Clone Sequence Records
BS16460.5prime Sequence
844 bp (786 high quality bases) assembled on 2007-05-15
> BS16460.5prime
GAAGTTATCAGTCGACATGAGCTCGGACCAAGGGCCACTCTTGGCCAAAA
GAGGACGGCATGGCCTGCTGGCCGCTCTCCTGCTGATTTGCCTCGCCGGC
CAGACGGCGGCCCAGTCCAATTATGTGCAGCATGGAGACAGCGGTAACTA
CACTACCAACGGATTGCCCGAGGAGGCGACACTGGATGGCAAGGTTACCA
AGCTGGACGACATCAGTCCACTGATTTTCCTCAACCGAACGAAGGCCGCT
CTCAATTGCGCCGCCGGTTCCATGCAGGTTGATCTCAAGTTCAACGATCC
GTTCCATGGCATTATCCAGGCTGACTATGATCGCAGTAGTGCGTGCCGCG
TTAGTGGAAAGGGAGCACTCAGCTACCGACTCGAGTTGCCGCTCAAGGGA
TGCGGTACCATCCAGAACCCCACCCGTGTGTTCACCAACAACATCATTGT
TCGATTCCACGCCAATCTGGAAATGGACGGCGACGAGATCATCACGATAG
TCTGCCGCTATCCACCTCCAGTGCCCTCGCTTCCACCTGCACTGCCGGCT
CCAATCCTGAACCCGATCGCCACGAGTTCTGTGCTGCAACCGCCGCTGAA
GAGCATCCAAATCCTGATGATCATCTGCGCCATCATGTTCCTCACGCTCC
TCCTCCTGGGACTCGCCGTTTCCTACTACTGCCTGCGCAGTCGCTCCATT
CCGGTGGTGCGTCGCCTGCCGATGAGCATGGGCAGCGGATCGGAGATCAC
CAAGCTGAGTGGCAGCAGTGTGGGCAACATCAGTGCCTTCGAGGGCGTAA
AGATCCCCAGAGCCCATGCCGCCCTGCANGCGGTATATAGCTCA
BS16460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2467-PA | 2892 | CG2467-RA | 1..828 | 17..844 | 4121 | 99.8 | Plus |
| CG2467-PB | 2892 | CG2467-RB | 1..828 | 17..844 | 4121 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pot-RB | 4354 | CG2467-RB | 288..1119 | 13..844 | 4134 | 99.8 | Plus |
| pot-RA | 3444 | CG2467-RA | 253..1084 | 13..844 | 4134 | 99.8 | Plus |
| pot-RC | 4319 | CG2467-RC | 253..1084 | 13..844 | 4134 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11910727..11911015 | 844..556 | 1434 | 99.7 | Minus |
| X | 23542271 | X | 11912229..11912411 | 195..13 | 900 | 99.5 | Minus |
| X | 23542271 | X | 11911071..11911212 | 555..414 | 710 | 100 | Minus |
| X | 23542271 | X | 11911286..11911426 | 415..275 | 705 | 100 | Minus |
| X | 23542271 | X | 11911492..11911580 | 279..191 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:46:47 has no hits.
BS16460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:41:58 Download gff for
BS16460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2467-PB | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:49 Download gff for
BS16460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pot-RC | 251..1083 | 10..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:29 Download gff for
BS16460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pot-RC | 251..1083 | 10..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:29 Download gff for
BS16460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11910728..11911015 | 556..843 | 99 | <- | Minus |
| X | 11911071..11911210 | 416..555 | 100 | <- | Minus |
| X | 11911286..11911423 | 278..415 | 100 | <- | Minus |
| X | 11911494..11911577 | 194..277 | 100 | <- | Minus |
| X | 11912231..11912413 | 10..193 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:49 Download gff for
BS16460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11804761..11805048 | 556..843 | 99 | <- | Minus |
| arm_X | 11805104..11805243 | 416..555 | 100 | <- | Minus |
| arm_X | 11805319..11805456 | 278..415 | 100 | <- | Minus |
| arm_X | 11805527..11805610 | 194..277 | 100 | <- | Minus |
| arm_X | 11806264..11806446 | 10..193 | 98 | | Minus |
BS16460.complete Sequence
2924 bp assembled on 2010-01-09
GenBank Submission: KX806413
> BS16460.complete
GAAGTTATCAGTCGACATGAGCTCGGACCAAGGGCCACTCTTGGCCAAAA
GAGGACGGCATGGCCTGCTGGCCGCTCTCCTGCTGATTTGCCTCGCCGGC
CAGACGGCGGCCCAGTCCAATTATGTGCAGCATGGAGACAGCGGTAACTA
CACTACCAACGGATTGCCCGAGGAGGCGACACTGGATGGCAAGGTTACCA
AGCTGGACGACATCAGTCCACTGATTTTCCTCAACCGAACGAAGGCCGCT
CTCAATTGCGCCGCCGGTTCCATGCAGGTTGATCTCAAGTTCAACGATCC
GTTCCATGGCATTATCCAGGCTGACTATGATCGCAGTAGTGCGTGCCGCG
TTAGTGGAAAGGGAGCACTCAGCTACCGACTCGAGTTGCCGCTCAAGGGA
TGCGGTACCATCCAGAACCCCACCCGTGTGTTCACCAACAACATCATTGT
TCGATTCCACGCCAATCTGGAAATGGACGGCGACGAGATCATCACGATAG
TCTGCCGCTATCCACCTCCAGTGCCCTCGCTTCCACCTGCACTGCCGGCT
CCAATCCTGAACCCGATCGCCACGAGTTCTGTGCTGCAACCGCCGCTGAA
GAGCATCCAAATCCTGATGATCATCTGCGCCATCATGTTCCTCACGCTCC
TCCTCCTGGGACTCGCCGTTTCCTACTACTGCCTGCGCAGTCGCTCCATT
CCGGTGGTGCGTCGCCTGCCGATGAGCATGGGCAGCGGATCGGAGATCAC
CAAGCTGAGTGGCAGCAGTGTGGGCAACATCAGTGCCTTCGAGGGCGTAA
AGATCCCCAGAGCCCATGCCGCCCTGCAGGCGGTATATAGCTCATCGGGC
AGCGAGGGTGCACTGATACCCTCTGACTATCCCAGTGAATCGCACTCGGA
GATCGAGGAGATCGATACGAGATCGCTGCCCTTTAGCTCAGCGGGTAGCT
TCGAGAATCGCGCCTTTGTCCATGAAACCTCGAGCATCTACAGTGATCAC
TATGCTCCGGCTCAGGAGATGCCGTCTGCGAATGCTGTGATGACCACCAC
CTCGGTGACCCGTCACTCGATTCCCATACAGGAGGCGGTGGCAGCCGTTG
ATTCGCCCAAATTCGATGTACAGGTGCGTGTGAAGAAGTCACCACCGCCA
CCTCCATCCCCAGTGACCTCGGATACCGAGAGTGTGGCCACTTTGCGTCC
GGATCGCAATAATCTTTCGACCATCATGGAGGCCTACGAGGATCGCGAGA
GCGTGCTCACCATGGACTCCCTGCCGCCGCAGGTGGAGACGATGCACTCG
CAGTTCACCTATGTTCCCGAACTCCATCCGGCACCGCAAGTGCCGCAGTC
TATTCCCCTCCCGCCGCCGGCTGTCGTCGAGCCCAAGTTCTCGGTGTACA
CACGAACCCATCACGAGGTGGTGGATGGTCGCCCAGAGACCTGGTCCGAT
TACACCGACGGCCCGGCGCCAAGTGAGATCACGGACTTATCATCCGAGGC
ACCTGACATGACGGTGGAAACGATGCACTACTACGAGGATGAGTTTATGC
CGGCGGTGGAGCCACCGGTGACCTCGCACACCGTCGACGATGTCTATCTG
CGCACGGTGACCGAGAAGAAGACCATCGAGGACATCGAGAGCCACAAGCG
TAGGGTTACGGAGTACAAGAGCAAGCCGAGGGCACCACTGCCGCCGCCAC
CACCGCCACCGCAAGTGGATCCCAAGTTCGATGTGCGGGTGCGCAACTAT
CCTGGCGACCGGGAGCAGCAGCTGTGGGAGAACTTCTCGGACATTTCCAG
TGCCTCCGGACTGACCCTTACGCCCAAGATGGAGCGCAGCGAGCTAAGTT
TGCCGCCGGCGGAGCTACCAGCTCAGATCCACGACAACAAGCTAAAGCTG
ACCAGTCCGGAGCTGGTGGGCAACATGAAGCCGATCGAGGTGCCGCCACA
GGACAAGGATGTGCCCAATTGGGACGTGCTCATCCGTATCCTAGAGGAGC
CCGAGATGTCGGAGGTGGGCCAGGACGACGTAAGCTCCGTGCACAATCTG
ACCTACGACGATCGGGCCAAGTGGAAGGAGATCATCACTACCCAATCCTC
GCTGCGCACCATGCTCACCGAGGCGGTGGTGAGGGAGGACTTCGAGCGGA
TCCGTCAGGACACCCGGTACGAACGCATGTTCGAGCCACAGACCTGGGAC
GTGATCATTCGCATCCTGGCTCCGCCCGGCGACGATGATCCCGACGTGGA
GATGCGCACGCCAAGGCGCGGCAAGAAGGCATCGCCGCAGCCATGGGACA
CCCGTTCCCGTCGCAGCTCGCTGCCCACGCTCTACGAGTACGACAGCGAT
GGTGGATCGAGTGTGCGGACCATCCGCAACGATCCGGGCATGTCCGGCGT
GCTGATGACAGGAGCAGGACCTGGCGGCGCACCTGGTGGACCCTTCAATC
TGCAGCGATCGCGTCGCAGTTCGCGCACCTCCTACCAGACCGACCACAAC
GACTTCCGCTCGATGTCCGAGGTGACCGTCGACTTTGGGCGCCCGCACCA
GGTGGATCATCCGGACAACGTGAGCGACGCCAGCAGCTACTATCGTATGC
AGTACTACGACGACGACGACCGGCGCTCCTTCCATCGCTCCCTCAGCCAT
CCCTCGCTGGCCCGATCAGCCAGCGAGTTCACCGAGCACTGGACCGCGCC
CGACGAGATGGAGGTCTCCTCCCCGGAGGGCACACCGCACACTCGCCGCG
CCCGACAGCCCCTATCGTCGCAACAAGTAGCCTTAGCCACCGGCAGGAGC
GGCGAGCGTGTGCTGTCCCAGACCCAGACGCAGAGTGAATACGTGGAGAC
CCATCGAAGGGTCTACCACGCGGAGAAGGAGATGCCCTTGCCTCCACGCA
AGTGGTAAAAGCTTTCTAGACCAT
BS16460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pot-RB | 2892 | CG2467-PB | 1..2892 | 17..2908 | 14460 | 100 | Plus |
| pot-RA | 2892 | CG2467-PA | 1..2892 | 17..2908 | 14460 | 100 | Plus |
| pot-RC | 2892 | CG2467-PC | 1..2892 | 17..2908 | 14460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pot-RB | 4354 | CG2467-RB | 288..3184 | 13..2909 | 14470 | 100 | Plus |
| pot-RA | 3444 | CG2467-RA | 253..3149 | 13..2909 | 14470 | 100 | Plus |
| pot-RC | 4319 | CG2467-RC | 253..3149 | 13..2909 | 14470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11908813..11911015 | 2758..556 | 11015 | 100 | Minus |
| X | 23542271 | X | 11912229..11912411 | 195..13 | 900 | 99.5 | Minus |
| X | 23542271 | X | 11908579..11908732 | 2909..2756 | 770 | 100 | Minus |
| X | 23542271 | X | 11911071..11911212 | 555..414 | 710 | 100 | Minus |
| X | 23542271 | X | 11911286..11911426 | 415..275 | 705 | 100 | Minus |
| X | 23542271 | X | 11911492..11911580 | 279..191 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:54:41 has no hits.
BS16460.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:53 Download gff for
BS16460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pot-RB | 192..3081 | 17..2906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:11 Download gff for
BS16460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pot-RC | 257..3146 | 17..2906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:18 Download gff for
BS16460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pot-RB | 192..3081 | 17..2906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:32 Download gff for
BS16460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pot-RC | 257..3146 | 17..2906 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:32 Download gff for
BS16460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11908582..11908729 | 2759..2906 | 100 | <- | Minus |
| X | 11908813..11911015 | 556..2758 | 100 | <- | Minus |
| X | 11911071..11911210 | 416..555 | 100 | <- | Minus |
| X | 11911286..11911423 | 278..415 | 100 | <- | Minus |
| X | 11911494..11911577 | 194..277 | 100 | <- | Minus |
| X | 11912231..11912407 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:11 Download gff for
BS16460.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11802615..11802762 | 2759..2906 | 100 | <- | Minus |
| arm_X | 11802846..11805048 | 556..2758 | 100 | <- | Minus |
| arm_X | 11805104..11805243 | 416..555 | 100 | <- | Minus |
| arm_X | 11805319..11805456 | 278..415 | 100 | <- | Minus |
| arm_X | 11805527..11805610 | 194..277 | 100 | <- | Minus |
| arm_X | 11806264..11806440 | 17..193 | 100 | | Minus |
BS16460.pep Sequence
Translation from 16 to 2907
> BS16460.pep
MSSDQGPLLAKRGRHGLLAALLLICLAGQTAAQSNYVQHGDSGNYTTNGL
PEEATLDGKVTKLDDISPLIFLNRTKAALNCAAGSMQVDLKFNDPFHGII
QADYDRSSACRVSGKGALSYRLELPLKGCGTIQNPTRVFTNNIIVRFHAN
LEMDGDEIITIVCRYPPPVPSLPPALPAPILNPIATSSVLQPPLKSIQIL
MIICAIMFLTLLLLGLAVSYYCLRSRSIPVVRRLPMSMGSGSEITKLSGS
SVGNISAFEGVKIPRAHAALQAVYSSSGSEGALIPSDYPSESHSEIEEID
TRSLPFSSAGSFENRAFVHETSSIYSDHYAPAQEMPSANAVMTTTSVTRH
SIPIQEAVAAVDSPKFDVQVRVKKSPPPPPSPVTSDTESVATLRPDRNNL
STIMEAYEDRESVLTMDSLPPQVETMHSQFTYVPELHPAPQVPQSIPLPP
PAVVEPKFSVYTRTHHEVVDGRPETWSDYTDGPAPSEITDLSSEAPDMTV
ETMHYYEDEFMPAVEPPVTSHTVDDVYLRTVTEKKTIEDIESHKRRVTEY
KSKPRAPLPPPPPPPQVDPKFDVRVRNYPGDREQQLWENFSDISSASGLT
LTPKMERSELSLPPAELPAQIHDNKLKLTSPELVGNMKPIEVPPQDKDVP
NWDVLIRILEEPEMSEVGQDDVSSVHNLTYDDRAKWKEIITTQSSLRTML
TEAVVREDFERIRQDTRYERMFEPQTWDVIIRILAPPGDDDPDVEMRTPR
RGKKASPQPWDTRSRRSSLPTLYEYDSDGGSSVRTIRNDPGMSGVLMTGA
GPGGAPGGPFNLQRSRRSSRTSYQTDHNDFRSMSEVTVDFGRPHQVDHPD
NVSDASSYYRMQYYDDDDRRSFHRSLSHPSLARSASEFTEHWTAPDEMEV
SSPEGTPHTRRARQPLSSQQVALATGRSGERVLSQTQTQSEYVETHRRVY
HAEKEMPLPPRKW*
BS16460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pot-PB | 963 | CG2467-PB | 1..963 | 1..963 | 5037 | 100 | Plus |
| pot-PA | 963 | CG2467-PA | 1..963 | 1..963 | 5037 | 100 | Plus |
| pot-PC | 963 | CG2467-PC | 1..963 | 1..963 | 5037 | 100 | Plus |
