Clone BS16444 Report

Search the DGRC for BS16444

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptAkap200-RA
Protein status:BS16444.pep: full length peptide match
Sequenced Size:2294

Clone Sequence Records

BS16444.3prime Sequence

890 bp (789 high quality bases) assembled on 2007-05-15

> BS16444.3prime
ATGGTCTAGAAAGCTTTTATTCGCATGTAACGGGCAGTTGTTCCTGTGTT
GTAACGTCTGCCGCGGCGGCATTCTTCTCCTTCAGATCCTTGGCGAGATC
CACCTTGTTGTTGCTCTCGCCCTCCTGTTCCGCGGATCTCGCATCCAATT
CTACCAGCAGATCGCCGCCTGCTTTGGTAATCGGAGCATCCAGATCGCTA
ATGATGTTTTCAACCAGGTCGATTTCATTCTCCTTATCGTTATCGCTATG
CGCCTCCTCGGAAATAACTTGCTGGTCTGATGTCTCTTGTTCGGTGGTTT
CCTCAACAGCTACTGTCTGTTCTTCGAGGATTTCAACCTGATTTTCGATT
GCCGCCTGCTCGTCGGATACTGAAGAAGATTCAGCAACGTTGGAGCTGAT
GCTACCGGTTTCTTTCTCAACTTCACAATCTACAGCTTCTGTAACAGCGA
CCTCATCGTTTACGGCCGCCGGGTCAATGGGATCTGGAACTGGGTAGGAC
TCTTTTTCGTCGGGTGTATCTTGATCTTCAATAGGTTTCTGGACATCATC
AGGAGTAGGAGAAGGAGCCGTTACTTCATCGTTTTGAACTGGTAAAACTT
CCTCAACCACAACCGTGGAGCTGGATTCCTCAATTGTTTCAGGAACAGAA
TCCACCTTGGCCTCCTCCTGTTGTTTCTCTTGTTCGGTGACAATTTCTGC
TGCCTGTTCGGTGATTTCAGCCACTATGCTGATTGCCTGCTGTTCGATCT
CATCGGGCTTCACGTCGTTTACTTCGGGGACATTCGGGGTAACCTGCTCC
TCGATAACATCCTCGGACAGCACAAATGCGGAGACACGAGACGGAGGCGG
GGATTTGGGCAATGGAGGTGGCGGACTGCTGCTTCTCGTC

BS16444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13388-PA 2262 Akap200-RA 1389..2262 890..17 4370 100 Minus
CG13388-PD 2514 Akap200-RD 1641..2514 890..17 4370 100 Minus
CG13388-PC 1119 Akap200-RC 1031..1119 105..17 445 100 Minus
CG13388-PB 1119 Akap200-RB 1031..1119 105..17 445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Akap200-RG 3354 CG13388-RG 1871..2744 890..17 4370 100 Minus
Akap200-RE 3053 CG13388-RE 1570..2443 890..17 4370 100 Minus
Akap200-RD 3358 CG13388-RD 1875..2748 890..17 4370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8428676..8429465 890..101 3950 100 Minus
3R 32079331 3R 219549..220338 890..101 3605 97.1 Minus
3R 32079331 3R 230378..231167 890..101 3605 97.1 Minus
3R 32079331 3R 237101..237890 890..101 3605 97.1 Minus
3R 32079331 3R 244389..245178 890..101 3605 97.1 Minus
3R 32079331 3R 246972..247761 890..101 3590 97 Minus
3R 32079331 3R 233588..234377 890..101 3575 96.8 Minus
3R 32079331 3R 271397..272186 890..101 3575 96.8 Minus
3R 32079331 3R 273762..274551 890..101 3575 96.8 Minus
3R 32079331 3R 276639..277428 890..101 3560 96.7 Minus
3R 32079331 3R 251173..251962 890..101 3530 96.5 Minus
3CEN 744266 3CEN 578696..579485 101..890 3530 96.5 Plus
3R 32079331 3R 240459..240962 890..387 2265 96.6 Minus
3R 32079331 3R 246071..246574 890..387 2265 96.6 Minus
2L 23513712 2L 8430279..8430367 105..17 445 100 Minus
3R 32079331 3R 241372..241463 890..799 415 96.7 Minus
Blast to na_te.dros performed on 2015-02-13 11:59:13 has no hits.

BS16444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:43:59 Download gff for BS16444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13388-PD 1641..2514 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:37 Download gff for BS16444.3prime
Subject Subject Range Query Range Percent Splice Strand
Akap200-RD 1875..2752 12..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:28 Download gff for BS16444.3prime
Subject Subject Range Query Range Percent Splice Strand
Akap200-RD 1875..2752 12..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:28 Download gff for BS16444.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8428676..8429462 104..890 100 -> Minus
2L 8430281..8430371 12..103 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:37 Download gff for BS16444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8428676..8429462 104..890 100 -> Minus
arm_2L 8430281..8430371 12..103 96   Minus

BS16444.5prime Sequence

870 bp (803 high quality bases) assembled on 2007-05-15

> BS16444.5prime
GAAGTTATCAGTCGACATGGGTAAAGCTCAGAGCAAGCGTTCAATCGACA
TCACCACCGATCCCAAGAAGGTCGGAGAGGGCGATGAGGTCGCCGGCAAG
GTGGAGAAAATCGATGTGGACCAGAAGACGGACGCGCCGGCTGTGAACGG
AGACGCTGCCACGCCCAAAGAGGGTGGTGATGAAGCGGCGGCGGTAGAGA
AAAAGGAAACTGAGGAGCATTCTGAGAACGACAAAGATCTGACCACCGAA
AAGAGTGCCGCAGTCGCTGAGGGTGGTGATGCGGTCGCTGAAACGGCCAA
GGGCGAGGAGGGATCTCCCAAGGAGGCTGCTGCTGGTGAGGATATAACCC
CGCTGGCAGACGAAAGCATCAAGTCCAAGTCCAAGAAGGACAAGGTCAAG
AAGAAGTGGTCCTTCCGAAGCATTTCCTTTGGCAAGAAGGACAAACAGAA
ACCGGCCAAGTCGGAGGAGGCTACGTCGCCCACCTCTGGCACAACGTCGC
CCACGACGGCCGAGGCAGAGGCTGCTCCAGCTGGGGATGCAGCTGTCGCA
GAACCATCGGTGGCTACAAATGGCGAGGCTGAAAAGCCAGCTGAGACTGC
CACTGCCACCAGCGAGCCGGCGTCCAAGGATGAGAAGCCCGCCGAAAATG
GATCAGCGACCGAGCAGGAGAAACAGGCCAACGGAGAAACCGAAAAGGCG
GCGCCAGCACCTTCCACAGTTGAGGAAGCGGCGAAGCCCAAGCCCGCCGA
AGAACCAGCCACAGTCACTGCCACCGAATCGAACACCACTGCCACCGAAG
AAGTTCCCCGTGAAGAGAGCCAGCCAGAGCCCGAAGTGGTGACCAATGGA
CATGGAGCCGGAGAGGCGCT

BS16444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13388-PA 2262 Akap200-RA 1..792 17..808 3960 100 Plus
CG13388-PC 1119 Akap200-RC 1..792 17..808 3960 100 Plus
CG13388-PB 1119 Akap200-RB 1..792 17..808 3960 100 Plus
CG13388-PD 2514 Akap200-RD 1..792 17..808 3960 100 Plus
CG13388-PA 2262 Akap200-RA 797..854 813..870 290 100 Plus
CG13388-PC 1119 Akap200-RC 797..854 813..870 290 100 Plus
CG13388-PB 1119 Akap200-RB 797..854 813..870 290 100 Plus
CG13388-PD 2514 Akap200-RD 797..854 813..870 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Akap200-RG 3354 CG13388-RG 231..1084 17..870 4225 99.8 Plus
Akap200-RF 2230 CG13388-RF 182..1035 17..870 4225 99.8 Plus
Akap200-RE 3053 CG13388-RE 182..1035 17..870 4225 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8427156..8427553 198..595 1990 100 Plus
2L 23513712 2L 8427613..8427889 594..870 1325 98.6 Plus
2L 23513712 2L 8426911..8427093 17..199 915 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:13:10 has no hits.

BS16444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:08 Download gff for BS16444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13388-PB 1..854 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:27 Download gff for BS16444.5prime
Subject Subject Range Query Range Percent Splice Strand
Akap200-RE 182..1035 17..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:12 Download gff for BS16444.5prime
Subject Subject Range Query Range Percent Splice Strand
Akap200-RE 182..1035 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:12 Download gff for BS16444.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8426911..8427093 17..199 100 -> Plus
2L 8427158..8427553 200..595 100 -> Plus
2L 8427615..8427889 596..870 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:27 Download gff for BS16444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8426911..8427093 17..199 100 -> Plus
arm_2L 8427158..8427553 200..595 100 -> Plus
arm_2L 8427615..8427889 596..870 99   Plus

BS16444.complete Sequence

2294 bp assembled on 2009-12-08

GenBank Submission: KX806326

> BS16444.complete
GAAGTTATCAGTCGACATGGGTAAAGCTCAGAGCAAGCGTTCAATCGACA
TCACCACCGATCCCAAGAAGGTCGGAGAGGGCGATGAGGTCGCCGGCAAG
GTGGAGAAAATCGATGTGGACCAGAAGACGGACGCGCCGGCTGTGAACGG
AGACGCTGCCACGCCCAAAGAGGGTGGTGATGAAGCGGCGGCGGTAGAGA
AAAAGGAAACTGAGGAGCATTCTGAGAACGACAAAGATCTGACCACCGAA
AAGAGTGCCGCAGTCGCTGAGGGTGGTGATGCGGTCGCTGAAACGGCCAA
GGGCGAGGAGGGATCTCCCAAGGAGGCTGCTGCTGGTGAGGATATAACCC
CGCTGGCAGACGAAAGCATCAAGTCCAAGTCCAAGAAGGACAAGGTCAAG
AAGAAGTGGTCCTTCCGAAGCATTTCCTTTGGCAAGAAGGACAAACAGAA
ACCGGCCAAGTCGGAGGAGGCTACGTCGCCCACCTCTGGCACAACGTCGC
CCACGACGGCCGAGGCAGAGGCTGCTCCAGCTGGGGATGCAGCTGTCGCA
GAACCATCGGTGGCTACAAATGGCGAGGCTGAAAAGCCAGCTGAGACTGC
CACTGCCACCAGCGAGCCGGCGTCCAAGGATGAGAAGCCCGCCGAAAATG
GATCAGCGACCGAGCAGGAGAAACAGGCCAACGGAGAAACCGAAAAGGCG
GCGCCAGCACCTTCCACAGTTGAGGAAGCGGCGAAGCCCAAGCCCGCCGA
AGAACCAGCCACAGTCACTGCCACCGAATCGAACACCACTGCCACCGAAG
AAGTTCCCGTGAAAGAGAGCCAGCCAGAGCCCGAAGTGGTGACCAATGGA
CATGGAGCCGGAGAGGCGCTGACCAACGGATCAAGCAATGGACTGGCCGA
GTCCCCAGTGACCGAGACAGCACCTGTCGCTGACAACATTCCGAGCAACG
TTGATGACGAGCCACCGCACCAGAATGGCACCAATGGCACCACCACGCCC
CCGCCCACTCCCGTGGCCACCGAGATCGAGAAGGGACAGCAAATTGAGGC
CAGCAGTGAAGTGATTGAAACAGTGACCCCCAGCCAAGCGGAAGAGGAAG
TTGTGGCAGCAATCATCAAGGCGGTTAGCAGCGAACCTGAAGCCGAAACG
GAGACTGAGACAGAGGCCGAGGGATTCGTGCTTGTTGCTCCTGTGTCCAC
CGAAGTCGAAGTTCCCGTTTCCATTTCCCCCATTGAACCCGTGGCAGAGG
TTTCCCAAGTTAAAATTGAACCACTTGTCGAAATTCCCGAAGTTGAAGCC
AAGTCCGTAGCCGATGTGTCTGAAGCTGATACGGAATCCGTACCAAAAGT
TTCTGAATTGAAAACTGAAGTTTCCGAAATTGAGTTCGAGTCCGTTATTG
TGGAGACGAGAAGCAGCAGTCCGCCACCTCCATTGCCCAAATCCCCGCCT
CCGTCTCGTGTCTCCGCATTTGTGCTGTCCGAGGATGTTATCGAGGAGCA
GGTTACCCCGAATGTCCCCGAAGTAAACGACGTGAAGCCCGATGAGATCG
AACAGCAGGCAATCAGCATAGTGGCTGAAATCACCGAACAGGCAGCAGAA
ATTGTCACCGAACAAGAGAAACAACAGGAGGAGGCCAAGGTGGATTCTGT
TCCTGAAACAATTGAGGAATCCAGCTCCACGGTTGTGGTTGAGGAAGTTT
TACCAGTTCAAAACGATGAAGTAACGGCTCCTTCTCCTACTCCTGATGAT
GTCCAGAAACCTATTGAAGATCAAGATACACCCGACGAAAAAGAGTCCTA
CCCAGTTCCAGATCCCATTGACCCGGCGGCCGTAAACGATGAGGTCGCTG
TTACAGAAGCTGTAGATTGTGAAGTTGAGAAAGAAACCGGTAGCATCAGC
TCCAACGTTGCTGAATCTTCTTCAGTATCCGACGAGCAGGCGGCAATCGA
AAATCAGGTTGAAATCCTCGAAGAACAGACAGTAGCTGTTGAGGAAACCA
CCGAACAAGAGACATCAGACCAGCAAGTTATTTCCGAGGAGGCGCATAGC
GATAACGATAAGGAGAATGAAATCGACCTGGTTGAAAACATCATTAGCGA
TCTGGATGCTCCGATTACCAAAGCAGGCGGCGATCTGCTGGTAGAATTGG
ATGCGAGATCCGCGGAACAGGAGGGCGAGAGCAACAACAAGGTGGATCTC
GCCAAGGATCTGAAGGAGAAGAATGCCGCCGCGGCAGACGTTACAACACA
GGAACAACTGCCCGTTACATGCGAATAAAAGCTTTCTAGACCAT

BS16444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Akap200-RE 2262 CG13388-PE 1..2262 17..2278 11310 100 Plus
Akap200-RA 2262 CG13388-PA 1..2262 17..2278 11310 100 Plus
Akap200-RG 2514 CG13388-PG 1283..2514 1047..2278 6160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Akap200-RE 3053 CG13388-RE 182..2443 17..2278 11310 100 Plus
Akap200-RA 2620 CG13388-RA 182..2443 17..2278 11310 100 Plus
Akap200-RG 3354 CG13388-RG 1513..2744 1047..2278 6160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8428318..8429465 1047..2194 5740 100 Plus
3R 32079331 3R 271260..272186 1268..2194 4215 97 Plus
3R 32079331 3R 273625..274551 1268..2194 4215 97 Plus
3R 32079331 3R 276502..277428 1268..2194 4200 96.9 Plus
3R 32079331 3R 236964..237890 1268..2194 4185 96.8 Plus
3R 32079331 3R 219412..220338 1268..2194 4170 96.7 Plus
3R 32079331 3R 230241..231167 1268..2194 4170 96.7 Plus
3R 32079331 3R 246835..247761 1268..2194 4155 96.5 Plus
3R 32079331 3R 233451..234377 1268..2194 4140 96.4 Plus
3R 32079331 3R 251036..251962 1268..2194 4110 96.2 Plus
3CEN 744266 3CEN 578696..579622 2194..1268 4110 96.2 Minus
3R 32079331 3R 244273..245178 1289..2194 4080 96.7 Plus
3CEN 744266 3CEN 327201..328047 1350..2194 3730 96.6 Plus
3R 32079331 3R 240322..240962 1268..1908 2860 96.4 Plus
3R 32079331 3R 245934..246574 1268..1908 2845 96.3 Plus
3CEN 744266 3CEN 393299..393845 1814..1268 2510 97.3 Minus
2L 23513712 2L 8427613..8428068 594..1049 2280 100 Plus
2L 23513712 2L 8427156..8427553 198..595 1990 100 Plus
3R 32079331 3R 241235..241463 1268..1496 995 95.6 Plus
2L 23513712 2L 8426911..8427093 17..199 915 100 Plus
2L 23513712 2L 8430279..8430367 2190..2278 445 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:48:20 has no hits.

BS16444.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:32 Download gff for BS16444.complete
Subject Subject Range Query Range Percent Splice Strand
Akap200-RA 235..2494 17..2276 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:17 Download gff for BS16444.complete
Subject Subject Range Query Range Percent Splice Strand
Akap200-RA 182..2441 17..2276 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:02 Download gff for BS16444.complete
Subject Subject Range Query Range Percent Splice Strand
Akap200-RA 235..2494 17..2276 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:11 Download gff for BS16444.complete
Subject Subject Range Query Range Percent Splice Strand
Akap200-RA 182..2441 17..2276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:11 Download gff for BS16444.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8426911..8427093 17..199 100 -> Plus
2L 8427158..8427553 200..595 100 -> Plus
2L 8427615..8428067 596..1048 100 -> Plus
2L 8428320..8429462 1049..2191 100 -> Plus
2L 8430281..8430365 2192..2276 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:17 Download gff for BS16444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8426911..8427093 17..199 100 -> Plus
arm_2L 8427158..8427553 200..595 100 -> Plus
arm_2L 8427615..8428067 596..1048 100 -> Plus
arm_2L 8428320..8429462 1049..2191 100 -> Plus
arm_2L 8430281..8430365 2192..2276 100   Plus

BS16444.pep Sequence

Translation from 16 to 2277

> BS16444.pep
MGKAQSKRSIDITTDPKKVGEGDEVAGKVEKIDVDQKTDAPAVNGDAATP
KEGGDEAAAVEKKETEEHSENDKDLTTEKSAAVAEGGDAVAETAKGEEGS
PKEAAAGEDITPLADESIKSKSKKDKVKKKWSFRSISFGKKDKQKPAKSE
EATSPTSGTTSPTTAEAEAAPAGDAAVAEPSVATNGEAEKPAETATATSE
PASKDEKPAENGSATEQEKQANGETEKAAPAPSTVEEAAKPKPAEEPATV
TATESNTTATEEVPVKESQPEPEVVTNGHGAGEALTNGSSNGLAESPVTE
TAPVADNIPSNVDDEPPHQNGTNGTTTPPPTPVATEIEKGQQIEASSEVI
ETVTPSQAEEEVVAAIIKAVSSEPEAETETETEAEGFVLVAPVSTEVEVP
VSISPIEPVAEVSQVKIEPLVEIPEVEAKSVADVSEADTESVPKVSELKT
EVSEIEFESVIVETRSSSPPPPLPKSPPPSRVSAFVLSEDVIEEQVTPNV
PEVNDVKPDEIEQQAISIVAEITEQAAEIVTEQEKQQEEAKVDSVPETIE
ESSSTVVVEEVLPVQNDEVTAPSPTPDDVQKPIEDQDTPDEKESYPVPDP
IDPAAVNDEVAVTEAVDCEVEKETGSISSNVAESSSVSDEQAAIENQVEI
LEEQTVAVEETTEQETSDQQVISEEAHSDNDKENEIDLVENIISDLDAPI
TKAGGDLLVELDARSAEQEGESNNKVDLAKDLKEKNAAAADVTTQEQLPV
TCE*

BS16444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Akap200-PE 753 CG13388-PE 1..753 1..753 3737 100 Plus
Akap200-PA 753 CG13388-PA 1..753 1..753 3737 100 Plus
Akap200-PG 837 CG13388-PG 1..837 1..753 3311 84 Plus
Akap200-PD 837 CG13388-PD 1..837 1..753 3311 84 Plus
Akap200-PF 372 CG13388-PF 1..344 1..344 1743 100 Plus