Clone BS16437 Report

Search the DGRC for BS16437

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptTret1-1-RB
Protein status:BS16437.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16437.3prime Sequence

834 bp (833 high quality bases) assembled on 2007-05-15

> BS16437.3prime
ATGGTCTAGAAAGCTTTTACATGTTGAAGGACAATGGCTTGATATTGGCC
ACCGAGGACATGCGGCGCACACGGCCCATCATCTTCCGCTCGATGTCCTC
CAGCGTCTTGCCCTGCGTTTCGGGCACGTAGATTATCACAAAGAACAGAC
CCACGAAGCAGATGGCGCCGAATAGCCAGAACGCTCCATGCGCGCCCATA
GCAACCGTGAGGTCCTGGAAGGTCTTGGTCACCACAAACGTGCAGAACCA
GTTGAAAGCCGTGGCCACCGAGGCAGCCGATCCGCGAATTTTGGCCGGCA
GAATCTCACCCATCATCAGCCAGGGAATGGGTCCGAAGCCCAGGGAGAAT
CCCAGAATGTAGATGACGAAGCAAGTGAGTGGCAACCAACCCAAATGGGA
CACATCCGGACCGTACGTCTTGCAGTAGAAGAAGCCGCCCAGAACGAACA
GGGTCAGAACCATGGCGATGTCGGAGACATATAGAAGAATCTTTCTGCCC
GCCCGATCAATCAGAACGATGCCTATAAACGTAGCCAAAAAGTTAACAAT
TCCCACAATGATCGTGCAGAGATTGCCATCAATGGTGGATCCCGCATCCT
TGAAGATCTGGACCGTGTAGAAGATAACCGCGTTGATACCGCTGAACTGT
TGGAAGAACATCAGACCCAAGGAAATTGATAGTGGCTTCAGATTGTTGAG
CTTAAGCAGCTCCAACATGGTGTTTCGCGATGCCTGACGATCGGCATCGG
CCTGGGATCGCATCAAACCCTTCAGTTCGGGCTCCACATCAGCCTCCTTG
CCACGCAGCCATTTCAAAGCCTTCCTGGCGCGCT

BS16437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30035-PA 2574 CG30035-RA 1757..2574 834..17 4090 100 Minus
CG30035-PB 1470 CG30035-RB 653..1470 834..17 4090 100 Minus
CG8234-PA 1467 CG8234-RA 1031..1352 456..135 1235 95.3 Minus
CG8234-PB 1302 CG8234-RB 866..1187 456..135 1235 95.3 Minus
CG8234-PA 1467 CG8234-RA 772..935 715..552 520 92.6 Minus
CG8234-PB 1302 CG8234-RB 625..770 697..552 505 93.8 Minus
CG8234-PA 1467 CG8234-RA 653..755 834..732 365 94.1 Minus
CG8234-PB 1302 CG8234-RB 488..590 834..732 365 94.1 Minus
CG8234-PA 1467 CG8234-RA 940..1026 547..461 260 91.9 Minus
CG8234-PB 1302 CG8234-RB 775..861 547..461 260 91.9 Minus
CG8234-PA 1467 CG8234-RA 1360..1420 127..67 155 90.1 Minus
CG8234-PB 1302 CG8234-RB 1195..1255 127..67 155 90.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-1-RB 1980 CG30035-RB 812..1630 834..16 4095 100 Minus
Tret1-1-RA 3132 CG30035-RA 1964..2782 834..16 4095 100 Minus
Tret1-2-RA 1695 CG8234-RA 765..1580 834..16 2995 91.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11673487..11673830 834..491 1720 100 Minus
2R 25286936 2R 11673888..11674179 492..201 1445 99.7 Minus
2R 25286936 2R 11676968..11677311 834..491 1210 90.1 Minus
2R 25286936 2R 11677366..11677657 492..201 1175 93.5 Minus
2R 25286936 2R 11674243..11674432 205..16 950 100 Minus
2R 25286936 2R 11677713..11677899 205..16 600 88.9 Minus
Blast to na_te.dros performed on 2015-02-13 06:55:53 has no hits.

BS16437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:50 Download gff for BS16437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30035-PB 653..1470 17..834 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:17 Download gff for BS16437.3prime
Subject Subject Range Query Range Percent Splice Strand
Tret1-1-RA 1964..2782 16..834 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:58 Download gff for BS16437.3prime
Subject Subject Range Query Range Percent Splice Strand
Tret1-1-RA 1964..2782 16..834 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:58 Download gff for BS16437.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11673487..11673830 491..834 100 -> Minus
2R 11673890..11674175 205..490 100 -> Minus
2R 11674244..11674432 16..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:17 Download gff for BS16437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7561749..7561937 16..204 100   Minus
arm_2R 7560992..7561335 491..834 100 -> Minus
arm_2R 7561395..7561680 205..490 100 -> Minus

BS16437.5prime Sequence

862 bp (815 high quality bases) assembled on 2007-05-15

> BS16437.5prime
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGTCGAGGAGCCCAAGGCCATTTGTACCTTCTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGGGCTCCCTAGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCTCTTGTGTCGATGACCGATCGGAATATCA
CCTCGTTTGAGGTCACCCAAGATGCTGGTTCTTGGGTTGGTGGCATCATG
CCGCTGGCTGGATTGGCAGGTGGCATAGCCGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAACACCATCCTGGCCACTGCGGTGCCCTTCATTGTCT
CATCACTACTGATTGCCTGTGCTGTGAATGTGGCTATGGTTCTGTGCGGA
CGATTCCTGGCTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTACCTGGGTGAAACTGTGCAGCCTGAGGTGCGAGGCACTTTGGGTTTGC
TGCCCACGGCCTTTGGTAACATAGGCATCCTGCTCTGCTTCGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTAATGTTCCTTATTCCGGAAACTCCGCGCTGGTTTG
TGGGCCGTGGTCTGGAGGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCTGATGTGGAGCCCGAACTGAANGGTTTGATGCGATCCCA
GGCCGATGCCGATCGTCAGGCATCGCGAAACACCATGTTGGAGCTGCTTA
AGCTCAACAATCTGAAGCCACTATCCATTTTCTTGGGTCTGATGTTCTTC
CAACAGTTCAAC

BS16437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30035-PB 1470 CG30035-RB 1..844 17..860 4151 99.6 Plus
CG30035-PA 2574 CG30035-RA 1186..1948 98..860 3746 99.6 Plus
CG8234-PA 1467 CG8234-RA 1..366 17..382 1130 92.3 Plus
CG8234-PA 1467 CG8234-RA 526..713 542..729 690 94.6 Plus
CG8234-PB 1302 CG8234-RB 361..548 542..729 690 94.6 Plus
CG8234-PB 1302 CG8234-RB 1..201 182..382 605 92 Plus
CG8234-PA 1467 CG8234-RA 374..516 390..532 465 93 Plus
CG8234-PB 1302 CG8234-RB 209..351 390..532 465 93 Plus
CG8234-PA 1467 CG8234-RA 772..844 788..860 215 91.7 Plus
CG8234-PB 1302 CG8234-RB 625..679 806..860 200 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-1-RB 1980 CG30035-RB 160..1003 17..860 4179 99.6 Plus
Tret1-1-RA 3132 CG30035-RA 1393..2155 98..860 3774 99.6 Plus
Tret1-2-RA 1695 CG8234-RA 113..956 17..860 3084 91.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11673045..11673678 227..860 3129 99.5 Plus
2R 25286936 2R 11676526..11677159 227..860 2289 90.7 Plus
2R 25286936 2R 11672713..11672843 97..227 655 100 Plus
2R 25286936 2R 11676208..11676338 97..227 505 92.4 Plus
2R 25286936 2R 11672215..11672300 17..102 430 100 Plus
2R 25286936 2R 11676047..11676132 17..102 325 91.9 Plus
Blast to na_te.dros performed on 2015-02-11 02:32:23 has no hits.

BS16437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:02 Download gff for BS16437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30035-PB 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:04 Download gff for BS16437.5prime
Subject Subject Range Query Range Percent Splice Strand
Tret1-1-RB 156..1005 13..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:50 Download gff for BS16437.5prime
Subject Subject Range Query Range Percent Splice Strand
Tret1-1-RB 156..1005 13..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:50 Download gff for BS16437.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11672211..11672298 13..100 97 -> Plus
2R 11672717..11672842 101..226 100 -> Plus
2R 11673045..11673680 227..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:04 Download gff for BS16437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7559716..7559803 13..100 97 -> Plus
arm_2R 7560222..7560347 101..226 100 -> Plus
arm_2R 7560550..7561185 227..862 99   Plus

BS16437.complete Sequence

1502 bp assembled on 2007-05-07

GenBank Submission: FJ638148

> BS16437.complete
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGTCGAGGAGCCCAAGGCCATTTGTACCTTCTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGGGCTCCCTAGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCTCTTGTGTCGATGACCGATCGGAATATCA
CCTCGTTTGAGGTCACCCAAGATGCTGGTTCTTGGGTTGGTGGCATCATG
CCGCTGGCTGGATTGGCAGGTGGCATAGCCGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAACACCATCCTGGCCACTGCGGTGCCCTTCATTGTCT
CATCACTACTGATTGCCTGTGCTGTGAATGTGGCTATGGTTCTGTGCGGA
CGATTCCTGGCTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTACCTGGGTGAAACTGTGCAGCCTGAGGTGCGAGGCACTTTGGGTTTGC
TGCCCACGGCCTTTGGTAACATAGGCATCCTGCTCTGCTTCGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTAATGTTCCTTATTCCGGAAACTCCGCGCTGGTTTG
TGGGCCGTGGTCTGGAGGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCTGATGTGGAGCCCGAACTGAAGGGTTTGATGCGATCCCA
GGCCGATGCCGATCGTCAGGCATCGCGAAACACCATGTTGGAGCTGCTTA
AGCTCAACAATCTGAAGCCACTATCAATTTCCTTGGGTCTGATGTTCTTC
CAACAGTTCAGCGGTATCAACGCGGTTATCTTCTACACGGTCCAGATCTT
CAAGGATGCGGGATCCACCATTGATGGCAATCTCTGCACGATCATTGTGG
GAATTGTTAACTTTTTGGCTACGTTTATAGGCATCGTTCTGATTGATCGG
GCGGGCAGAAAGATTCTTCTATATGTCTCCGACATCGCCATGGTTCTGAC
CCTGTTCGTTCTGGGCGGCTTCTTCTACTGCAAGACGTACGGTCCGGATG
TGTCCCATTTGGGTTGGTTGCCACTCACTTGCTTCGTCATCTACATTCTG
GGATTCTCCCTGGGCTTCGGACCCATTCCCTGGCTGATGATGGGTGAGAT
TCTGCCGGCCAAAATTCGCGGATCGGCTGCCTCGGTGGCCACGGCTTTCA
ACTGGTTCTGCACGTTTGTGGTGACCAAGACCTTCCAGGACCTCACGGTT
GCTATGGGCGCGCATGGAGCGTTCTGGCTATTCGGCGCCATCTGCTTCGT
GGGTCTGTTCTTTGTGATAATCTACGTGCCCGAAACGCAGGGCAAGACGC
TGGAGGACATCGAGCGGAAGATGATGGGCCGTGTGCGCCGCATGTCCTCG
GTGGCCAATATCAAGCCATTGTCCTTCAACATGTAAAAGCTTTCTAGACC
AT

BS16437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-1-RB 1470 CG30035-PB 1..1470 17..1486 7350 100 Plus
Tret1-1-RA 2574 CG30035-PA 1186..2574 98..1486 6945 100 Plus
Tret1-2-RA 1467 CG8234-PA 1..1467 17..1486 5395 91.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-1-RB 1980 CG30035-RB 160..1630 17..1487 7355 100 Plus
Tret1-1-RA 3132 CG30035-RA 1393..2782 98..1487 6950 100 Plus
Tret1-2-RA 1695 CG8234-RA 113..1580 17..1487 5400 91.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11673045..11673830 227..1012 3930 100 Plus
2R 25286936 2R 11676526..11677311 227..1012 2850 90.8 Plus
2R 25286936 2R 11673888..11674179 1011..1302 1445 99.7 Plus
2R 25286936 2R 11677366..11677657 1011..1302 1175 93.5 Plus
2R 25286936 2R 11674243..11674432 1298..1487 950 100 Plus
2R 25286936 2R 11672713..11672843 97..227 655 100 Plus
2R 25286936 2R 11677713..11677899 1298..1487 600 88.9 Plus
2R 25286936 2R 11676208..11676338 97..227 505 92.4 Plus
2R 25286936 2R 11672215..11672300 17..102 430 100 Plus
2R 25286936 2R 11676047..11676132 17..102 325 91.9 Plus
Blast to na_te.dros performed on 2014-11-26 16:25:40 has no hits.

BS16437.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:09 Download gff for BS16437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30035-RB 1..1470 17..1486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:22 Download gff for BS16437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30035-RB 251..1725 13..1487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:42 Download gff for BS16437.complete
Subject Subject Range Query Range Percent Splice Strand
Tret1-1-RB 160..1627 17..1484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:09 Download gff for BS16437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30035-RB 251..1725 13..1487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:51 Download gff for BS16437.complete
Subject Subject Range Query Range Percent Splice Strand
Tret1-1-RB 160..1627 17..1484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:51 Download gff for BS16437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11672215..11672298 17..100 100 -> Plus
2R 11672717..11672842 101..226 100 -> Plus
2R 11673045..11673830 227..1012 100 -> Plus
2R 11673890..11674175 1013..1298 100 -> Plus
2R 11674244..11674429 1299..1484 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:42 Download gff for BS16437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7559720..7559803 17..100 100 -> Plus
arm_2R 7560222..7560347 101..226 100 -> Plus
arm_2R 7560550..7561335 227..1012 100 -> Plus
arm_2R 7561395..7561680 1013..1298 100 -> Plus
arm_2R 7561749..7561934 1299..1484 100   Plus

BS16437.pep Sequence

Translation from 16 to 1485

> BS16437.pep
MKILMRADTHVSFSVPVEEPKAICTFSQVLAALSVSLGSLVVGFVSAYTS
PALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRN
TILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGET
VQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLIL
MFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADR
QASRNTMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGS
TIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLG
GFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKI
RGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFV
IIYVPETQGKTLEDIERKMMGRVRRMSSVANIKPLSFNM*

BS16437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-1-PB 489 CG30035-PB 1..489 1..489 2499 100 Plus
Tret1-1-PA 857 CG30035-PA 391..857 23..489 2364 99.1 Plus
Tret1-2-PA 488 CG8234-PA 1..488 1..489 2222 88.8 Plus
CG10960-PA 471 CG10960-PA 15..459 28..471 849 40.5 Plus
CG10960-PC 471 CG10960-PC 15..459 28..471 849 40.5 Plus