCAGGACCTCACGGTT
GCTATGGGCGCGCATGGAGCGTTCTGGCTATTCGGCGCCATCTGCTTCGT
GGGTCTGTTCTTTGTGATAATCTACGTGCCCGAAACGCAGGGCAAGACGC
TGGAGGACATCGAGCGGAAGATGATGGGCCGTGTGCGCCGCATGTCCTCG
GTGGCCAATATCAAGCCATTGTCCTTCAACATGTAAAAGCTTTCTAGACC
AT
BS16437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-1-RB | 1470 | CG30035-PB | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Tret1-1-RA | 2574 | CG30035-PA | 1186..2574 | 98..1486 | 6945 | 100 | Plus |
Tret1-2-RA | 1467 | CG8234-PA | 1..1467 | 17..1486 | 5395 | 91.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-1-RB | 1980 | CG30035-RB | 160..1630 | 17..1487 | 7355 | 100 | Plus |
Tret1-1-RA | 3132 | CG30035-RA | 1393..2782 | 98..1487 | 6950 | 100 | Plus |
Tret1-2-RA | 1695 | CG8234-RA | 113..1580 | 17..1487 | 5400 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11673045..11673830 | 227..1012 | 3930 | 100 | Plus |
2R | 25286936 | 2R | 11676526..11677311 | 227..1012 | 2850 | 90.8 | Plus |
2R | 25286936 | 2R | 11673888..11674179 | 1011..1302 | 1445 | 99.7 | Plus |
2R | 25286936 | 2R | 11677366..11677657 | 1011..1302 | 1175 | 93.5 | Plus |
2R | 25286936 | 2R | 11674243..11674432 | 1298..1487 | 950 | 100 | Plus |
2R | 25286936 | 2R | 11672713..11672843 | 97..227 | 655 | 100 | Plus |
2R | 25286936 | 2R | 11677713..11677899 | 1298..1487 | 600 | 88.9 | Plus |
2R | 25286936 | 2R | 11676208..11676338 | 97..227 | 505 | 92.4 | Plus |
2R | 25286936 | 2R | 11672215..11672300 | 17..102 | 430 | 100 | Plus |
2R | 25286936 | 2R | 11676047..11676132 | 17..102 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:25:40 has no hits.
BS16437.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:09 Download gff for
BS16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30035-RB | 1..1470 | 17..1486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:22 Download gff for
BS16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30035-RB | 251..1725 | 13..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:42 Download gff for
BS16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-1-RB | 160..1627 | 17..1484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:09 Download gff for
BS16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30035-RB | 251..1725 | 13..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:51 Download gff for
BS16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-1-RB | 160..1627 | 17..1484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:51 Download gff for
BS16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11672215..11672298 | 17..100 | 100 | -> | Plus |
2R | 11672717..11672842 | 101..226 | 100 | -> | Plus |
2R | 11673045..11673830 | 227..1012 | 100 | -> | Plus |
2R | 11673890..11674175 | 1013..1298 | 100 | -> | Plus |
2R | 11674244..11674429 | 1299..1484 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:42 Download gff for
BS16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7559720..7559803 | 17..100 | 100 | -> | Plus |
arm_2R | 7560222..7560347 | 101..226 | 100 | -> | Plus |
arm_2R | 7560550..7561335 | 227..1012 | 100 | -> | Plus |
arm_2R | 7561395..7561680 | 1013..1298 | 100 | -> | Plus |
arm_2R | 7561749..7561934 | 1299..1484 | 100 | | Plus |
BS16437.pep Sequence
Translation from 16 to 1485
> BS16437.pep
MKILMRADTHVSFSVPVEEPKAICTFSQVLAALSVSLGSLVVGFVSAYTS
PALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRN
TILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGET
VQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLIL
MFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADR
QASRNTMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGS
TIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLG
GFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKI
RGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFV
IIYVPETQGKTLEDIERKMMGRVRRMSSVANIKPLSFNM*
BS16437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-1-PB | 489 | CG30035-PB | 1..489 | 1..489 | 2499 | 100 | Plus |
Tret1-1-PA | 857 | CG30035-PA | 391..857 | 23..489 | 2364 | 99.1 | Plus |
Tret1-2-PA | 488 | CG8234-PA | 1..488 | 1..489 | 2222 | 88.8 | Plus |
CG10960-PA | 471 | CG10960-PA | 15..459 | 28..471 | 849 | 40.5 | Plus |
CG10960-PC | 471 | CG10960-PC | 15..459 | 28..471 | 849 | 40.5 | Plus |