Clone Sequence Records
BS16452.complete Sequence
2069 bp assembled on 2009-12-07
GenBank Submission: KX804125
> BS16452.complete
GAAGTTATCAGTCGACATGTACGAGAAAACATTAAACATAGGAACTGCGA
AAGTTAATAATGCATATGAATGGCAAAAAGTGAGATACAACAACAAACCC
CAACCGACAACAACAGCAGCAGCTGCAGTTAAACCTAAACCACAACAACA
ACAAGTTCAAAAACAGAAAAATGCAACAAAAGCCGCGCCAGCAACAACTA
CAGCTGCAACAACAACAGCAACAGTGCCACCGTTAGCCGGCAACAGCGTT
ACCGTTAAGCAAGGCCCCAAAATCAAATTTGTTGGCAACGCGGCGCGCCG
CCAATCGTTGGCCCATCAAATCAAGCGAGCACATCGGCATTTACTGACCA
GTGGCGGTCAGGATAAGCAGCCGCAGCAAAAGCAAAAAACACAAGTGCAG
CCGCAGTCGGGCAAAACAGTTGCCAAACCGAAACAGAGGCAGCAGAAACA
ATTGTTCAAAAGTGATAAGGCGAAGGAGAAGTCCAGCAGGCAGCAGAGAA
AGCGAGCCGGCACCAGGAGCACTCGCAATCCGAGGACGCAATCGGAATCT
TCGGGCCTGTCATCCCGTTGGTGTTCCATCGAAGAGCAGTTGAACCTGCT
GGACGACCTGCTCTACTACTGCGATGAGGAGGCCGAACTGTATCTAGCCC
AGCTGTACGAAAGGTTCGAGACACTCCGGCGTAGCAGGAGTTCCTCGCCA
GTGAGCGATTTCTGGAGCGATTCCGACATGGAGCACGATGACTCCAGCAC
CAGTGGCACTGGCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCT
CGCTGAAGCGTCGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGC
CGTCCCAATGTGCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGG
CGACTCAAAGAGCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGG
AGGAGCAACCACAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGC
ACTTTAAGCCTGCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAA
CAGTCCCACGCCCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTA
ATCCGGCAGCAGCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACA
ACCACGTCCAAGAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGA
GAAATCGGACAAATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCA
AGAAGGAACGCAGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGC
CTGGCCACCGATCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGC
CGACGACGATGACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCA
GCGAGGCGGCCGAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGA
CGTTGTGCGGATTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTC
GGACACCATGATGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCA
TGAACACACAACTCAAACGGGCCGAATCCGAGGTTGCCGCTCTGAACCGT
CGCATCCAGTTGCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGG
CTCCGCCACAGCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCG
AACGTGCTCGCAAAATTCTTGAGAACCGCGCCCTTGCCGATGAAGAACGC
ATGGACGCTCTCGAGAATCAGCTGAAGGAAGCGCGTTTCCTTGCTGAGGA
GGCTGACAAGAAATACGATGAGGTGCAGCTAAAAACCAATTTGTCTTCTA
TTAAGCTAAGCAACAATAACAACAACAGTAACAGTAACAATATTGAAATC
AGTAAATCAGAATCATGCAATGCCAGCGATATTGGTGGCACCAACAACAA
TAACGCATCCAGAACTATTGCATCTGCTGCTGTTGGTGAAGAGACTTCCA
CCTTGTCCTCCACAAGCCACGAACACAACAACAATCCCAACAACGACACC
TGAAAGCTTTCTAGACCAT
BS16452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 2037 | CG4898-PH | 1..2037 | 17..2053 | 10185 | 100 | Plus |
Tm1-RE | 2136 | CG4898-PE | 332..1772 | 384..1824 | 7205 | 100 | Plus |
Tm1-RC | 1326 | CG4898-PC | 1..1326 | 728..2053 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 3054 | CG4898-RH | 278..2314 | 17..2053 | 10185 | 100 | Plus |
Tm1-RC | 2651 | CG4898-RC | 242..1911 | 384..2053 | 8350 | 100 | Plus |
Tm1-RI | 2501 | CG4898-RI | 92..1761 | 384..2053 | 8350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15288253..15289440 | 384..1571 | 5940 | 100 | Plus |
3R | 32079331 | 3R | 15287455..15287821 | 17..383 | 1835 | 100 | Plus |
3R | 32079331 | 3R | 15296590..15296939 | 1704..2053 | 1750 | 100 | Plus |
3R | 32079331 | 3R | 15295112..15295246 | 1570..1704 | 675 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2507 | 1852..1982 | 165 | 62.5 | Plus |
Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 156..195 | 406..367 | 119 | 77.5 | Minus |
BS16452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:00 Download gff for
BS16452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 1..2037 | 17..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:07 Download gff for
BS16452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 278..2313 | 17..2052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:37 Download gff for
BS16452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 278..2313 | 17..2052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:40 Download gff for
BS16452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 278..2313 | 17..2052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:30 Download gff for
BS16452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 278..2313 | 17..2052 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:30 Download gff for
BS16452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15287455..15287821 | 17..383 | 100 | -> | Plus |
3R | 15288253..15289439 | 384..1570 | 100 | -> | Plus |
3R | 15295113..15295246 | 1571..1704 | 100 | -> | Plus |
3R | 15296591..15296938 | 1705..2052 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:37 Download gff for
BS16452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11113177..11113543 | 17..383 | 100 | -> | Plus |
arm_3R | 11113975..11115161 | 384..1570 | 100 | -> | Plus |
arm_3R | 11120835..11120968 | 1571..1704 | 100 | -> | Plus |
arm_3R | 11122313..11122660 | 1705..2052 | 100 | | Plus |
BS16452.3prime Sequence
907 bp (825 high quality bases) assembled on 2007-05-15
> BS16452.3prime
ATGGTCTAGAAAGCTTTCAGGTGTCGTTGTTGGGATTGTTGTTGTGTTCG
TGGCTTGTGGAGGACAAGGTGGAAGTCTCTTCACCAACAGCAGCAGATGC
AATAGTTCTGGATGCGTTATTGTTGTTGGTGCCACCAATATCGCTGGCAT
TGCATGATTCTGATTTACTGATTTCAATATTGTTACTGTTACTGTTGTTG
TTATTGTTGCTTAGCTTAATAGAAGACAAATTGGTTTTTAGCTGCACCTC
ATCGTATTTCTTGTCAGCCTCCTCAGCAAGGAAACGCGCTTCCTTCAGCT
GATTCTCGAGAGCGTCCATGCGTTCTTCATCGGCAAGGGCGCGGTTCTCA
AGAATTTTGCGAGCACGTTCGCTCTCATCGGCGGCCTGAGAGGCTTCCGA
CAGCTTGGCTGTGGCGGAGCCCAGACGCTCCTCAGAGCGCTCCAAGTCTT
CTTCGAGCAACTGGATGCGACGGTTCAGAGCGGCAACCTCGGATTCGGCC
CGTTTGAGTTGTGTGTTCATGATGTTGTGCAGCTCGTTGCGGATGATGTT
GAACTTCATCATGGTGTCCGAACTGAAGATGGATCTGCCAAAGGCGAGTC
CCGGATAATCCGCACAACGTCCCTTGTTCCGTCGAGCCTCCCGCTCCGCC
ACAATCTCGGCCGCCTCGCTGGTGCATCGCAACTTGGACCATTCCGCCGC
TTGGTTGTCATCGTCGTCGGCCAGTGCGATGCCCTCATCGATGGCCCCGG
CACTGAGATCGGTGGCCAGGCTGTCGCTGCTTTGCTCCATGGGATTGGAT
CGTTTGCTGCGTTCCTTCTTGCCTGAAGATTTCTTCTTCCGGTCGGATTT
CTCAGATTTGTCCGATTTCTCTGACCTTTCACCCTTCTCCCGCTTCTTTT
TCTTGCT
BS16452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4898-PI | 1326 | Tm1-RI | 436..1326 | 907..17 | 4455 | 100 | Minus |
CG4898-PC | 1326 | Tm1-RC | 436..1326 | 907..17 | 4455 | 100 | Minus |
CG4898-PH | 2037 | Tm1-RH | 1147..2037 | 907..17 | 4455 | 100 | Minus |
CG4898-PE | 2136 | Tm1-RE | 1111..1772 | 907..246 | 3310 | 100 | Minus |
CG4898-PK | 1557 | Tm1-RK | 241..494 | 499..246 | 1270 | 100 | Minus |
CG4898-PJ | 858 | Tm1-RJ | 241..494 | 499..246 | 1270 | 100 | Minus |
CG4898-PD | 858 | Tm1-RD | 241..494 | 499..246 | 1270 | 100 | Minus |
CG4898-PB | 1020 | Tm1-RB | 403..656 | 499..246 | 1270 | 100 | Minus |
CG4898-PF | 1506 | Tm1-RF | 241..494 | 499..246 | 1270 | 100 | Minus |
CG4898-PG | 858 | Tm1-RG | 241..494 | 499..246 | 1270 | 100 | Minus |
CG4898-PL | 855 | Tm1-RL | 241..374 | 499..366 | 670 | 100 | Minus |
CG4898-PA | 759 | Tm1-RA | 145..278 | 499..366 | 670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 3054 | CG4898-RH | 1424..2314 | 907..17 | 4455 | 100 | Minus |
Tm1-RC | 2651 | CG4898-RC | 1021..1911 | 907..17 | 4455 | 100 | Minus |
Tm1-RI | 2501 | CG4898-RI | 871..1761 | 907..17 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15289032..15289440 | 907..499 | 2045 | 100 | Minus |
3R | 32079331 | 3R | 15296590..15296939 | 366..17 | 1750 | 100 | Minus |
3R | 32079331 | 3R | 15295112..15295246 | 500..366 | 675 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2507 | 218..88 | 165 | 62.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2523 | 211..20 | 158 | 58 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2641..2671 | 208..178 | 110 | 83.9 | Minus |
BS16452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:19 Download gff for
BS16452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4898-PH | 1147..2037 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:34 Download gff for
BS16452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 871..1764 | 12..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:35 Download gff for
BS16452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 871..1764 | 12..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:35 Download gff for
BS16452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15289032..15289439 | 500..907 | 100 | -> | Minus |
3R | 15295113..15295246 | 366..499 | 100 | -> | Minus |
3R | 15296591..15296942 | 12..365 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:34 Download gff for
BS16452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11114754..11115161 | 500..907 | 100 | -> | Minus |
arm_3R | 11120835..11120968 | 366..499 | 100 | -> | Minus |
arm_3R | 11122313..11122664 | 12..365 | 99 | | Minus |
BS16452.5prime Sequence
871 bp (846 high quality bases) assembled on 2007-05-15
> BS16452.5prime
GAAGTTATCAGTCGACATGTACGAGAAAACATTAAACATAGGAACTGCGA
AAGTTAATAATGCATATGAATGGCAAAAAGTGAGATACAACAACAAACCC
CAACCGACAACAACAGCAGCAGCTGCAGTTAAACCTAAACCACAACAACA
ACAAGTTCAAAAACAGAAAAATGCAACAAAAGCCGCGCCAGCAACAACTA
CAGCTGCAACAACAACAGCAACAGTGCCACCGTTAGCCGGCAACAGCGTT
ACCGTTAAGCAAGGCCCCAAAATCAAATTTGTTGGCAACGCGGCGCGCCG
CCAATCGTTGGCCCATCAAATCAAGCGAGCACATCGGCATTTACTGACCA
GTGGCGGTCAGGATAAGCAGCCGCAGCAAAAGCAAAAAACACAAGTGCAG
CCGCAGTCGGGCAAAACAGTTGCCAAACCGAAACAGAGGCAGCAGAAACA
ATTGTTCAAAAGTGATAAGGCGAAGGAGAAGTCCAGCAGGCAGCAGAGAA
AGCGAGCCGGCACCAGGAGCACTCGCAATCCGAGGACGCAATCGGAATCT
TCGGGCCTGTCATCCCGTTGGTGTTCCATCGAAGAGCAGTTGAACCTGCT
GGACGACCTGCTCTACTACTGCGATGAGGAGGCCGAACTGTATCTAGCCC
AGCTGTACGAAAGGTTCGAGACACTCCGGCGTAGCAGGAGTTCCTCGCCA
GTGAGCGATTTCTGGAGCGATTCCGACATGGAGCACGATGACTCCAGCAC
CAGTGGCACTGGCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCT
CGCTGAAGCGTCGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGC
CGTCCCCATGTGCCCATGTCC
BS16452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4898-PH | 2037 | Tm1-RH | 1..850 | 17..866 | 4225 | 99.8 | Plus |
CG4898-PE | 2136 | Tm1-RE | 332..814 | 384..866 | 2390 | 99.7 | Plus |
CG4898-PI | 1326 | Tm1-RI | 1..139 | 728..866 | 670 | 99.2 | Plus |
CG4898-PC | 1326 | Tm1-RC | 1..139 | 728..866 | 670 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 3054 | CG4898-RH | 278..1133 | 17..871 | 4240 | 99.8 | Plus |
Tm1-RC | 2651 | CG4898-RC | 242..730 | 384..871 | 2405 | 99.6 | Plus |
Tm1-RI | 2501 | CG4898-RI | 92..580 | 384..871 | 2405 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15288253..15288735 | 384..866 | 2400 | 99.8 | Plus |
3R | 32079331 | 3R | 15287455..15287821 | 17..383 | 1835 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 156..195 | 406..367 | 119 | 77.5 | Minus |
BS16452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:39 Download gff for
BS16452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4898-PH | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:55 Download gff for
BS16452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 278..1133 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:32 Download gff for
BS16452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RH | 278..1133 | 17..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:32 Download gff for
BS16452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15287455..15287821 | 17..383 | 100 | -> | Plus |
3R | 15288253..15288741 | 384..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:55 Download gff for
BS16452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11113177..11113543 | 17..383 | 100 | -> | Plus |
arm_3R | 11113975..11114463 | 384..871 | 99 | | Plus |
BS16452.pep Sequence
Translation from 16 to 2052
> BS16452.pep
MYEKTLNIGTAKVNNAYEWQKVRYNNKPQPTTTAAAAVKPKPQQQQVQKQ
KNATKAAPATTTAATTTATVPPLAGNSVTVKQGPKIKFVGNAARRQSLAH
QIKRAHRHLLTSGGQDKQPQQKQKTQVQPQSGKTVAKPKQRQQKQLFKSD
KAKEKSSRQQRKRAGTRSTRNPRTQSESSGLSSRWCSIEEQLNLLDDLLY
YCDEEAELYLAQLYERFETLRRSRSSSPVSDFWSDSDMEHDDSSTSGTGS
HTASNTSLVPASLKRRGHQHHPRFSGTRRPNVPNVQEILAALYRGDSKSA
LSNLRGETQPEEEQPQQQTEEVLPPSRSTLSLPLSESVTNSLGSNSPTPT
DESSVQDEGASNPAAALIAEDAAPPAGTTTSKSKKKKREKGERSEKSDKS
EKSDRKKKSSGKKERSKRSNPMEQSSDSLATDLSAGAIDEGIALADDDDN
QAAEWSKLRCTSEAAEIVAEREARRNKGRCADYPGLAFGRSIFSSDTMMK
FNIIRNELHNIMNTQLKRAESEVAALNRRIQLLEEDLERSEERLGSATAK
LSEASQAADESERARKILENRALADEERMDALENQLKEARFLAEEADKKY
DEVQLKTNLSSIKLSNNNNNSNSNNIEISKSESCNASDIGGTNNNNASRT
IASAAVGEETSTLSSTSHEHNNNPNNDT*
BS16452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-PH | 678 | CG4898-PH | 1..678 | 1..678 | 3421 | 100 | Plus |
Tm1-PE | 711 | CG4898-PE | 36..620 | 37..632 | 2420 | 84.6 | Plus |
Tm1-PC | 441 | CG4898-PC | 1..441 | 238..678 | 2205 | 100 | Plus |
Tm1-PI | 441 | CG4898-PI | 1..441 | 238..678 | 2205 | 100 | Plus |
Tm1-PO | 285 | CG4898-PO | 75..194 | 513..632 | 415 | 75.8 | Plus |