Clone Sequence Records
BS16457.complete Sequence
2672 bp assembled on 2009-12-07
GenBank Submission: KX805165
> BS16457.complete
GAAGTTATCAGTCGACATGCTTCTCAAGGTATTTTTACTGGTCTTCATCG
CCACCCACCACTTGGTAGACTCAGCGGGTCCCCTTTCCAATATAGCCAGC
GAAAGTAAACCAAAATCGTTCGAGGAGATTTTGCCTTCGGCGGTTCCCTT
TGAGACCTCACACAAACATCCGGGTGCCGGGGAGTGGGTGGAGGGATTTC
AAACCTCCCATAAAATAAGCATAAGGGCCACCGATTCCGCTGACTATTCG
ATGAATCTGCTGCCTACTAAAGAGCGACCCGAATTGAACCCCGTTTTGAG
TGCACTTATCAACGAAGATGTTATGAAGAGCATCGAGGCCAAAAGAGCCA
TAGAAGAAGAGGAGCTGGCCGAGGTTAGGCGTGAAATTGAGCAGGCCGCC
GTGTTAGAGTTGGCCCAGAAGAGGGGCTTTACCACTACTGAGACACCTGC
TCTTCTGTTGACGACTTTGCCCACAGCTGGCAAGAAGCTCGATAACTTGG
ATGAGGACATAGTCCTGGATCCTCACGAAGATTTTATCAACCAAAATTTT
GCCCTGGAGAGTGCGGGTAGTGAGAACAGCAAGAAATCCCGAATAGAGAT
TAAAAAGGGACCCAATGGCCAGGACTACGAGTACGAGTATGTCTATTACT
ATGAAGAGGACGATGACTCAAGCAAGGTGGATCCATCTGCAGAGCCCGAC
ACGCGTGGTAAGACTAGATATACCAATATCGAGAGGAGCACGACGGCCAC
TCCGAGTGGAAATAGCCTACAGAGTGACAAGGCCAAAGGAAGATCATCTG
ATACCTCTGAAGATATAGAGGCTGAACGGCTTCCGATGATCACTCGGTTT
CCCAGTCGTGGCAAGAACATTGAAGTGCCACCAACAGCAGCTCTTGATTC
TTTGGAAATCGCTGCCGAGCGCAAGAAGATTAGTGTTAAGCGCCCCAGTT
TGGAGTTGGTGGATAGTGCTACCTTCAACACGGATGAGAAACAGACCAAG
GCAGCTCGCAAGGGTGAAAATGAATTAAAACCAGTAATTGCTATCGAACA
GGAGGAGGCAGCCAGAAAGAAAATGCAACAGGTTAAGGAGGAGCAGGCAA
GGAAAGAGAAGGAGACCGAAATGTCAATCGATCAGGAGGATTTTGAGCAG
ACCACGCCGTCCATGGAGAAGGCCGCTCTAGATCTTTATGCCATATTGAC
CAATGAAAACCTCAATAACGAACAAACTACTGTAATTCCGGATACCGTAG
GTTCAGAGGGTTTCACCACTTTGGCAACAGAAACTGCAAGTACTGATGAG
GATGAGGCCGGTGTCATGACCACGCTGATTAATGAGATTTCATCGAGTAC
CAGCACCACTACGACGGCAGCAACAACCACCACGACTACAACAACAACGG
AACCACCTACAACAACCTCCACCACTACAACAACCACGGCTGCTCCCTCT
CTTTTTGGTGGAAGGAGAGCCGGCTTGAGTGGTTTGGGCGGACGTAATCG
CTTTAAGTTAACCAGGGCTGAAGGTGGCAGCACCACCACTAGCACCACTG
AGGCATCGGTGGCTGCAGAAACAAACAAGACTGGTAGAAATCGTTTTTCG
CGCCCCTCGATAGGAGGGCGTTCTCGACCCGGAGCTCGTACCACCACAGC
ACCAGATGCCACATCAGTAGCTGCCCCTGACGCCGAGGAGGGTATAGTGG
TTGCCAAGGAAGTCAAGCCTGTCAGTACGTCCTTCGCACGAGGAAGACCT
CGCAACCGCTTCAGCTTGCGCGTCTCAACCACGACTGCGCGACCCAGCGA
GGAATCTCCAGCTGAAGATGACGCCCCCGCCGAATCTTCATCAACGACTA
CAAGAAGCACATTGAGGGGTCGTCCCGGACTTGGATTACGTGGACGCAGT
CGTACAACCACTACAAAGGCACCCGCTAGTTCAGAGGGTGCCGAAGCGGT
AGAGCCTAATGCCACTGCTAGTTCCGAAGACGTCAAGTCCGGGTTGATTT
CGCCTTCTACCGGGGAATCAGGGCGTCCGTCCCGTTTTAACATTCACCGC
GCTGGTAGCAATCGTCTGTTATCCCGCGGAAAACTGGGAAGATCGGGAGT
AAGCACGGAAGCACCCAAGGAAAGTCAAACTGCCGAGGATTCCGCCGCCG
AAAGCAGTAGTCACCTCAACGACGTCAAAGAGGAGCAGATGTCCGCTGGC
GAGTTTAGCGAAAAGACGAACGAAGCAGGTGATTCCGCTGCCGTCGTTCC
AGCGGCTCCTGTATCCGGGTTAAATCGTCTTAGAACTCGACCACGTCTCA
ACGCCCTAACGCATAAGACTGATGCGGTTAAGCCTAAGGCATCCGCAGCC
CCCGCCCCCGCGCCAAGGAAGATTAATCCTCTGTTGGCAAAGCGACGACT
CCAACTGGGAGCCACTTCCACCACAGAGTCCCCCGCTGAGGAGGAGCATT
TAGCGCTGGACTCCTCCGCGGAGCAGTCCGACAAAGAGGAGTCGTTTGCC
GGAGGAAGCAACGAGACGGGCGGAGAAGGCCCCGGAAAGCCGGAGCATGA
AACTACGGAAGCGACGGAGGCAACAACTAAGCAGCAGCCCCGCGGTCTTG
GACTTTTAGGACAGCGTCGTCGTCTGCCGCTCCGCAAACCCGGAACGATC
CTGTAAAAGCTTTCTAGACCAT
BS16457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3777-RE | 2640 | CG3777-PE | 1..2640 | 17..2656 | 13200 | 100 | Plus |
CG3777-RD | 2640 | CG3777-PD | 1..2640 | 17..2656 | 13200 | 100 | Plus |
CG3777-RC | 2640 | CG3777-PC | 1..2640 | 17..2656 | 13200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3777-RE | 3428 | CG3777-RE | 260..2901 | 17..2658 | 13210 | 100 | Plus |
CG3777-RD | 4130 | CG3777-RD | 660..3301 | 17..2658 | 13210 | 100 | Plus |
CG3777-RC | 3402 | CG3777-RC | 234..2875 | 17..2658 | 13210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 346149..347707 | 31..1589 | 7795 | 100 | Plus |
X | 23542271 | X | 348647..349324 | 1749..2426 | 3390 | 100 | Plus |
X | 23542271 | X | 349440..349675 | 2423..2658 | 1180 | 100 | Plus |
X | 23542271 | X | 348080..348238 | 1590..1748 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:01:01 has no hits.
BS16457.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:28 Download gff for
BS16457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-RC | 230..2867 | 17..2654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:41 Download gff for
BS16457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-RA | 208..2845 | 17..2654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:48 Download gff for
BS16457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-RC | 230..2867 | 17..2654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:01 Download gff for
BS16457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-RC | 234..2871 | 17..2654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:01 Download gff for
BS16457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 346149..347707 | 31..1589 | 100 | -> | Plus |
X | 348080..348238 | 1590..1748 | 100 | -> | Plus |
X | 348647..349324 | 1749..2426 | 100 | -> | Plus |
X | 349444..349671 | 2427..2654 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:41 Download gff for
BS16457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 240182..241740 | 31..1589 | 100 | -> | Plus |
arm_X | 242113..242271 | 1590..1748 | 100 | -> | Plus |
arm_X | 242680..243357 | 1749..2426 | 100 | -> | Plus |
arm_X | 243477..243704 | 2427..2654 | 100 | | Plus |
BS16457.3prime Sequence
887 bp (849 high quality bases) assembled on 2007-05-15
> BS16457.3prime
ATGGTCTAGAAAGCTTTTACAGGATCGTTCCGGGTTTGCGGAGCGGCAGA
CGACGACGCTGTCCTAAAAGTCCAAGACCGCGGGGCTGCTGCTTAGTTGT
TGCCTCCGTCGCTTCCGTAGTTTCATGCTCCGGCTTTCCGGGGCCTTCTC
CGCCCGTCTCGTTGCTTCCTCCGGCAAACGACTCCTCTTTGTCGGACTGC
TCCGCGGAGGAGTCCAGCGCTAAATGCTCCTCCTCAGCGGGGGACTCTGT
GGTGGAAGTGGCTCCCAGTTGGAGTCGTCGCTTTGCCAACAGAGGATTAA
TCTTCCTTGGCGCGGGGGCGGGGGCTGCGGATGCCTTAGGCTTAACCGCA
TGCAGTCTTATGCGTTAGGGCGTTGAGACGTGGTCGAGTTCTAAGACGAT
TTAACCCGGATACAGGAGCCGCTGGAACGACGGCAGCGGAATCACCTGCT
TCGTTCGTCTTTTCGCTAAACTCGCCAGCGGACATCTGCTCCTCTTTGAC
GTCGTTGAGGTGACTACTGCTTTCGGCGGCGGAATCCTCGGCAGTTTGAC
TTTCCTTGGGTGCTTCCGTGCTTACTCCCGATCTTCCCAGTTTTCCGCGG
GATAACAGACGATTGCTACCAGCGCGGTGAATGTTAAAACGGGACGGACG
CCCTGATTCCCCGGTAGAAGGCGAAATCAACCCGGACTTGACGTCTTCGG
AACTAGCAGTGGCATTAGGCTCTACCGCTTCGGCACCCTCTGAACTAGCG
GGTGCCTTTGTAGTGGTTGTACGACTGCGTCCACGTAATCCAAGTCCGGG
ACGACCCCTCAATGTGCTTCTTGTAGTCGTTGATGAAGATTCGGCGGGGG
CCTCATCTTCAGCTGGAGATCCCTCGCTGGCTCGCGC
BS16457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3777-PB | 2640 | CG3777-RB | 1771..2305 | 887..353 | 2600 | 99.4 | Minus |
CG3777-PA | 2640 | CG3777-RA | 1771..2305 | 887..353 | 2600 | 99.4 | Minus |
CG3777-PC | 2640 | CG3777-RC | 1771..2305 | 887..353 | 2600 | 99.4 | Minus |
CG3777-PB | 2640 | CG3777-RB | 2306..2640 | 351..17 | 1675 | 100 | Minus |
CG3777-PA | 2640 | CG3777-RA | 2306..2640 | 351..17 | 1675 | 100 | Minus |
CG3777-PC | 2640 | CG3777-RC | 2306..2640 | 351..17 | 1675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3777-RE | 3428 | CG3777-RE | 2030..2901 | 887..15 | 4295 | 99.5 | Minus |
CG3777-RD | 4130 | CG3777-RD | 2430..3301 | 887..15 | 4295 | 99.5 | Minus |
CG3777-RC | 3402 | CG3777-RC | 2004..2875 | 887..15 | 4295 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 348685..349324 | 887..247 | 3110 | 99.4 | Minus |
X | 23542271 | X | 349440..349675 | 250..15 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:13:42 has no hits.
BS16457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:44:18 Download gff for
BS16457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-PC | 1771..2640 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:45 Download gff for
BS16457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-RA | 1978..2849 | 15..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:36 Download gff for
BS16457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-RC | 2004..2875 | 15..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:36 Download gff for
BS16457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 348685..349324 | 247..887 | 99 | -> | Minus |
X | 349444..349675 | 15..246 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:45 Download gff for
BS16457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 242718..243357 | 247..887 | 99 | -> | Minus |
arm_X | 243477..243708 | 15..246 | 100 | | Minus |
BS16457.5prime Sequence
853 bp (783 high quality bases) assembled on 2007-05-15
> BS16457.5prime
GAAGTTATCAGTCGACATGCTTCTCAAGGTATTTTTACTGGTCTTCATCG
CCACCCACCACTTGGTAGACTCAGCGGGTCCCCTTTCCAATATAGCCAGC
GAAAGTAAACCAAAATCGTTCGAGGAGATTTTGCCTTCGGCGGTTCCCTT
TGAGACCTCACACAAACATCCGGGTGCCGGGGAGTGGGTGGAGGGATTTC
AAACCTCCCATAAAATAAGCATAAGGGCCACCGATTCCGCTGACTATTCG
ATGAATCTGCTGCCTACTAAAGAGCGACCCGAATTGAACCCCGTTTTGAG
TGCACTTATCAACGAAGATGTTATGAAGAGCATCGAGGCCAAAAGAGCCA
TAGAAGAAGAGGAGCTGGCCGAGGTTAGGCGTGAAATTGAGCAGGCCGCC
GTGTTAGAGTTGGCCCAGAAGAGGGGCTTTACCACTACTGAGACACCTGC
TCTTCTGTTGACGACTTTGCCCACAGCTGGCAAGAAGCTCGATAACTTGG
ATGAGGACATAGTCCTGGATCCTCACGAAGATTTTATCAACCAAAATTTT
GCCCTGGAGAGTGCGGGTAGTGAGAACAGCAAGAAATCCCGAATAGAGAT
TAAAAAGGGACCCAATGGCCAGGACTACGAGTACGAGTATGTCTATTACT
ATGAAGAGGACGATGACTCAAGCAAGGTGGATCCATCTGCAGAGCCCGAC
ACGCGTGGTAAGACTAGATATACCAATATCGAGAGGAGCACGACGGCCAC
TCCGAGTGGAAATAGCCTACAGAGTGACAAGGCCAAAGGAAGATCATCTG
ATACCTCTGAAGATATAGAGGCTGAACGGCTTCCGATGATCACTCGGTTT
CCC
BS16457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3777-PB | 2640 | CG3777-RB | 1..837 | 17..853 | 4185 | 100 | Plus |
CG3777-PA | 2640 | CG3777-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
CG3777-PC | 2640 | CG3777-RC | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3777-RE | 3428 | CG3777-RE | 260..1096 | 17..853 | 4185 | 100 | Plus |
CG3777-RD | 4130 | CG3777-RD | 660..1496 | 17..853 | 4185 | 100 | Plus |
CG3777-RC | 3402 | CG3777-RC | 234..1070 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 346149..346971 | 31..853 | 4115 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:04:54 has no hits.
BS16457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:31 Download gff for
BS16457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-PC | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:42 Download gff for
BS16457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-RA | 200..1044 | 7..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:35:25 Download gff for
BS16457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3777-RC | 226..1070 | 7..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:35:25 Download gff for
BS16457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 346149..346971 | 31..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:42 Download gff for
BS16457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 240182..241004 | 31..853 | 100 | | Plus |
BS16457.pep Sequence
Translation from 16 to 2655
> BS16457.pep
MLLKVFLLVFIATHHLVDSAGPLSNIASESKPKSFEEILPSAVPFETSHK
HPGAGEWVEGFQTSHKISIRATDSADYSMNLLPTKERPELNPVLSALINE
DVMKSIEAKRAIEEEELAEVRREIEQAAVLELAQKRGFTTTETPALLLTT
LPTAGKKLDNLDEDIVLDPHEDFINQNFALESAGSENSKKSRIEIKKGPN
GQDYEYEYVYYYEEDDDSSKVDPSAEPDTRGKTRYTNIERSTTATPSGNS
LQSDKAKGRSSDTSEDIEAERLPMITRFPSRGKNIEVPPTAALDSLEIAA
ERKKISVKRPSLELVDSATFNTDEKQTKAARKGENELKPVIAIEQEEAAR
KKMQQVKEEQARKEKETEMSIDQEDFEQTTPSMEKAALDLYAILTNENLN
NEQTTVIPDTVGSEGFTTLATETASTDEDEAGVMTTLINEISSSTSTTTT
AATTTTTTTTTEPPTTTSTTTTTTAAPSLFGGRRAGLSGLGGRNRFKLTR
AEGGSTTTSTTEASVAAETNKTGRNRFSRPSIGGRSRPGARTTTAPDATS
VAAPDAEEGIVVAKEVKPVSTSFARGRPRNRFSLRVSTTTARPSEESPAE
DDAPAESSSTTTRSTLRGRPGLGLRGRSRTTTTKAPASSEGAEAVEPNAT
ASSEDVKSGLISPSTGESGRPSRFNIHRAGSNRLLSRGKLGRSGVSTEAP
KESQTAEDSAAESSSHLNDVKEEQMSAGEFSEKTNEAGDSAAVVPAAPVS
GLNRLRTRPRLNALTHKTDAVKPKASAAPAPAPRKINPLLAKRRLQLGAT
STTESPAEEEHLALDSSAEQSDKEESFAGGSNETGGEGPGKPEHETTEAT
EATTKQQPRGLGLLGQRRRLPLRKPGTIL*
BS16457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3777-PE | 879 | CG3777-PE | 1..879 | 1..879 | 4394 | 100 | Plus |
CG3777-PD | 879 | CG3777-PD | 1..879 | 1..879 | 4394 | 100 | Plus |
CG3777-PC | 879 | CG3777-PC | 1..879 | 1..879 | 4394 | 100 | Plus |
CG3777-PA | 879 | CG3777-PA | 1..879 | 1..879 | 4394 | 100 | Plus |
CG3777-PB | 879 | CG3777-PB | 1..879 | 1..879 | 4394 | 100 | Plus |