Clone Sequence Records
BS16451.complete Sequence
2501 bp assembled on 2009-12-08
GenBank Submission: KX803185
> BS16451.complete
GAAGTTATCAGTCGACATGGACCACAACGAAATCTCCATGACTATGGACG
CCAAGCTGGATACACACGATAAGCGACCAGTGGCGCTGCGTTACAAGACA
TGGACCCGCTGCCAAGTGAAAATAGAGGCCATTAAGTGTGTGCCCTGCTT
CCTGCGGCTCAGTTTCCAGGCCATGGAGACCGAGTCTCACTCCCAAGAGT
GTCACCCCGCTAAACCCATTAGCGTCTCCGTAAACGTTCCGGGCGTCAGC
TTGAGCCTGGCTACCTCGCGCACGAAGCAGCACTCGTACGGGCTGTTTTG
GACGCAAAATCGGCGGGACTGCTTCATCTATTTCGCCCTGGAAACGGAGA
CATCCTGCCGACGTCACATGAAATGGATGCGGAAGTCGATTAAGAATCTG
GAACTTTATCGCCAGGTCTTTCTAGAACAGCGCCGGCTGAGCAGGGGTCC
CGGAGGTCTGGGCCCACTGCCTAACCTGCCGGAAACCCTCGACGCTAGCG
CTCTCTCTCCGCGAGTCTCGCAAATATACGAGGAGATTTTTGACGGCAGC
CGCATCTCCCGCGTCTCAATCGCATCCGGCATTTACGAAGAGATGAAGCC
GTCAGTCATGGAGACTCCTTCACCGCCACCGCTGCCCGCACATCCTTACC
GTCAGCGAATAAACACTTTTGAGTGCGCCCAGCTTGGCGAGATTGCGCGG
TCCAGCACCAATCCCGAATCGGAGCTGGCCAAGAAGAAGAAATACAAGAA
CATGCTGGACAACCTGTTCGGGAGTTCACGTCAAAAGCGTTCCGGCAGCA
CCAGCGAGGTGGCCAATGAACCCAGCGATGAGGTCCTGCCACTGTATGAG
AATGCCCCCACGCCGGAGCCTGTGCTTCCGGTAAAGCGCACATCCCAGTT
GAACAAGTCTCAGCGTAATAGCTTCTCAAGTCCGGACTTGTCCAAACTCA
ATCTGCTGGACACCTTTGGAGAATACTTCGAGGCCCAGAACCATGAGTCG
AGCATGGAGATAAACATTAGTCTGGATGAGTCGGTCATTGAGCCGATCTC
TCGCAATGAGATTATTGCGCAAATATCTAGCCAATTGGGCAAAGCAGACT
CTTTGGAAAGTCTGAATGTTTCGGAGCAACTTCCGTACAACTTCAACTTT
TCCGCTTGTAACACGTCAACCATCAATCTCATTGGATCGCATGGAGCTGT
TCCGCAGAGTAATCAGCTAAAGAAAAATAAGATACTGCACGAAGACCTTA
CGGGATACTGTGTAATGGCACCCATTTTAAAGGCGACGGTAAAAGATTTG
CCACCACAGCCAGGCGGCAGTACAGTGTCCACATCCTCCGGATATTCCAC
GGGCTCCTACTGCTCCTCCACCAGCAGCTGTAACACGGAGGACCAGCCCA
CCAAGACGCAGATCGCCAATGAGAGTGACATATACGAAGTCATGCATGGA
ACCTCTCTGAACAGTACCGTCGGAGCGGCTGCAGCTGGATTTGCGGAACA
CCTCTACGAGAACCTTTTGGCTGTGAAGGCCGCACAGGAGCTGGAGGCGC
AGCCTGTCGGCTTTGGACTGAGCACAAGCACACCCACCGAATCTCCCCTG
GCGCCGGCCTTGCCGCAAAAGGGAACGCCCAAGGACAAAACTTTGCAACA
GAAGCCAGAGGAGGAAAACTACTACCAGACACCAAGAAAGTCGATTATCA
GTGTGGACGACAAGATACCCTCCTATTATCCGAACAGCTGCGACACACTC
AAGTCAAAGCGACGCAGTCCCACCGAACATGGACCTAGTTTTAGGCACTT
AGTCAGTTCCAAGTTGCGACGTGAACGAAAGGAGAACCTCTACATTTCCT
CGCCCCAGCAAATCATTGAGCAGCGTCACAAGGCGGCCACCATCTCATCA
GCATCAGTATCAGCCAAGACTAAAAGCTCAACCAAAAAGACTGCCGCCCA
CAAAATTTCTGACAGTGTTTATGCAGTCACCCATCCGGTAAAGCGTCCGA
ACAGCACCAATAGCAACAATACCCACCAAAGCAACAATAACAATAACAAT
GAAGGCGTGGATGACGAACTGCTGCACTTGACCGTTTTGAAGAACATTGA
CTTTAAGTTTGATGATAGCCAAGCATCTGAGGATTCCTGCAAGGCGAAAG
CATCTGCTCTTCCCGTAGCGAACGAATGCTTTGTACAGCCAAATCTGGAG
AAGGAGTACGAGGATCGCTTTCAAGCGGCGGAAAAGGCTAGTCGTCTTTT
GCAAAAGTATGCGACGCTGGCCAAAATCGGGCATTCGCCCAGCAAGGCGT
TGCCCGCACCAGCGCGTCTGGAACCCATGATTCAGTCTGTGGCCACGTCC
AATGAGTTGCAGCCCGAGGGAGGCACCATGAAAAAGTTCGCCTCCCTACC
ACGCTTCAAGAAAATTGACTTTTCGCCGCTGAAGATGAGACTCAATAGTG
TCCTCCAGAGAAATCCACCTTCGCCGCAGCACTAAAAGCTTTCTAGACCA
T
BS16451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sced-RB | 2469 | CG3273-PB | 1..2469 | 17..2485 | 12345 | 100 | Plus |
| sced-RA | 2469 | CG3273-PA | 1..2469 | 17..2485 | 12345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sced-RB | 3001 | CG3273-RB | 187..2657 | 17..2487 | 12355 | 100 | Plus |
| sced-RA | 3299 | CG3273-RA | 187..2657 | 17..2487 | 12355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6657512..6659982 | 17..2487 | 12355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:28:19 has no hits.
BS16451.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:24 Download gff for
BS16451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sced-RA | 185..2651 | 17..2483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:59 Download gff for
BS16451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sced-RA | 187..2653 | 17..2483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:44 Download gff for
BS16451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sced-RA | 185..2651 | 17..2483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:08 Download gff for
BS16451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sced-RA | 187..2653 | 17..2483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:08 Download gff for
BS16451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6657512..6659978 | 17..2483 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:59 Download gff for
BS16451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2545017..2547483 | 17..2483 | 100 | | Plus |
BS16451.3prime Sequence
854 bp (814 high quality bases) assembled on 2007-05-15
> BS16451.3prime
ATGGTCTAGAAAGCTTTTAGTGCTGCGGCGAAGGTGGATTTCTCTGGAGG
ACACTATTGAGTCTCATCTTCAGCGGCGAAAAGTCAATTTTCTTGAAGCG
TGGTAGGGAGGCGAACTTTTTCATGGTGCCTCCCTCGGGCTGCAACTCAT
TGGACGTGGCCACAGACTGAATCATGGGTTCCAGACGCGCTGGTGCGGGC
AACGCCTTGCTGGGCGAATGCCCGATTTTGGCCAGCGTCGCATACTTTTG
CAAAAGACGACTAGCCTTTTCCGCCGCTTGAAAGCGATCCTCGTACTCCT
TCTCCAGATTTGGCTGTACAAAGCATTCGTTCGCTACGGGAAGAGCAGAT
GCTTTCGCCTTGCAGGAATCCTCAGATGCTTGGCTATCATCAAACTTAAA
GTCAATGTTCTTCAAAACGGTCAAGTGCAGCAGTTCGTCATCCACGCCTT
CATTGTTATTGTTATTGTTGCTTTGGTGGGTATTGTTGCTATTGGTGCTG
TTCGGACGCTTTACCGGATGGGTGACTGCATAAACACTGTCAGAAATTTT
GTGGGCGGCAGTCTTTTTGGTTGAGCTTTTAGTCTTGGCTGATACTGATG
CTGATGAGATGGTGGCCGCCTTGTGACGCTGCTCAATGATTTGCTGGGGC
GAGGAAATGTAGAGGTTCTCCTTTCGTTCACGTCGCAACTTGGAACTGAC
TAAGTGCCTAAAACTAGGTCCATGTTCGGTGGGACTGCGTCGCTTTGACT
TGAGTGTGTCGCAGCTGTTCGGATAATAGGAGGGTATCTTGTCGTCCACA
CTGATAATCGACTTTCTTGGTGTCTGGTAGTAGTTTTCCTCCTCTGGCTT
CTGT
BS16451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3273-PA | 2469 | sced-RA | 1632..2469 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sced-RB | 3001 | CG3273-RB | 1818..2657 | 854..15 | 4200 | 100 | Minus |
| sced-RA | 3299 | CG3273-RA | 1818..2657 | 854..15 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6659143..6659982 | 854..15 | 4200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:32:25 has no hits.
BS16451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:44:13 Download gff for
BS16451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3273-PA | 1632..2469 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:29 Download gff for
BS16451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sced-RA | 1818..2665 | 8..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:38 Download gff for
BS16451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sced-RA | 1818..2665 | 8..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:38 Download gff for
BS16451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6659143..6659990 | 8..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:29 Download gff for
BS16451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2546648..2547495 | 8..854 | 99 | | Minus |
BS16451.5prime Sequence
778 bp (728 high quality bases) assembled on 2007-05-15
> BS16451.5prime
GAAGTTATCAGTCGACATGGACCACAACGAAATCTCCATGACTATGGACG
CCAAGCTGGATACGCACGATAAGCGACCAGTGGCGCTGCGTTACAAGACA
TGGACCCGCTGCCAAGTGAAAATAGAGGCCATTAAGTGTGTGCCCTGCTT
CCTGCGGCTCAGTTTCCAGGCCATGGAGACCGAGTCTCACTCCCAAGAGT
GTCACCCCGCTAAACCCATTAGCGTCTCCGTAAACGTTCCGGGCGTCAGC
TTGAGCCTGGCTACCTCGCGCACGAAGCAGCACTCGTACGGGCTGTTTTG
GACGCAAAATCGGCGGGACTGCTTCATCTATTTCGCCCTGGAAACGGAGA
CATCCTGCCGACGTCACATGAAATGGATGCGGAAGTCGATTAAGAATCTG
GAACTTTATCGCCAGGTCTTTCTAGAACAGCGCCGGCTGAGCAGGGGTCC
CGGAGGTCTGGGCCCACTGCCTAACCTGCCGGAAACCCTCGACGCTAGCG
CTCTCTCTCCGCGAGTCTCGCAAATATACGAGGAGATTTTTGACGGCAGC
CGCATCTCCCGCGTCTCAATCGCATCCGGCATTTACGAAGAGATGAAGCC
GTCAGTCATGGAGACTCCTTCACCGCCACCGCTGCCCGCACATCCTTACC
GTCAGCGAATAAACACTTTTGAGTGCGCCCAGCTTGGCGAGATTGCGCGG
TCCAGCACCAATCCCGAATCGGAGCTGGCCAAGAAGAAAAATACAAGAAC
ATGCTGGACAACCTGTTCGGGAGTTCCG
BS16451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3273-PA | 2469 | sced-RA | 1..722 | 17..738 | 3585 | 99.8 | Plus |
| CG3273-PA | 2469 | sced-RA | 724..761 | 739..776 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sced-RB | 3001 | CG3273-RB | 187..947 | 17..776 | 3765 | 99.7 | Plus |
| sced-RA | 3299 | CG3273-RA | 187..947 | 17..776 | 3765 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6657512..6658272 | 17..776 | 3740 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:30:18 has no hits.
BS16451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:27 Download gff for
BS16451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3273-PA | 1..764 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:35 Download gff for
BS16451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sced-RA | 187..950 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:26 Download gff for
BS16451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sced-RA | 187..950 | 17..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:26 Download gff for
BS16451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6657512..6658275 | 17..778 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:35 Download gff for
BS16451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2545017..2545780 | 17..778 | 99 | | Plus |
BS16451.pep Sequence
Translation from 16 to 2484
> BS16451.pep
MDHNEISMTMDAKLDTHDKRPVALRYKTWTRCQVKIEAIKCVPCFLRLSF
QAMETESHSQECHPAKPISVSVNVPGVSLSLATSRTKQHSYGLFWTQNRR
DCFIYFALETETSCRRHMKWMRKSIKNLELYRQVFLEQRRLSRGPGGLGP
LPNLPETLDASALSPRVSQIYEEIFDGSRISRVSIASGIYEEMKPSVMET
PSPPPLPAHPYRQRINTFECAQLGEIARSSTNPESELAKKKKYKNMLDNL
FGSSRQKRSGSTSEVANEPSDEVLPLYENAPTPEPVLPVKRTSQLNKSQR
NSFSSPDLSKLNLLDTFGEYFEAQNHESSMEINISLDESVIEPISRNEII
AQISSQLGKADSLESLNVSEQLPYNFNFSACNTSTINLIGSHGAVPQSNQ
LKKNKILHEDLTGYCVMAPILKATVKDLPPQPGGSTVSTSSGYSTGSYCS
STSSCNTEDQPTKTQIANESDIYEVMHGTSLNSTVGAAAAGFAEHLYENL
LAVKAAQELEAQPVGFGLSTSTPTESPLAPALPQKGTPKDKTLQQKPEEE
NYYQTPRKSIISVDDKIPSYYPNSCDTLKSKRRSPTEHGPSFRHLVSSKL
RRERKENLYISSPQQIIEQRHKAATISSASVSAKTKSSTKKTAAHKISDS
VYAVTHPVKRPNSTNSNNTHQSNNNNNNEGVDDELLHLTVLKNIDFKFDD
SQASEDSCKAKASALPVANECFVQPNLEKEYEDRFQAAEKASRLLQKYAT
LAKIGHSPSKALPAPARLEPMIQSVATSNELQPEGGTMKKFASLPRFKKI
DFSPLKMRLNSVLQRNPPSPQH*
BS16451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sced-PB | 822 | CG3273-PB | 1..822 | 1..822 | 4243 | 100 | Plus |
| sced-PA | 822 | CG3273-PA | 1..822 | 1..822 | 4243 | 100 | Plus |
