Clone Sequence Records
BS16453.complete Sequence
2978 bp assembled on 2009-12-08
GenBank Submission: KX801212
> BS16453.complete
GAAGTTATCAGTCGACATGGAAAAGTTGGACAAAATAAGGATGAGCCAAA
AACTGTCCTGCTGGCAGCATATTCTGACCACGTTGGGGACGAGTTCCAAG
ACAGAGCAGGAATGGAATACTTTTTTCAAGGGGTTCCTCGAAAGTTGGAG
AAAGCCCTACTGTATCCAAACCAGCTGCGATCCGAGCATACCGCTGAGAA
AGGAGCTCTTGGTCAGACCGAGGAAAGCCCTGCAAGAAAACCCGCATGGA
CCGGGGTCCACACTTCCAGAGTCCCCTGTTTTCCTGGAACCCATCAATTC
CACCGCGCCGCGTGAACATCCGAGTCCCAGCAAGTCACATTCAACAGGTT
CAACAGGTTGTGATCCTGGTAATGGAGAAAGATCTCCAAGTGTTTCGAAT
AAAAATTCTAAGTATAAAAATCCTGGTAACTCCAAATATGCTAAAATCTG
GAAGCGGAGTAATAATCATACGACTTCCATTTTCTCCAAAGCTCAAATTT
CCAAGCGCAGAGATAAACTCTCAAGTACGAAGAAGCGGCCAGATACATGT
GCACCAACTGATGATTCGCGCAAAAACCGAGAACCACGTGCTTGTGCTCC
CAACAAAAATATTTTCAAGACCAGAGAGACCAATGCTCCAAACTTGACGA
AAAATTCATGTGCTCTTCCAAATGTTCTTATATTAAGTCCCAACAGTGCG
TCTAAAATAACACAACGTGGACATTCTGTTGGTCAGACGCAAGATTACAA
AGCTTCTCCAGGCAAAATAATCAAGCGTGTTCCCAGATATAGTTTACAAT
GCTTAAAGAAAAAAACCGAGAAAGTACATAATAAAATAATGGACAAGCCT
AAGAATAAACAGCAGCCCCAGACTCCACCGCCATTTCTGCTCAATAACGA
GTACACGGAATCAAGCGACGACTCTGATGACCAACTGCCGCTTTCAGAAT
TGTCGCAAAAGATGAAAAGCAATAAACTGAATACCCTTTTCCTTTCTCGC
AATGAAGATTGTAGTCCTGCTCCTGAGAAAGTAAAGCTAAAAGGAGAACG
TCCCGCACAAAATAAGAAAGAGCAGCTCACATGGGAGCCATCAATATTAA
CTAATTTAACCGATCTAGGCAAGCAAGTAGCAGAGCCCCTTCGAAAATCA
GTTAAAAAATCTGCCAAACAGCAGAAACCACGAGTTAGAGCCCCTCCTCA
GGGAAAAAAAACGTTACCTCAATTGCAAACAGGTTTAAAGACTCAGGACA
AGCAATCAACTCACGAAATGATAAGTGAGCAGGCCAAAACCATCTCAGAA
GCATCTGGACAGCAGACATCTCAAGTCCAAAGTAGCTTGTCGCCAAACAA
TATAAGGAACAATAGCGTAAAATTAATAAGCGCCAAAACGTTGATGCCAG
CCCAGAGATCACAAGACTATTCCCCAAACAAAATGCAAGTGGGTCAGCCA
CTGGGTTTCGCCATAGAATTACCTAGTCCCGTGGACGGCAAGGAAGCCAG
CGTCGAGATCGATACCCAGCTGGTCCATACCAGCAAGTTCTTAGAGAATA
TGACAAGACCATCGACAGTGGAGGTACACAAATTCGATTTAATGGACATC
TTTATGGGAGAAAATGAAAAGTTGGACTATGAGTACGACGATGATGATGT
GCTCTCGGTGGCTGCCTCCTGGAATGGACTCGACGATGAGAATGTGCCTG
AGGACGAACCGAGGAAGGAAGCGAAAACTGCAGAGCAGTTACCCAAACCC
GAGCCTTCCACAGAAACACTTAAGCCAATCGAAAAAGAAAACGCACAAAA
AATGCAAAGCATAAAATCGTTTCAAATTCCTAAACTTAATGCTAAAAATC
TGAAGACACAGCCCTCCGTGATGCGTTCCATCTACGAGAATGAAGAGTTG
GAAAAGAATAAGGTGTTGGCAAAGCCTGCGCCGCCTTCACTAGTGCATCA
ACCCTTAGCTGAATCCAATCGTAACCAACGGGACGAAGCAACTGCTGCCC
GACGGGCCAAAGAAACATTCCCAGTATTTGCTCCACTATATCGTGTAGCA
CCAGAATCGGCAGCTACTCTGGTCAGCGCCAACAGCCAACAGGTTATACC
ACAAGTATACTTTTCCACCTCCAACCAAGATGGTGTTAATTGGATCAAAG
ATGTGTTTGGGATAAGGTGCATGCAAAGTGTAGACAACAAATGCATCTCT
ATTAATTGTGATCATACGATGAACAGTTTGGGTGAAGTACAGAAACGACT
GATGAGGATGGACGAGGACACTTTGCTGAGCCTATACCGACAAACGATAC
GAAGCTTTTTCCTGTTTCAGACCTACTACACCTCGTTCGTGGATATCTTC
AAATTTCGCAATCTCTGGCAGTATCTGCTAATCATGCTGGTCGACTGTCG
CTTGTACAAAAGCATTTCAGCTCCCCTACTGGCACACGTCTATGAAGCTC
TCAGTAAGTGCGGTATGCAGAAAGAGGCAGTGAAAAGGATAATGGAGCAT
GTGTGGTTGCCATGCAAAGCTCACAAATATCGGGATCTGATGCTAACGAC
TCTAAATATTCTGTCCAACGCCAACTGGGAGGATTATTGCGATAAGCTAA
CTCAGCTGGACAAGGATTATAACTTTGAGATACCCCATAAGAACTTGATT
ACCATACTTAAATCCTCCGTAGACTGCTCAGATAAATTTGCAAACGCCCT
TAAGTTGATCACCCTCCATCCAAATTCTATTCGTACCAACGAAACTATTA
TGTCGATTTTAAGCAACGCATCGAAAAGCTACAGCTACATGCATAATGAA
AGTGCGAGCGCAAGCCAGGGGCCGCCAGGAGCGGCCTCGTTTCTTGCACC
ACCTGCTGCTATTCAGCCTCCACACACCACAGTTCCTAATTTTGGATATT
TGCCAAACCCTAGCTTTCATTATTCCAATGAATATGCGATCAATATACAT
AATTTTGATTAAAAGCTTTCTAGACCAT
BS16453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| del-RC | 2946 | CG9252-PC | 1..2946 | 17..2962 | 14700 | 99.9 | Plus |
| del-RA | 2946 | CG9252-PA | 1..2946 | 17..2962 | 14700 | 99.9 | Plus |
| del-RB | 2937 | CG9252-PB | 1..2937 | 17..2962 | 14530 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| del-RC | 3292 | CG9252-RC | 184..3130 | 16..2962 | 14705 | 99.9 | Plus |
| del-RA | 3163 | CG9252-RA | 55..3001 | 16..2962 | 14705 | 99.9 | Plus |
| del-RB | 3154 | CG9252-RB | 55..2992 | 16..2962 | 14535 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21145299..21146885 | 2962..1376 | 7920 | 99.9 | Minus |
| 2L | 23513712 | 2L | 21146934..21148136 | 1381..179 | 5985 | 99.8 | Minus |
| 2L | 23513712 | 2L | 21148200..21148363 | 179..16 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:53:10 has no hits.
BS16453.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:43 Download gff for
BS16453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| del-RA | 185..3128 | 17..2960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:30 Download gff for
BS16453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| del-RA | 56..2999 | 17..2960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:46 Download gff for
BS16453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| del-RA | 185..3128 | 17..2960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:11 Download gff for
BS16453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| del-RA | 56..2999 | 17..2960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:11 Download gff for
BS16453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21145301..21146885 | 1376..2960 | 99 | <- | Minus |
| 2L | 21146940..21148136 | 179..1375 | 99 | <- | Minus |
| 2L | 21148201..21148362 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:30 Download gff for
BS16453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21145301..21146885 | 1376..2960 | 99 | <- | Minus |
| arm_2L | 21146940..21148136 | 179..1375 | 99 | <- | Minus |
| arm_2L | 21148201..21148362 | 17..178 | 100 | | Minus |
BS16453.3prime Sequence
921 bp (851 high quality bases) assembled on 2007-05-15
> BS16453.3prime
ATGGTCTAGAAAGCTTTTAATCAAAATTATGTATATTGATCGCATATTCA
TTGGAATAATGAAAGCTAGGGTTTGGCAAATATCCAAAATTAGGAACTGT
GGTGTGTGGAGGCTGAATAGCAGCAGGTGGTGCAAGAAACGAGGCCGCTC
CTGGCGGCCCCTGGCTTGCGCTCGCACTTTCATTATGCATGTAGCTGTAG
CTTTTCGATGCGTTGCTTAAAATCGACATAATAGTTTCGTTGGTACGAAT
AGAATTTGGATGGAGGGTGATCAACTTAAGGGCGTTTGCAAATTTATCTG
AGCAGTCTACGGAGGATTTAAGTATGGTAATCAAGTTCTTATGGGGTATC
TCAAAGTTATAATCCTTGTCCAGCTGAGTTAGCTTATCGCAATAATCCTC
CCAGTTGGCGTTGGACAGAATATTTAGAGTCGTTAGCATCAGATCCCGAT
ATTTGTGAGCTTTGCATGGCAACCACACATGCTCCATTATCCTTTTCACT
GCCTCTTTCTGCATACCGCACTTACTGAGAGCTTCATAGACGTGTGCCAG
TAGGGGAGCTGAAATGCTTTTGTACAAGCGACAGTCGACCAGCATGATTA
GCAGATACTGCCAGAGATTGCGAAATTTGAAGATATCCACGAACGAGGTG
TAGTAGGTCTGAAACAGGAAAAAGCTTCGTATCGTTTGTCGGTATAGGCT
CAGCAAAGTGTCCTCGTCCATCCTCATCAGTCGTTTCTGTACTTCACCCA
AACTGTTCATCGTATGATCACAATTAATAGAGATGCATTTGTTGTCTACA
CTTTGCATGCACCTTATCCCAAACACATCTTTGATCCAATTAACACCATC
TTGGGTTGGAGGTGGAAAAGTATACTTGTGGTATAACCTGTTGGCTGTTG
GCGCTGACCCAAGTAACTGCC
BS16453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9252-PA | 2946 | CG9252-RA | 2109..2946 | 854..17 | 4165 | 99.8 | Minus |
| CG9252-PA | 2946 | CG9252-RA | 2055..2110 | 909..854 | 280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| del-RC | 3292 | CG9252-RC | 2227..3130 | 921..17 | 4440 | 99.4 | Minus |
| del-RB | 3154 | CG9252-RB | 2089..2992 | 921..17 | 4440 | 99.4 | Minus |
| del-RA | 3163 | CG9252-RA | 2098..3001 | 921..17 | 4440 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21145299..21146202 | 17..921 | 4415 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:42:23 has no hits.
BS16453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:28 Download gff for
BS16453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9252-PA | 2043..2946 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:24 Download gff for
BS16453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| del-RA | 2098..3003 | 13..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:51 Download gff for
BS16453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| del-RA | 2098..3003 | 13..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:51 Download gff for
BS16453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21145297..21146202 | 13..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:24 Download gff for
BS16453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21145297..21146202 | 13..921 | 99 | | Plus |
BS16453.5prime Sequence
835 bp (734 high quality bases) assembled on 2007-05-15
> BS16453.5prime
GAAGTTATCAGTCGACATGGAAAAGTTGGACAAAATAAGGATGAGCCAAA
AACTGTCCTGCTGGCAGCATATTCTGACCACGTTGGGGACGAGTTCCAAG
ACAGAGCAGGAATGGAATACTTTTTTCAAGGGGTTCCTCGAAAGTTGGAG
AAAGCCCTACTGTATCCAAACCAGCTGCGATCCGAGCATACCGCTGAGAA
AGGAGCTCTTGGTCAGACCGAGGAAAGCCCTGCAAGAAAACCCGCATGGA
CCGGGGTCCACACTTCCAGAGTCCCCTGTTTTCCTGGAACCCATCAATTC
CACCGCGCCGCGTGAACATCCGAGTCCCAGCAAGTCACATTCAACAGGTT
CAACAGGTTGTGATCCTGGTAATGGAGAAAGATCTCCAAGTGTTTCGAAT
AAAAATTCTAAGTATAAAAATCCTGGTAACTCCAAATATGCTAAAATCTG
GAAGCGGAGTAATAATCATACGACTTCCATTTTCTCCAAAGCTCAAATTT
CCAAGCGCAGAGATAAACTCTCAAGTACGAAGAAGCGGCCAGATACATGT
GCACCAACTGATGATTCGCGCAAAAACCGAGAACCACGTGCTTGTGCTCC
CAACAAAAATATTTTCAAGACCAGAGAGACCAATGCTCCAAACTTGACGA
AAAATTCATGTGCTCTTCCAAATGTTCTTATATTAAGTCCCAACAGTGCG
TCTAANATAACACAACGTGGACATTCTGTTGGTCAGACGCAAGATTACAA
AGCTTCTCCAGGCAAAATAATCAAGCGTGTTCCCAGATATAGTTTACAAT
GCTTAAAGAAAAAAACCGAGAAAGTACATAATAAA
BS16453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9252-PA | 2946 | CG9252-RA | 1..819 | 17..835 | 4051 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| del-RC | 3292 | CG9252-RC | 184..1003 | 16..835 | 4074 | 99.8 | Plus |
| del-RB | 3154 | CG9252-RB | 55..874 | 16..835 | 4074 | 99.8 | Plus |
| del-RA | 3163 | CG9252-RA | 55..874 | 16..835 | 4074 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21147480..21148136 | 835..179 | 3259 | 99.7 | Minus |
| 2L | 23513712 | 2L | 21148200..21148363 | 179..16 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:52:46 has no hits.
BS16453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:47 Download gff for
BS16453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9252-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:40 Download gff for
BS16453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| del-RA | 50..871 | 11..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:41 Download gff for
BS16453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| del-RA | 50..871 | 11..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:41 Download gff for
BS16453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21147483..21148136 | 179..832 | 99 | <- | Minus |
| 2L | 21148201..21148368 | 11..178 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:40 Download gff for
BS16453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21147483..21148136 | 179..832 | 99 | <- | Minus |
| arm_2L | 21148201..21148368 | 11..178 | 98 | | Minus |
BS16453.pep Sequence
Translation from 16 to 2961
> BS16453.pep
MEKLDKIRMSQKLSCWQHILTTLGTSSKTEQEWNTFFKGFLESWRKPYCI
QTSCDPSIPLRKELLVRPRKALQENPHGPGSTLPESPVFLEPINSTAPRE
HPSPSKSHSTGSTGCDPGNGERSPSVSNKNSKYKNPGNSKYAKIWKRSNN
HTTSIFSKAQISKRRDKLSSTKKRPDTCAPTDDSRKNREPRACAPNKNIF
KTRETNAPNLTKNSCALPNVLILSPNSASKITQRGHSVGQTQDYKASPGK
IIKRVPRYSLQCLKKKTEKVHNKIMDKPKNKQQPQTPPPFLLNNEYTESS
DDSDDQLPLSELSQKMKSNKLNTLFLSRNEDCSPAPEKVKLKGERPAQNK
KEQLTWEPSILTNLTDLGKQVAEPLRKSVKKSAKQQKPRVRAPPQGKKTL
PQLQTGLKTQDKQSTHEMISEQAKTISEASGQQTSQVQSSLSPNNIRNNS
VKLISAKTLMPAQRSQDYSPNKMQVGQPLGFAIELPSPVDGKEASVEIDT
QLVHTSKFLENMTRPSTVEVHKFDLMDIFMGENEKLDYEYDDDDVLSVAA
SWNGLDDENVPEDEPRKEAKTAEQLPKPEPSTETLKPIEKENAQKMQSIK
SFQIPKLNAKNLKTQPSVMRSIYENEELEKNKVLAKPAPPSLVHQPLAES
NRNQRDEATAARRAKETFPVFAPLYRVAPESAATLVSANSQQVIPQVYFS
TSNQDGVNWIKDVFGIRCMQSVDNKCISINCDHTMNSLGEVQKRLMRMDE
DTLLSLYRQTIRSFFLFQTYYTSFVDIFKFRNLWQYLLIMLVDCRLYKSI
SAPLLAHVYEALSKCGMQKEAVKRIMEHVWLPCKAHKYRDLMLTTLNILS
NANWEDYCDKLTQLDKDYNFEIPHKNLITILKSSVDCSDKFANALKLITL
HPNSIRTNETIMSILSNASKSYSYMHNESASASQGPPGAASFLAPPAAIQ
PPHTTVPNFGYLPNPSFHYSNEYAINIHNFD*
BS16453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| del-PC | 981 | CG9252-PC | 1..981 | 1..981 | 5137 | 100 | Plus |
| del-PA | 981 | CG9252-PA | 1..981 | 1..981 | 5137 | 100 | Plus |
| del-PB | 978 | CG9252-PB | 1..978 | 1..981 | 5110 | 99.7 | Plus |
