Clone BS16452 Report

Search the DGRC for BS16452

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptTm1-RH
Protein status:BS16452.pep: full length peptide match
Sequenced Size:2069

Clone Sequence Records

BS16452.complete Sequence

2069 bp assembled on 2009-12-07

GenBank Submission: KX804125

> BS16452.complete
GAAGTTATCAGTCGACATGTACGAGAAAACATTAAACATAGGAACTGCGA
AAGTTAATAATGCATATGAATGGCAAAAAGTGAGATACAACAACAAACCC
CAACCGACAACAACAGCAGCAGCTGCAGTTAAACCTAAACCACAACAACA
ACAAGTTCAAAAACAGAAAAATGCAACAAAAGCCGCGCCAGCAACAACTA
CAGCTGCAACAACAACAGCAACAGTGCCACCGTTAGCCGGCAACAGCGTT
ACCGTTAAGCAAGGCCCCAAAATCAAATTTGTTGGCAACGCGGCGCGCCG
CCAATCGTTGGCCCATCAAATCAAGCGAGCACATCGGCATTTACTGACCA
GTGGCGGTCAGGATAAGCAGCCGCAGCAAAAGCAAAAAACACAAGTGCAG
CCGCAGTCGGGCAAAACAGTTGCCAAACCGAAACAGAGGCAGCAGAAACA
ATTGTTCAAAAGTGATAAGGCGAAGGAGAAGTCCAGCAGGCAGCAGAGAA
AGCGAGCCGGCACCAGGAGCACTCGCAATCCGAGGACGCAATCGGAATCT
TCGGGCCTGTCATCCCGTTGGTGTTCCATCGAAGAGCAGTTGAACCTGCT
GGACGACCTGCTCTACTACTGCGATGAGGAGGCCGAACTGTATCTAGCCC
AGCTGTACGAAAGGTTCGAGACACTCCGGCGTAGCAGGAGTTCCTCGCCA
GTGAGCGATTTCTGGAGCGATTCCGACATGGAGCACGATGACTCCAGCAC
CAGTGGCACTGGCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCT
CGCTGAAGCGTCGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGC
CGTCCCAATGTGCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGG
CGACTCAAAGAGCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGG
AGGAGCAACCACAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGC
ACTTTAAGCCTGCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAA
CAGTCCCACGCCCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTA
ATCCGGCAGCAGCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACA
ACCACGTCCAAGAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGA
GAAATCGGACAAATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCA
AGAAGGAACGCAGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGC
CTGGCCACCGATCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGC
CGACGACGATGACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCA
GCGAGGCGGCCGAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGA
CGTTGTGCGGATTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTC
GGACACCATGATGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCA
TGAACACACAACTCAAACGGGCCGAATCCGAGGTTGCCGCTCTGAACCGT
CGCATCCAGTTGCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGG
CTCCGCCACAGCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCG
AACGTGCTCGCAAAATTCTTGAGAACCGCGCCCTTGCCGATGAAGAACGC
ATGGACGCTCTCGAGAATCAGCTGAAGGAAGCGCGTTTCCTTGCTGAGGA
GGCTGACAAGAAATACGATGAGGTGCAGCTAAAAACCAATTTGTCTTCTA
TTAAGCTAAGCAACAATAACAACAACAGTAACAGTAACAATATTGAAATC
AGTAAATCAGAATCATGCAATGCCAGCGATATTGGTGGCACCAACAACAA
TAACGCATCCAGAACTATTGCATCTGCTGCTGTTGGTGAAGAGACTTCCA
CCTTGTCCTCCACAAGCCACGAACACAACAACAATCCCAACAACGACACC
TGAAAGCTTTCTAGACCAT

BS16452.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 2037 CG4898-PH 1..2037 17..2053 10185 100 Plus
Tm1-RE 2136 CG4898-PE 332..1772 384..1824 7205 100 Plus
Tm1-RC 1326 CG4898-PC 1..1326 728..2053 6630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 278..2314 17..2053 10185 100 Plus
Tm1-RC 2651 CG4898-RC 242..1911 384..2053 8350 100 Plus
Tm1-RI 2501 CG4898-RI 92..1761 384..2053 8350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288253..15289440 384..1571 5940 100 Plus
3R 32079331 3R 15287455..15287821 17..383 1835 100 Plus
3R 32079331 3R 15296590..15296939 1704..2053 1750 100 Plus
3R 32079331 3R 15295112..15295246 1570..1704 675 100 Plus
Blast to na_te.dros performed 2014-11-28 01:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2375..2507 1852..1982 165 62.5 Plus
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 156..195 406..367 119 77.5 Minus

BS16452.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:00 Download gff for BS16452.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 1..2037 17..2053 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:07 Download gff for BS16452.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 278..2313 17..2052 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:37 Download gff for BS16452.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 278..2313 17..2052 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:40 Download gff for BS16452.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 278..2313 17..2052 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:30 Download gff for BS16452.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 278..2313 17..2052 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:30 Download gff for BS16452.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15287455..15287821 17..383 100 -> Plus
3R 15288253..15289439 384..1570 100 -> Plus
3R 15295113..15295246 1571..1704 100 -> Plus
3R 15296591..15296938 1705..2052 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:37 Download gff for BS16452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11113177..11113543 17..383 100 -> Plus
arm_3R 11113975..11115161 384..1570 100 -> Plus
arm_3R 11120835..11120968 1571..1704 100 -> Plus
arm_3R 11122313..11122660 1705..2052 100   Plus

BS16452.3prime Sequence

907 bp (825 high quality bases) assembled on 2007-05-15

> BS16452.3prime
ATGGTCTAGAAAGCTTTCAGGTGTCGTTGTTGGGATTGTTGTTGTGTTCG
TGGCTTGTGGAGGACAAGGTGGAAGTCTCTTCACCAACAGCAGCAGATGC
AATAGTTCTGGATGCGTTATTGTTGTTGGTGCCACCAATATCGCTGGCAT
TGCATGATTCTGATTTACTGATTTCAATATTGTTACTGTTACTGTTGTTG
TTATTGTTGCTTAGCTTAATAGAAGACAAATTGGTTTTTAGCTGCACCTC
ATCGTATTTCTTGTCAGCCTCCTCAGCAAGGAAACGCGCTTCCTTCAGCT
GATTCTCGAGAGCGTCCATGCGTTCTTCATCGGCAAGGGCGCGGTTCTCA
AGAATTTTGCGAGCACGTTCGCTCTCATCGGCGGCCTGAGAGGCTTCCGA
CAGCTTGGCTGTGGCGGAGCCCAGACGCTCCTCAGAGCGCTCCAAGTCTT
CTTCGAGCAACTGGATGCGACGGTTCAGAGCGGCAACCTCGGATTCGGCC
CGTTTGAGTTGTGTGTTCATGATGTTGTGCAGCTCGTTGCGGATGATGTT
GAACTTCATCATGGTGTCCGAACTGAAGATGGATCTGCCAAAGGCGAGTC
CCGGATAATCCGCACAACGTCCCTTGTTCCGTCGAGCCTCCCGCTCCGCC
ACAATCTCGGCCGCCTCGCTGGTGCATCGCAACTTGGACCATTCCGCCGC
TTGGTTGTCATCGTCGTCGGCCAGTGCGATGCCCTCATCGATGGCCCCGG
CACTGAGATCGGTGGCCAGGCTGTCGCTGCTTTGCTCCATGGGATTGGAT
CGTTTGCTGCGTTCCTTCTTGCCTGAAGATTTCTTCTTCCGGTCGGATTT
CTCAGATTTGTCCGATTTCTCTGACCTTTCACCCTTCTCCCGCTTCTTTT
TCTTGCT

BS16452.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4898-PI 1326 Tm1-RI 436..1326 907..17 4455 100 Minus
CG4898-PC 1326 Tm1-RC 436..1326 907..17 4455 100 Minus
CG4898-PH 2037 Tm1-RH 1147..2037 907..17 4455 100 Minus
CG4898-PE 2136 Tm1-RE 1111..1772 907..246 3310 100 Minus
CG4898-PK 1557 Tm1-RK 241..494 499..246 1270 100 Minus
CG4898-PJ 858 Tm1-RJ 241..494 499..246 1270 100 Minus
CG4898-PD 858 Tm1-RD 241..494 499..246 1270 100 Minus
CG4898-PB 1020 Tm1-RB 403..656 499..246 1270 100 Minus
CG4898-PF 1506 Tm1-RF 241..494 499..246 1270 100 Minus
CG4898-PG 858 Tm1-RG 241..494 499..246 1270 100 Minus
CG4898-PL 855 Tm1-RL 241..374 499..366 670 100 Minus
CG4898-PA 759 Tm1-RA 145..278 499..366 670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 1424..2314 907..17 4455 100 Minus
Tm1-RC 2651 CG4898-RC 1021..1911 907..17 4455 100 Minus
Tm1-RI 2501 CG4898-RI 871..1761 907..17 4455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15289032..15289440 907..499 2045 100 Minus
3R 32079331 3R 15296590..15296939 366..17 1750 100 Minus
3R 32079331 3R 15295112..15295246 500..366 675 100 Minus
Blast to na_te.dros performed 2015-02-12 00:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2375..2507 218..88 165 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2523 211..20 158 58 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2641..2671 208..178 110 83.9 Minus

BS16452.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:19 Download gff for BS16452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 1147..2037 17..907 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:34 Download gff for BS16452.3prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 871..1764 12..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:35 Download gff for BS16452.3prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 871..1764 12..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:35 Download gff for BS16452.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15289032..15289439 500..907 100 -> Minus
3R 15295113..15295246 366..499 100 -> Minus
3R 15296591..15296942 12..365 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:34 Download gff for BS16452.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11114754..11115161 500..907 100 -> Minus
arm_3R 11120835..11120968 366..499 100 -> Minus
arm_3R 11122313..11122664 12..365 99   Minus

BS16452.5prime Sequence

871 bp (846 high quality bases) assembled on 2007-05-15

> BS16452.5prime
GAAGTTATCAGTCGACATGTACGAGAAAACATTAAACATAGGAACTGCGA
AAGTTAATAATGCATATGAATGGCAAAAAGTGAGATACAACAACAAACCC
CAACCGACAACAACAGCAGCAGCTGCAGTTAAACCTAAACCACAACAACA
ACAAGTTCAAAAACAGAAAAATGCAACAAAAGCCGCGCCAGCAACAACTA
CAGCTGCAACAACAACAGCAACAGTGCCACCGTTAGCCGGCAACAGCGTT
ACCGTTAAGCAAGGCCCCAAAATCAAATTTGTTGGCAACGCGGCGCGCCG
CCAATCGTTGGCCCATCAAATCAAGCGAGCACATCGGCATTTACTGACCA
GTGGCGGTCAGGATAAGCAGCCGCAGCAAAAGCAAAAAACACAAGTGCAG
CCGCAGTCGGGCAAAACAGTTGCCAAACCGAAACAGAGGCAGCAGAAACA
ATTGTTCAAAAGTGATAAGGCGAAGGAGAAGTCCAGCAGGCAGCAGAGAA
AGCGAGCCGGCACCAGGAGCACTCGCAATCCGAGGACGCAATCGGAATCT
TCGGGCCTGTCATCCCGTTGGTGTTCCATCGAAGAGCAGTTGAACCTGCT
GGACGACCTGCTCTACTACTGCGATGAGGAGGCCGAACTGTATCTAGCCC
AGCTGTACGAAAGGTTCGAGACACTCCGGCGTAGCAGGAGTTCCTCGCCA
GTGAGCGATTTCTGGAGCGATTCCGACATGGAGCACGATGACTCCAGCAC
CAGTGGCACTGGCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCT
CGCTGAAGCGTCGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGC
CGTCCCCATGTGCCCATGTCC

BS16452.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4898-PH 2037 Tm1-RH 1..850 17..866 4225 99.8 Plus
CG4898-PE 2136 Tm1-RE 332..814 384..866 2390 99.7 Plus
CG4898-PI 1326 Tm1-RI 1..139 728..866 670 99.2 Plus
CG4898-PC 1326 Tm1-RC 1..139 728..866 670 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 278..1133 17..871 4240 99.8 Plus
Tm1-RC 2651 CG4898-RC 242..730 384..871 2405 99.6 Plus
Tm1-RI 2501 CG4898-RI 92..580 384..871 2405 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288253..15288735 384..866 2400 99.8 Plus
3R 32079331 3R 15287455..15287821 17..383 1835 100 Plus
Blast to na_te.dros performed 2015-02-10 15:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 156..195 406..367 119 77.5 Minus

BS16452.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:39 Download gff for BS16452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 1..856 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:55 Download gff for BS16452.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 278..1133 17..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:32 Download gff for BS16452.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 278..1133 17..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:32 Download gff for BS16452.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15287455..15287821 17..383 100 -> Plus
3R 15288253..15288741 384..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:55 Download gff for BS16452.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11113177..11113543 17..383 100 -> Plus
arm_3R 11113975..11114463 384..871 99   Plus

BS16452.pep Sequence

Translation from 16 to 2052

> BS16452.pep
MYEKTLNIGTAKVNNAYEWQKVRYNNKPQPTTTAAAAVKPKPQQQQVQKQ
KNATKAAPATTTAATTTATVPPLAGNSVTVKQGPKIKFVGNAARRQSLAH
QIKRAHRHLLTSGGQDKQPQQKQKTQVQPQSGKTVAKPKQRQQKQLFKSD
KAKEKSSRQQRKRAGTRSTRNPRTQSESSGLSSRWCSIEEQLNLLDDLLY
YCDEEAELYLAQLYERFETLRRSRSSSPVSDFWSDSDMEHDDSSTSGTGS
HTASNTSLVPASLKRRGHQHHPRFSGTRRPNVPNVQEILAALYRGDSKSA
LSNLRGETQPEEEQPQQQTEEVLPPSRSTLSLPLSESVTNSLGSNSPTPT
DESSVQDEGASNPAAALIAEDAAPPAGTTTSKSKKKKREKGERSEKSDKS
EKSDRKKKSSGKKERSKRSNPMEQSSDSLATDLSAGAIDEGIALADDDDN
QAAEWSKLRCTSEAAEIVAEREARRNKGRCADYPGLAFGRSIFSSDTMMK
FNIIRNELHNIMNTQLKRAESEVAALNRRIQLLEEDLERSEERLGSATAK
LSEASQAADESERARKILENRALADEERMDALENQLKEARFLAEEADKKY
DEVQLKTNLSSIKLSNNNNNSNSNNIEISKSESCNASDIGGTNNNNASRT
IASAAVGEETSTLSSTSHEHNNNPNNDT*

BS16452.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-PH 678 CG4898-PH 1..678 1..678 3421 100 Plus
Tm1-PE 711 CG4898-PE 36..620 37..632 2420 84.6 Plus
Tm1-PC 441 CG4898-PC 1..441 238..678 2205 100 Plus
Tm1-PI 441 CG4898-PI 1..441 238..678 2205 100 Plus
Tm1-PO 285 CG4898-PO 75..194 513..632 415 75.8 Plus