Clone Sequence Records
BS16454.complete Sequence
3017 bp assembled on 2009-12-08
GenBank Submission: KX803369
> BS16454.complete
GAAGTTATCAGTCGACATGAACACGCCAGGTATAAGCCTCTTTCAGGGGG
CGGATGCCCTTAACATAAATTCTACACTGGACCGGCAGGAGGAGGAAGAG
GCGCTGCAGGATCAGAAACGACGCGAGGAAGAGCTTGGACGGATTATGGT
GAATGCCTTCGACGATCTGCTCGATGAAGAGAACACAATCGACTCGACGA
CGAATTACCAGTCGGAACTGGAACAGCCGCCAGTTCTACCCAACTACCCA
TCACATCCGCACCATAAACCGCTGCAGGACGATGCTCAGCGAGCCAACGA
GATCGAGATGCATCGCCTCCAGATCCTGCTGGAGTCTAAGAATAATGAGC
TGCAGAATGTCAACCAGGTGGCCAACGCTGCGCACAAAAAACTGGATGAC
TTACAAAAGCACCTATCCATCATGCAGGCTGAGCTAGACCGCGCCATTCG
CGAGAAGCAGAACACTCACGAGCTGTTGGTGGAGACCAAAGAGACGTGCT
CCAATAAGGACAGCGATCTGGACAAGCTGCGGTCGGAAAAGAAGCAGTTG
GAAGAAGATAACACGCGATTAGTTGGTCAATTAGAGGCCGCCAAGACCTT
GCTTACGGACGTCCAAAGCAAATACGACATGGTGCAGGCCAGTAAGCAGA
AGTGGGAGGAGCGGAACGCCGACCTACGTTTAAAGCAAATGGAGGAAGCG
CACCGAGCCCAGTCCGATCTTTTGCAGCAGCAACTCTGTCAGATGAAGGA
TCAGCTTGATCGCAAGCAAAATGAGTTGGATCAGATAAACTCGCGCTACA
ATGCTCTGCAGTCTGGTCACGAAACAATGCTCGTAGATAAGGCTGCCAAG
ATTAACGAGCTCAGTCAAGCTTTGGATGAGGCCCAAATGCGCTGCAACCA
ACTAAGTGCAAGACCCGATTTGCAGGCTGAAAATCGTCGGCAGCAACAGT
GCATCGTTGACTTGAAAGCCCGCATTGCCTATTTGGAGCAAACAGTCGCT
TCGCTCCATGAGCGCCTAAACGAAACCACCACGGAACTTGACCTGATAGA
TTCGGTTATTCAACAGCATCAGGCGGACGAATCGCCTACTAGTCGGCTAA
GTCAAATGGGTGGATCGCGCCTTGTTGGTAGCACACCGCTGAATCCTCTA
GACAGAGTCGGTCACATTAAGCAGGAGTTGTATCGAGCTCTGGGCAACCT
GAAGAACAAGCGGGAAGAAGTGCGACGCCTAGAGAAGCTCCTGGAGGAAC
GCAACCAGGAACTGCGCGTGCTGCGCGACCAGGAGAACCAATCCCTGGTT
CAGCTGGAAACCCTAAACGAAGGCAAAATGCGGTTGGAAAACAAAGTGAA
GGCAATGCAGCAGGAGTTGGAAGAGCAAAAACACAGATCACAGCAGGAGT
CAGATGTGCACTCACAGCTGAATTCCATTGTGGCCGAGAGGGATGCACTA
AGGGAAAAACGGCAGCAGATTGAAGAAGATCTGGAGCAACTAAAGCAGCA
GAACGAGAGCCTTCAAAGAAATTACGATCAGCTTTCGCAGGAAAATCGGC
AGTTGCGAACTCGAGAAACTGCAGACAACCTGCGCTTGGAGCTGGAACGC
CACAAGATTCTGTTGAGGGATTCCCAGAGCGAGGTCGAGCGGCTTAAGAA
ACTCTATTCTGACATCGCCACAGACAAAGAGTCATTAGGCTATGAATTGA
GAAAGCTGAGAGAATCGGACACGCTTAAGGAGTTGCAGGATCAACGCCAA
AACTTGGCCACTGTTCAGCGAAACTTGCAGCTGGCGGAGATGAAATCAGA
GGAGCTAAAAAAGCTTCTGGAAACGGAGAAACTCAGCCACGAACGTGATC
TGCAGGCCTTGCGCCAAAGGAGCGAGCGGGAAAAGCGCGAAGAAGCAGTT
GCGGTGGCCAAAGAAAGTTCCGAAAACTGCAGCAAGTGCATTGAAAGCAT
AGCAGAAATTACCAAGGCGGAAATTCAGTTGTTGAAACTCCAGAATGTGA
ACTCAATGCAGGCCAAGGAACTGAAAGAATTGGAACACGCGCTGGAGCAG
TCTAAAAATTTGCAAGCCGAGATGCAGGAAAAGATCGAGCTTTCAAACAA
GCAGGACGAGCTCATTAGCGATCTTAAGGAGAGGGCCAAGCAATTCGAGG
CGTACATTAGGCAGCAAGAGGAGCATAAGCAGCAGAATAAGTGTACGCCC
AGTCCGAAATCAAACTCAGTTTCCCCGTCTGATCCATCGCCCAAAGAGCT
CACCCAGAATCGGATAAGGTTGATCGAACAACGTGTTCGTGATGAGATGG
CCAAACTTTTTGCAGCAGAACTCAAGAGGTTTACTAACCGGCTGCAAAAA
TCTGAGGAGAGGAGCCAGTGCCTCCAAAGGGAATACCAAACGGTGTGTGC
AGAGCTGCAACAGCGGCAAACGGAGGTGGATCTTCTAAAGCAAACTATCC
TGGCAGAACGCGAGAATATCGATGAAATTCTGGCCGGCAGGGAAGAAAAG
CAAAAGGAAATGCTGCAGAAGTGCCGCCAGGAGCTGCAAGCGAAGAACCA
GCGAATTGCCGAACTGCTCCGAGAAGTGGAGGAGCAGCACGCCAGCATCG
ACTCCGAAAGGCAATCTATGAAGGCTGTGATGGCTCAGTGGGAGAAACAG
CGCCAGTCAGTCGACCAGGTGGAACACCACTGGCGCCAGCAGCTGGAAAG
CTTGCGTTCCACCCACGAAGAGGCGATGCGATCCGCACAGCAGCGATATC
AAAGTGCCAAGCGTACCGCCCACAATTACAAGTTGTATGCCGAGGACAAG
GAGGCGCACATGAAACGCGAGTATGAGCGCATTAAGCACGAGTACGAGCT
ATCACTCGCCAAGATCGAGGCGACCATGAACCAGCACCTGGAGCGGCGGA
GTCGGGAGAAGCACCGCGACAAAGAGAACGTGCCCAGCAATAGCAGCAGC
GACCCAATCACCAACTCAAATAGAAAGCCCAAAGGCAATGGTCACAGCTA
AAAGCTTTCTAGACCAT
BS16454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asl-RA | 2985 | CG2919-PA | 1..2985 | 17..3001 | 14925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asl-RA | 3187 | CG2919-RA | 98..3082 | 17..3001 | 14925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5604440..5606275 | 1967..132 | 9180 | 100 | Minus |
| 3R | 32079331 | 3R | 5603341..5604377 | 3001..1965 | 5185 | 100 | Minus |
| 3R | 32079331 | 3R | 5606330..5606446 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:53:05 has no hits.
BS16454.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:42 Download gff for
BS16454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asl-RA | 77..3059 | 17..2999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:28 Download gff for
BS16454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asl-RA | 98..3080 | 17..2999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:11 Download gff for
BS16454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2919-RA | 77..3059 | 17..2999 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:09 Download gff for
BS16454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asl-RA | 98..3080 | 17..2999 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:09 Download gff for
BS16454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5603343..5604375 | 1967..2999 | 100 | <- | Minus |
| 3R | 5604441..5606273 | 134..1966 | 100 | <- | Minus |
| 3R | 5606330..5606446 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:28 Download gff for
BS16454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1429065..1430097 | 1967..2999 | 100 | <- | Minus |
| arm_3R | 1430163..1431995 | 134..1966 | 100 | <- | Minus |
| arm_3R | 1432052..1432168 | 17..133 | 100 | | Minus |
BS16454.3prime Sequence
885 bp (790 high quality bases) assembled on 2007-05-15
> BS16454.3prime
ATGGTCTAGAAAGCTTTTAGCTGTGACCATTGCCTTTGGGCTTTCTATTT
GAGTTGGTGATTGGGTCGCTGCTGCTATTGCTGGGCACGTTCTCTTTGTC
GCGGTGCTTCTCCCGACTCCGCCGCTCCAGGTGCTGGTTCATGGTCGCCT
CGATCTTGGCGAGTGATAGCTCGTACTCGTGCTTAATGCGCTCATACTCG
CGTTTCATGTGCGCCTCCTTGTCCTCGGCATACAACTTGTAATTGTGGGC
GGTACGCTTGGCACTTTGATATCGCTGCTGTGCGGATCGCATCGCCTCTT
CGTGGGTGGAACGCAAGCTTTCCAGCTGCTGGCGCCAGTGGTGTTCCACC
TGGTCGACTGACTGGCGCTGTTTCTCCCACTGAGCCATCACAGCCTTCAT
AGATTGCCTTTCGGAGTCGATGCTGGCGTGCTGCTCCTCCACTTCTCGGA
GCAGTTCGGCAATTCGCTGGTTCTTCGCTTGCAGCTCCTGGCGGCACTTC
TGCAGCATTTCCTTTTGCTTTTCTTCCCTGCCGGCCAGAATTTCATCGAT
ATTCTCGCGTTCTGCCAGGATAGTTTGCTTTAGAAGATCCACCTCCGTTT
GCCGCTGTTGCAGCTCTGCACACACCGTTTGGTATTCCCTTTGGAGGCAC
TGGCTCCTCTCCTCAGATTTTTGCAGCCGGTTAGTAAACCTCTTGAGTTC
TGCTGCAAAAAGTTTGGCCATCTCATCACGAACACGTTGTTCGATCAACC
TTATCCGATTCTGGGTGAGCTCTTTGGGCGATGGATCAGACGGGGAAACT
GAGTTTGATTTCGGACTGGGCGTACACTTATTCTGCTGCTTATGCTCCTC
TTGCTGCCTAATGTACGCCTCGAATTGCTTGGCCT
BS16454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2919-PA | 2985 | CG2919-RA | 2118..2985 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asl-RA | 3187 | CG2919-RA | 2215..3082 | 884..17 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5603341..5604208 | 17..884 | 4340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:56:32 has no hits.
BS16454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:33 Download gff for
BS16454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2919-PA | 2116..2985 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:52 Download gff for
BS16454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asl-RA | 2213..3089 | 6..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:20 Download gff for
BS16454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asl-RA | 2213..3089 | 6..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:20 Download gff for
BS16454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5603334..5604208 | 6..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:52 Download gff for
BS16454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1429056..1429930 | 6..885 | 99 | | Plus |
BS16454.5prime Sequence
846 bp (779 high quality bases) assembled on 2007-05-15
> BS16454.5prime
GAAGTTATCAGTCGACATGAACACGCCAGGTATAAGCCTCTTTCAGGGGG
CGGATGCCCTTAACATAAATTCTACACTGGACCGGCAGGAGGAGGAAGAG
GCGCTGCAGGATCAGAAACGACGCGAGGAAGAGCTTGGACGGATTATGGT
GAATGCCTTCGACGATCTGCTCGATGAAGAGAACACAATCGACTCGACGA
CGAATTACCAGTCGGAACTGGAACAGCCGCCAGTTCTACCCAACTACCCA
TCACATCCGCACCATAAACCGCTGCAGGACGATGCTCAGCGAGCCAACGA
GATCGAGATGCATCGCCTCCAGATCCTGCTGGAGTCTAAGAATAATGAGC
TGCAGAATGTCAACCAGGTGGCCAACGCTGCGCACAAAAAACTGGATGAC
TTACAAAAGCACCTATCCATCATGCAGGCTGAGCTAGACCGCGCCATTCG
CGAGAAGCAGAACACTCACGAGCTGTTGGTGGAGACCAAAGAGACGTGCT
CCAATAAGGACAGCGATCTGGACAAGCTGCGGTCGGAAAAGAAGCAGTTG
GAAGAAGATAACACGCGATTAGTTGGTCAATTAGAGGCCGCCAAGACCTT
GCTTACGGACGTCCAAAGCAAATACGACATGGTGCAGGCCAGTAAGCAGA
AGTGGGAGGAGCGGAACGCCGACCTACGTTTAAAGCAAATGGAGGAAGCG
CACCGAGCCCAGTCCGATCTTTTGCAGCAGCAACTCTGTCAGATGAAGGA
TCAGCTTGATCGCAAGCAAAATGAGTTGGATCAGATAAACTCGCGCTACA
ATGCTCTGCAGTCTGGTCACGAAACAATGCTCGTAGATAAAGCTGC
BS16454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2919-PA | 2985 | CG2919-RA | 1..830 | 17..846 | 4125 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asl-RA | 3187 | CG2919-RA | 98..927 | 17..846 | 4135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5605561..5606275 | 846..132 | 3560 | 99.9 | Minus |
| 3R | 32079331 | 3R | 5606330..5606446 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:46:32 has no hits.
BS16454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:52 Download gff for
BS16454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2919-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:47 Download gff for
BS16454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asl-RA | 90..927 | 10..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:37:24 Download gff for
BS16454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asl-RA | 90..927 | 10..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:37:24 Download gff for
BS16454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5605561..5606273 | 134..846 | 99 | <- | Minus |
| 3R | 5606330..5606454 | 10..133 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:47 Download gff for
BS16454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1432052..1432176 | 10..133 | 97 | | Minus |
| arm_3R | 1431283..1431995 | 134..846 | 99 | <- | Minus |
BS16454.pep Sequence
Translation from 16 to 3000
> BS16454.pep
MNTPGISLFQGADALNINSTLDRQEEEEALQDQKRREEELGRIMVNAFDD
LLDEENTIDSTTNYQSELEQPPVLPNYPSHPHHKPLQDDAQRANEIEMHR
LQILLESKNNELQNVNQVANAAHKKLDDLQKHLSIMQAELDRAIREKQNT
HELLVETKETCSNKDSDLDKLRSEKKQLEEDNTRLVGQLEAAKTLLTDVQ
SKYDMVQASKQKWEERNADLRLKQMEEAHRAQSDLLQQQLCQMKDQLDRK
QNELDQINSRYNALQSGHETMLVDKAAKINELSQALDEAQMRCNQLSARP
DLQAENRRQQQCIVDLKARIAYLEQTVASLHERLNETTTELDLIDSVIQQ
HQADESPTSRLSQMGGSRLVGSTPLNPLDRVGHIKQELYRALGNLKNKRE
EVRRLEKLLEERNQELRVLRDQENQSLVQLETLNEGKMRLENKVKAMQQE
LEEQKHRSQQESDVHSQLNSIVAERDALREKRQQIEEDLEQLKQQNESLQ
RNYDQLSQENRQLRTRETADNLRLELERHKILLRDSQSEVERLKKLYSDI
ATDKESLGYELRKLRESDTLKELQDQRQNLATVQRNLQLAEMKSEELKKL
LETEKLSHERDLQALRQRSEREKREEAVAVAKESSENCSKCIESIAEITK
AEIQLLKLQNVNSMQAKELKELEHALEQSKNLQAEMQEKIELSNKQDELI
SDLKERAKQFEAYIRQQEEHKQQNKCTPSPKSNSVSPSDPSPKELTQNRI
RLIEQRVRDEMAKLFAAELKRFTNRLQKSEERSQCLQREYQTVCAELQQR
QTEVDLLKQTILAERENIDEILAGREEKQKEMLQKCRQELQAKNQRIAEL
LREVEEQHASIDSERQSMKAVMAQWEKQRQSVDQVEHHWRQQLESLRSTH
EEAMRSAQQRYQSAKRTAHNYKLYAEDKEAHMKREYERIKHEYELSLAKI
EATMNQHLERRSREKHRDKENVPSNSSSDPITNSNRKPKGNGHS*
BS16454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asl-PA | 994 | CG2919-PA | 1..994 | 1..994 | 4983 | 100 | Plus |
| CLIP-190-PS | 1653 | CG5020-PS | 570..1423 | 89..910 | 356 | 20.6 | Plus |
| zip-PH | 1964 | CG15792-PH | 851..1728 | 96..977 | 352 | 22.3 | Plus |
| zip-PG | 1971 | CG15792-PG | 843..1720 | 96..977 | 352 | 22.3 | Plus |
| zip-PE | 1971 | CG15792-PE | 843..1720 | 96..977 | 352 | 22.3 | Plus |
| CLIP-190-PS | 1653 | CG5020-PS | 556..1541 | 109..984 | 333 | 20.8 | Plus |
| zip-PG | 1971 | CG15792-PG | 948..1952 | 15..992 | 319 | 20.1 | Plus |
| zip-PH | 1964 | CG15792-PH | 956..1911 | 15..938 | 314 | 19.8 | Plus |
| CLIP-190-PS | 1653 | CG5020-PS | 701..1572 | 21..859 | 264 | 22.1 | Plus |
| zip-PH | 1964 | CG15792-PH | 1079..1931 | 22..808 | 255 | 22.3 | Plus |
| CLIP-190-PS | 1653 | CG5020-PS | 377..1233 | 139..983 | 238 | 20.3 | Plus |
| zip-PH | 1964 | CG15792-PH | 813..1388 | 410..964 | 228 | 19.7 | Plus |
| zip-PG | 1971 | CG15792-PG | 805..1380 | 410..964 | 228 | 19.7 | Plus |
