Clone BS16462 Report

Search the DGRC for BS16462

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptpum-RE
Protein status:BS16462.pep: full length peptide match
Sequenced Size:2840

Clone Sequence Records

BS16462.complete Sequence

2840 bp assembled on 2009-12-08

GenBank Submission: KX802005

> BS16462.complete
GAAGTTATCAGTCGACATGGTGGTTTTAGAAACTGCCAGCGCCCTTTTGG
GCGGCCCGTATGCCCAGGGCGCTCCCGCCCTGAAAATGGTGCAGAAACGC
TACATTGGATTACATCACTGGCTGGGACCAATCCGCTCCAAGGAGCTAAA
GGAGCATATTGTAAGTGACGACGTGCTTTCGCTCGCTTTTAACCACAATC
AACAACTGTTTCGCTCGCAGAATCCGGGCCTAGCAGCAGTTGCCACAAAT
GCAGCGGCCGCAGCAGCAGCCGCAGCAGCTGCCACATCGGCAGCGAGTGC
TGCGGCAGCGGTGGGCGCACCACCCGTTCCCAACGGATCGCTGCAGCAGT
CGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGATG
CACATGGCGGCCGCGTCGCAACAATTTTTGGCCGCCCAGCAGCAGGCGCA
AAATGCGGCCTATGCCGCCCAACAGGCCACGTCCTACGTCATCAATCCGG
GCCAGGAGGCTGCCCCGTATATGGGCATGATTGCCGCCGCCCAGATGCCG
TACTATGGCGTAGCACCATGGGGCATGTATCCGGGCAATCTGATTCCGCA
ACAGGGAACGCAGCCGCGCCGCCCCCTCACCCCCTCGCAGCAGGGTGCCG
AGAATCAGCCGTATCAGGTCATCCCGGCATTCCTCGATCACACGGGCTCC
TTGCTGATGGGAGGACCTCGCACCGGGACGCCGATGCGTCTGGTTAGCCC
CGCCCCCGTTCTGGTGCCCCCGGGCGCTACCCGTGCCGGCCCCCCGCCCC
CGCAGGGCCCACAGCTGTATCAGCCGCAGCCGCAGACGGCCCAACAGAAT
CTCTACTCGCAGCAGAATGGATCCAGTGTCGGAGGCCTCGCCTTGAACAC
GAGCTCGTTGACGGGTCGCCGCGACTCCTTCGACCGCAGCACCTCCGCCT
TCAGTCCCTCGACCATGGACTACACCAGCAGCGGTGTGGCAGCGGCCGCC
AATGCGGTGAACAGCACAGTGGCCCAGGCAGCAGCAGCTGCCGCAGCAGC
CGCCGCAGCGCGTGGCAAGTGGCCGGGAGCGATGTCGGGAGCGGCCAGTG
GAGCCTACGGAGCCCTGGGAGCGGGCAATGCTTCGGCCAGTCCCCTGGGC
GCACCAATCACGCCGCCGCCATCGGCGCAATCCTGTCTCCTGGGCAGTCG
GGCACCTGGAGCCGAGTCCCGCCAGCGGCAGCAGCAACAACAGCAGCTGG
CCGCCGTTGGTCTGCCGGCGACTGCAGCAGCTGCTCAGGCAGCGGTGGCC
GCGGCTGCCAACAATATGTTCGGATCCAACAGCTCGATCTTCTCGAATCC
CCTGGCCATTCCGGGTACCGCAGCTGTGGCAGCTGCAGCGGCAGCAGCAG
CGGCCGCCAACTCGCGTCAGGTGGCTGCCACGGCAGCGGCAGCAGCGGCT
GTGGCAGCAGCAGCCGGCGGAGTGGGAGGTGCCCCACAGCCAGGAAGATC
TCGCCTTCTCGAAGATTTCCGCAACCAGCGGTATCCAAATCTTCAGCTAC
GCGATCTCGCTAACCACATTGTGGAGTTCTCACAGGATCAGCACGGCTCG
CGGTTTATCCAACAGAAGTTGGAGCGGGCCACCGCCGCCGAGAAGCAAAT
GGTGTTCAGCGAGATCCTGGCGGCAGCCTATAGCCTGATGACCGATGTCT
TTGGCAACTATGTCATCCAGAAGTTCTTTGAGTTCGGCACTCCCGAGCAG
AAGAACACGCTGGGCATGCAGGTCAAGGGTCATGTGCTGCAGCTGGCGCT
GCAAATGTATGGCTGCCGAGTGATTCAGAAGGCTCTGGAGAGCATCTCGC
CGGAGCAGCAGCAGGAAATCGTCCACGAACTGGACGGACATGTGCTGAAA
TGCGTCAAGGATCAGAATGGCAATCATGTGGTGCAAAAGTGCATTGAGTG
CGTGGACCCCGTGGCGCTGCAGTTCATCATCAATGCTTTCAAGGGTCAGG
TTTACTCGCTAAGCACCCATCCGTATGGATGCCGGGTGATCCAGAGAATC
CTTGAGCATTGCACTGCCGAACAGACCACGCCCATTTTGGACGAACTGCA
TGAGCACACCGAACAGTTGATTCAGGACCAATATGGCAACTATGTTATTC
AGCATGTGCTTGAACACGGCAAGCAGGAGGATAAGTCGATTCTTATCAAC
AGCGTGCGCGGCAAAGTTCTGGTGCTATCACAGCACAAGTTCGCCTCAAA
CGTTGTGGAGAAATGTGTTACCCATGCCACTCGCGGAGAACGCACTGGTC
TCATAGACGAGGTCTGCACCTTCAACGACAACGCGTTGCACGTGATGATG
AAGGATCAGTATGCCAACTATGTGGTCCAAAAAATGATCGATGTATCGGA
GCCGACGCAGCTCAAGAAGCTGATGACCAAGATCCGGCCCCACATGGCCG
CCTTGCGCAAGTACACCTACGGCAAGCACATCAATGCCAAGTTGGAGAAG
TACTACATGAAGATAACCAATCCCATTACGGTGGGCACAGGAGCTGGAGG
AGTGCCGGCAGCCTCGTCGGCGGCCGCAGTCAGCAGTGGTGCCACCTCGG
CATCGGTAACCGCCTGCACCAGTGGCAGCAGCACCACCACGACCAGCACT
ACCAACAGCCTGGCCTCACCCACCATTTGTTCGGTGCAGGAGAACGGCAG
CGCCATGGTTGTGGAGCCCTCCTCCCCGGACGCCTCCGAGTCCTCGTCCT
CGGTGGTGTCAGGCGCTGTCAACAGCAGCTTGGGTCCCATTGGACCCCCG
ACCAACGGCAACGTTGTGCTGTAAAAGCTTTCTAGACCAT

BS16462.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
pum-RE 2808 CG9755-PE 1..2808 17..2824 13995 99.9 Plus
pum-RG 4602 CG9755-PG 1977..4602 199..2824 13070 99.8 Plus
pum-RB 3558 CG9755-PB 933..3558 199..2824 13070 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
pum-RE 4685 CG9755-RE 690..3498 17..2825 14000 99.9 Plus
pum-RG 10223 CG9755-RG 2996..5622 199..2825 13075 99.8 Plus
pum-RB 7473 CG9755-RB 1481..4107 199..2825 13075 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9071752..9073031 2162..883 6385 99.9 Minus
3R 32079331 3R 9070944..9071437 2825..2332 2455 99.8 Minus
3R 32079331 3R 9080556..9081022 669..203 2335 100 Minus
3R 32079331 3R 9079744..9079964 885..665 1090 99.5 Minus
3R 32079331 3R 9071507..9071676 2331..2162 850 100 Minus
3R 32079331 3R 9157111..9157261 167..17 755 100 Minus
3R 32079331 3R 9098696..9098737 202..161 210 100 Minus
Blast to na_te.dros performed 2014-11-28 01:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10894..11127 1225..1463 191 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2324..2421 1367..1464 147 63.6 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..725 1475..1380 141 64.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6914 1223..1401 136 55.2 Plus
roo 9092 roo DM_ROO 9092bp 1050..1153 1208..1314 121 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2427 1380..1464 118 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6857 1223..1302 118 62.5 Plus

BS16462.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:45 Download gff for BS16462.complete
Subject Subject Range Query Range Percent Splice Strand
pum-RE 90..2895 17..2822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:33 Download gff for BS16462.complete
Subject Subject Range Query Range Percent Splice Strand
pum-RE 690..3495 17..2822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:24 Download gff for BS16462.complete
Subject Subject Range Query Range Percent Splice Strand
pum-RE 90..2895 17..2822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:13 Download gff for BS16462.complete
Subject Subject Range Query Range Percent Splice Strand
pum-RE 690..3495 17..2822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:13 Download gff for BS16462.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9157118..9157261 17..160 100   Minus
3R 9070947..9071437 2332..2822 99 <- Minus
3R 9071507..9071675 2163..2331 100 <- Minus
3R 9071752..9073029 885..2162 99 <- Minus
3R 9079745..9079961 668..884 99 <- Minus
3R 9080558..9081022 203..667 100 <- Minus
3R 9098696..9098737 161..202 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:33 Download gff for BS16462.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4896669..4897159 2332..2822 99 <- Minus
arm_3R 4897229..4897397 2163..2331 100 <- Minus
arm_3R 4897474..4898751 885..2162 99 <- Minus
arm_3R 4905467..4905683 668..884 99 <- Minus
arm_3R 4906280..4906744 203..667 100 <- Minus
arm_3R 4924418..4924459 161..202 100 <- Minus
arm_3R 4982840..4982983 17..160 100   Minus

BS16462.3prime Sequence

890 bp (751 high quality bases) assembled on 2007-05-15

> BS16462.3prime
ATGGTCTAGAAAGCTTTTACAGCACAACGTTGCCGTTGGTCGGGGGTCCA
ATGGGACCCAAGCTGCTGTTGACAGCGCCTGACACCACCGAGGACGAGGA
CTCGGAGGCGTCCGGGGAGGAGGGCTCCACAACCATGGCGCTGCCGTTCT
CCTGCACCGAACAAATGGTGGGTGAGGCCAGGCTGTTGGTAGTGCTGGTC
GTGGTGGTGCTGCTGCCACTGGTGCAGGCGGTTACCGATGCCGAGGTGGC
ACCACTGCTGACTGCGGCCGCCGACGAGGCTGCCGGCACTCCTCCAGCTC
CTGTGCCCACCGTAATGGGATTGGTTATCTTCATGTAGTACTTCTCCAAC
TTGGCATTGATGTGCTTGCCGTAGGTGTACTTGCGCAAGGCGGCCATGTG
GGGCCGGATCTTGGTCATCAGCTTCTTGAGCTGCGTCGGCTCCGATACAT
CGATCATTTTTTGGACCACATAGTTGGCATACTGATCCTTCATCATCACG
TGCAACGCGTTGTCGTTGAAGGTGCAGACCTCGTCTATGAGACCAGTGCG
TTCTCCGCGAGTGGCATGGGTAACACATTTCTCCACAACGTTTGAGGCGA
ACTTGTGCTGTGATAGCACCAGAACTTTGCCGCGCACGCTGTTGATAAGA
ATCGACTTATCCTCCTGCTTGCCGTGTTCAAGCACATGCTGAATAACATA
GTTGCCATATTGGTCCTGAATCAACTGTTCGGTGTGCTCATGCAGTTCGT
CCAAAATGGGCGTGGTCTGTTCGGCAGTGCAATGCTCAAGGATTCTCTGG
ATCACCCGGCATCCATACGGATGGGTGCTTAGCGAGTAAACCTGACCCTT
GAAAGCATTGATGATGAACTGCAGCGCCACGGGGTCCACG

BS16462.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9755-PA 4602 pum-RA 3729..4602 890..17 4345 99.8 Minus
CG9755-PD 4602 pum-RD 3729..4602 890..17 4345 99.8 Minus
CG9755-PC 4602 pum-RC 3729..4602 890..17 4345 99.8 Minus
CG9755-PB 3558 pum-RB 2685..3558 890..17 4345 99.8 Minus
CG9755-PE 2808 pum-RE 1935..2808 890..17 4345 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
pum-RH 8057 CG9755-RH 2582..3456 890..16 4360 99.9 Minus
pum-RG 10223 CG9755-RG 4748..5622 890..16 4360 99.9 Minus
pum-RF 4655 CG9755-RF 2594..3468 890..16 4360 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9070944..9071437 16..509 2455 99.8 Plus
3R 32079331 3R 9071752..9071963 679..890 1060 100 Plus
3R 32079331 3R 9071507..9071676 510..679 850 100 Plus
Blast to na_te.dros performed 2015-02-13 12:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 8156..8205 377..328 115 70 Minus

BS16462.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:44:27 Download gff for BS16462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9755-PE 1935..2808 17..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:55 Download gff for BS16462.3prime
Subject Subject Range Query Range Percent Splice Strand
pum-RF 2594..3468 16..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:20 Download gff for BS16462.3prime
Subject Subject Range Query Range Percent Splice Strand
pum-RF 2594..3468 16..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:20 Download gff for BS16462.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9070944..9071437 16..509 99 <- Plus
3R 9071507..9071675 510..678 100 <- Plus
3R 9071752..9071963 679..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:55 Download gff for BS16462.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4896666..4897159 16..509 99 <- Plus
arm_3R 4897229..4897397 510..678 100 <- Plus
arm_3R 4897474..4897685 679..890 100   Plus

BS16462.5prime Sequence

727 bp (638 high quality bases) assembled on 2007-05-15

> BS16462.5prime
GAAGTTATCAGTCGACATGGTGGTTTTAGAAACTGCCAGCGCCCTTTTGG
GCGGCCCGTATGCCCAGGGCGCTCCCGCCCTGAAAATGGTGCAGAAACGC
TACATTGGATTACATCACTGGCTGGGACCAATCCGCTCCAAGGAGCTAAA
GGAGCATATTGTAAGTGACGACGTGCTTTCGCTCGCTTTTAACCACAATC
AACAACTGTTTCGCTCGCAGAATCCGGGCCTAGCAGCAGTTGCCACAAAT
GCAGCGGCCGCAGCAGCAGCCGCAGCAGCTGCCACATCGGCAGCGAGTGC
TGCGGCAGCGGTGGGCGCACCACCCGTTCCCAACGGATCGCTGCAGCAGT
CGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGATG
CACATGGCGGCCGCGTCGCAACAATTTTTGGCCGCCCAGCAGCAGGCGCA
AAATGCGGCCTATGCCGCCCAACAGGCCACGTCCTACGTCATCAATCCGG
GCCAGGAGGCTGCCCCGTATATGGGCATGATTGCCGCCGCCCAGATGCCG
TACTATGGCGTAGCACCATGGGGCATGTATCCGGGCAATCTGATTCCGCA
ACAGGGAACGCAGCCGCGCCGCCCCCTCACCCCCTCGCAGCAAGGTGCCG
AAAATCAGCCGTATCAGGTCATCCCGGCATTCCTCGATCACACGGGCTCC
TTGCTGATGGGAGGACCTCGCACCAGG

BS16462.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9755-PE 2808 pum-RE 1..708 17..724 3490 99.7 Plus
CG9755-PA 4602 pum-RA 1981..2502 203..724 2560 99.6 Plus
CG9755-PD 4602 pum-RD 1981..2502 203..724 2560 99.6 Plus
CG9755-PC 4602 pum-RC 1981..2502 203..724 2560 99.6 Plus
CG9755-PB 3558 pum-RB 937..1458 203..724 2560 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
pum-RE 4685 CG9755-RE 690..1397 17..724 3510 99.7 Plus
pum-RG 10223 CG9755-RG 2996..3521 199..724 2585 99.4 Plus
pum-RB 7473 CG9755-RB 1481..2006 199..724 2585 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9080556..9081022 669..203 2305 99.6 Minus
3R 32079331 3R 9157111..9157261 167..17 755 100 Minus
3R 32079331 3R 9079905..9079964 724..665 300 100 Minus
3R 32079331 3R 9098696..9098737 202..161 210 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:02:05 has no hits.

BS16462.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:39:40 Download gff for BS16462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9755-PE 1..710 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:52:28 Download gff for BS16462.5prime
Subject Subject Range Query Range Percent Splice Strand
pum-RE 684..1399 10..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:29:33 Download gff for BS16462.5prime
Subject Subject Range Query Range Percent Splice Strand
pum-RE 684..1399 10..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:29:33 Download gff for BS16462.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9079902..9079961 668..727 98 <- Minus
3R 9080558..9081022 203..667 99 <- Minus
3R 9098696..9098737 161..202 100 <- Minus
3R 9157118..9157267 10..160 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:52:28 Download gff for BS16462.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4905624..4905683 668..727 98 <- Minus
arm_3R 4906280..4906744 203..667 99 <- Minus
arm_3R 4924418..4924459 161..202 100 <- Minus
arm_3R 4982840..4982989 10..160 98   Minus

BS16462.pep Sequence

Translation from 16 to 2823

> BS16462.pep
MVVLETASALLGGPYAQGAPALKMVQKRYIGLHHWLGPIRSKELKEHIVS
DDVLSLAFNHNQQLFRSQNPGLAAVATNAAAAAAAAAAATSAASAAAAVG
APPVPNGSLQQSQQQQQQQQQQQQQQQMHMAAASQQFLAAQQQAQNAAYA
AQQATSYVINPGQEAAPYMGMIAAAQMPYYGVAPWGMYPGNLIPQQGTQP
RRPLTPSQQGAENQPYQVIPAFLDHTGSLLMGGPRTGTPMRLVSPAPVLV
PPGATRAGPPPPQGPQLYQPQPQTAQQNLYSQQNGSSVGGLALNTSSLTG
RRDSFDRSTSAFSPSTMDYTSSGVAAAANAVNSTVAQAAAAAAAAAAARG
KWPGAMSGAASGAYGALGAGNASASPLGAPITPPPSAQSCLLGSRAPGAE
SRQRQQQQQQLAAVGLPATAAAAQAAVAAAANNMFGSNSSIFSNPLAIPG
TAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQPGRSRLLED
FRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEI
LAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGC
RVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVA
LQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQ
LIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKC
VTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLK
KLMTKIRPHMAALRKYTYGKHINAKLEKYYMKITNPITVGTGAGGVPAAS
SAAAVSSGATSASVTACTSGSSTTTTSTTNSLASPTICSVQENGSAMVVE
PSSPDASESSSSVVSGAVNSSLGPIGPPTNGNVVL*

BS16462.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
pum-PE 935 CG9755-PE 1..935 1..935 4738 100 Plus
pum-PF 925 CG9755-PF 1..925 1..935 4657 98.7 Plus
pum-PH 921 CG9755-PH 1..921 1..935 4642 98.5 Plus
pum-PG 1533 CG9755-PG 660..1533 62..935 4422 100 Plus
pum-PB 1185 CG9755-PB 312..1185 62..935 4422 100 Plus