Clone Sequence Records
BS16466.complete Sequence
2705 bp assembled on 2009-12-07
GenBank Submission: KX801772
> BS16466.complete
GAAGTTATCAGTCGACATGCCTTCTAGCGATCCCCTGCCGCCCAAGGAGG
GCGCGCTCTTCCGCAAGCTACTTAAATGCTACGAACTGAAGCAGTACAAA
AATGGCCTTAAACTGGCCAAGCAGATCCTGTCCAACCCCAAGTACATGGA
GCACGGCGAGACGCTGGCCATGAAGGGGCTTACTCTGAACGGACTGGGGC
GCCGCGAGGAGGCCTACAAGTATGTGCGTCTGGGTCTGCGAAACGACCTG
CGCTCCCACGTTTGCTGGCACGTCTACGGACTGCTCCAGCGCAGCGACAA
GAAGTACGATGAGGCCATCAAGTGCTACCGCAACGCGCTCAAGTGGGAGA
AGGATAACCTGCAGATCCTGAAGGACCTGTCGCTTCTCCAGATCCAAATG
CGCGACCTCGAGGGCTACAAGGAGACGCGCCACCACCTGTTCACGCTGCG
TCCCTCGCAGCACGCCTCCTGGATCGGTTTCGCCATGAGCTACCATCTGC
TGGGTGACTACGACATGGCCAACAGCATCCTGGAGACGTTCAGCCAGTCG
CAAACGTCGATTGAGGCGCACGATTATCGGCACTCGGAGCTGCTGCTCTA
CCAGAACCAGATACTCATCGAGTCGAATCGTCTGCAGCAGGCCGTGGACC
ACCTGACCAAATACCAGGGCCAGATCGTCGACAAGCTGGCCGTTCGCGAG
ACCATGGGTGATCTGTACATCAAGCTGCAGCAGCAGGAGAAGGCAGTGCC
CATCTTTGAGTCTCTGATCCGCCGCAATCCGGAGAATGTGCTCTACTACG
AGCAGTACATTGCCGCCCGCCAGGTGACCGACTCAAGCGCCGTGGTGTCG
ATCTATCGCGTGTTCCAGGAGCAGTATCCGCGCGCCCTGTGCCCTCGCCG
CCTGCCTTTGAACATCGCCAACGGCGACGAGTTTCGCGTCGTGACCGACG
AGTACCTGCGCCGCGGTCTGCGTAAGGGCATTCCGCCGCTATTTGTCAAC
GTGCGCACTCTGCACCAGATACCGGAGAGGGCGGCCGTTATCGAGGAGCT
GGCGCTGCAGTATTTCGAGAACCTTACCCGTTCCGGCCACTTTTCTCGCG
AAGATGCCGACGCCGGAATTCCCGTCGAGCCGGCCTCGGCGCTGGTGTGG
ACGGCACTGTTTCTGGCGCAGCACTACGACTACATGCGCGATACGGACCG
CGCTCTGGAGTACATCAATGTGGCTATCGACCATACGCCAACACTCATTG
AGCTGCTTATCACCAAGGGTCGCATCTTTAAGCATGCTGGCGATCCCGTG
GAGGCGTACGTCTGGCTGGAGGAGGCCCAAAGCATGGACACGGCAGATCG
CTACATCAATTCGAAGTGCGCGAAGTACATGCTGCGCGCCAACATGGTGC
AGGAGGCAGAGGAGATCTGCGCCAAGTTCACTCGCGAGGGTGTCTCCGCC
ATGGACAACTTGAACGAGATGCAGTGCATGTGGTTCCAGACGGAGTGTGC
CCTGGCCTATCAGCGCATGGGTCGCTGGGGCGAGTCGTTGAAGAAGTGCC
ACGAGGTGGAGCGCCACTTTGCCGAAATCGTCGAGGACCAGTTCGATTTC
CACACCTATTGCATGCGTAAAATGACGCTGCGCGCCTACGTTGGCCTGTT
GCGATTGGAGGACGTGCTACGCCAGCATCCATTCTATTTCAAGGCGGCCA
AGTGCGCCATCGAGGTGTACATTCGTCTGTACGACAAGCCGCTTAAGTCG
GAGACAACCATTGAAGAGATTGACATTGAGAACCTGCCGCCATCAGAACT
GAAGAAGCTGCGCAGCAAACAGCGCAAGGCCAAGAAGAAAGCTGAGCTGG
AGAGTGCGCAGGCCGCACAGGCGCAGGTGAAGCGCGAGCAGCACCAGAAA
TCGAAACAGCAGGCAAACCAGGAGACCGACCCCGATGCTCCGCAGTTGGA
CGAGCTGGTGGCCGAGAAGCTGGAGCGCACGGACGATCCGCTGGACAAGG
CCATTGAATTCTTGAAACCGCTGCAGCAGCTGGCTAAGGAGCGCATCGAG
ACGCATCTGCTGGCCTTCGAGTTGTACTACCGCAAGAACAAACTGCTCCT
TATGCTGCAGTGCATCCGGCGCGCTCGCGCCGTCGACGCCTCGCACCCCG
TAATCCACAGCTGCATTATTCGCTTCGTTAAATCGTTGACCAGCGCCGCC
AAGGAGCAGCCGTTCAATGAGCACGTGCAGCAGGTGCTGGAGAAGGCCAC
CAAAGAACTGATAGGCAGCAAGACGCCCCAGCAGCTCAACGATGAGTTTA
TTGCCAAACACAACGCTTCCATACTGCATTTATACGAGGGCGCCCGCAGT
CTGTACGAACTGGACAATAGTAAAAAAGCTGCCGCCATCAAGCTGGTCAC
TAGCTTCAACCTGGCCAAGCTCCGGCTGGAGGAGGCCACCAAAATCTACA
CAGCGTTGCGGGACGGCGATGTGTTTGGCGAGTGCGAGGCAGAGGCCGCT
TCCTACCAGCAGGCGTGCCACCAACGCTTCCAGTACGCCCGCATCTTTCG
CAATGTCGAGGAGCTGGAGGCTCAACTGCAGGAGAAGGAGGCCGCCAAGC
TGCGCGCCGAGGAAGAGCAGCAGCAGCTGATTCACGTTGATTCTAGTGAA
CCGGTGTCTGTTTTGGCCACGGCAGCGGCAGCGTCTTAGAAGCTTTCTAG
ACCAT
BS16466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nat1-RB | 2673 | CG12202-PB | 1..2673 | 17..2689 | 13350 | 100 | Plus |
Nat1-RA | 2673 | CG12202-PA | 1..2673 | 17..2689 | 13350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nat1-RB | 4013 | CG12202-RB | 639..3311 | 17..2689 | 13350 | 100 | Plus |
Nat1-RA | 3738 | CG12202-RA | 364..3036 | 17..2689 | 13350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19481598..19482385 | 563..1350 | 3940 | 100 | Plus |
X | 23542271 | X | 19482951..19483605 | 1778..2432 | 3260 | 99.8 | Plus |
X | 23542271 | X | 19481018..19481507 | 74..563 | 2450 | 100 | Plus |
X | 23542271 | X | 19482451..19482879 | 1350..1778 | 2145 | 100 | Plus |
X | 23542271 | X | 19483682..19483941 | 2430..2689 | 1300 | 100 | Plus |
X | 23542271 | X | 19480622..19480678 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:01:43 has no hits.
BS16466.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:39 Download gff for
BS16466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nat1-RA | 470..3142 | 17..2689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:59 Download gff for
BS16466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nat1-RA | 364..3036 | 17..2689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:49 Download gff for
BS16466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nat1-RA | 470..3142 | 17..2689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:17 Download gff for
BS16466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nat1-RA | 364..3036 | 17..2689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:17 Download gff for
BS16466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19480622..19480678 | 17..73 | 100 | -> | Plus |
X | 19481018..19481506 | 74..562 | 100 | -> | Plus |
X | 19481598..19482385 | 563..1350 | 100 | -> | Plus |
X | 19482452..19482879 | 1351..1778 | 100 | -> | Plus |
X | 19482952..19483604 | 1779..2431 | 99 | -> | Plus |
X | 19483684..19483941 | 2432..2689 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:59 Download gff for
BS16466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19374655..19374711 | 17..73 | 100 | -> | Plus |
arm_X | 19375051..19375539 | 74..562 | 100 | -> | Plus |
arm_X | 19375631..19376418 | 563..1350 | 100 | -> | Plus |
arm_X | 19376485..19376912 | 1351..1778 | 100 | -> | Plus |
arm_X | 19376985..19377637 | 1779..2431 | 99 | -> | Plus |
arm_X | 19377717..19377974 | 2432..2689 | 100 | | Plus |
BS16466.3prime Sequence
883 bp (788 high quality bases) assembled on 2007-05-15
> BS16466.3prime
ATGGTCTAGAAAGCTTCTAAGACGCTGCCGCTGCCGTGGCCAAAACAGAC
ACCGGTTCACTAGAATCAACGTGAATCAGCTGCTGCTGCTCTTCCTCGGC
GCGCAGCTTGGCGGCCTCCTTCTCCTGCAGTTGAGCCTCCAGCTCCTCGA
CATTGCGAAAGATGCGGGCGTACTGGAAGCGTTGGTGGCACGCCTGCTGG
TAGGAAGCGGCCTCTGCCTCGCACTCGCCAAACACATCGCCGTCCCGCAA
CGCTGTGTAGATTTTGGTGGCCTCCTCCAGCCGGAGCTTGGCCAGGTTGA
AGCTAGTGACCAGCTTGATGGCGGCAGCTTTTTTACTATTGTCCAGTTCG
TACAGACTGCGGGCGCCCTCGTATAAATGCAGTATGGAAGCGTTGTGTTT
GGCAATAAACTCATCGTTGAGCTGCTGGGGCGTCTTGCTGCCTATCAGTT
CTTTGGTGGCCTTCTCCAGCACCTGCTGCACGTGCTCATTGAACGGCTGC
TCCTTGGCGGCGCTGGTCAACGATTTAACGAAGCGAATAATGCAGCTGTG
GATTACGGGGTGCGAGGCGTCGACGGCGCGAGCGCGCCGGATGCACTGCA
GCATAAGGAGCAGTTTGTTCTTGCGGTAGTACAACTCGAAGGCCAGCAGA
TGCGTCTCGATGCGCTCCTTAGCCAGCTGCTGCAGCGGTTTCAAGAATTC
AATGGCCTTGTCCAGCGGATCGTCCGTGCGCTCCAGCTTCTCGGCCACCA
GCTCGTCCAACTGCGGAGCATCGGGGTCGGTCTCCTGGTTTGCCTGCTGT
TTCGATTTCTGGTGCTGCTCGCGCTTCACCTGCGCCTGTGCGGCCTGCGC
ACTCTCCAGCTCAGCTTTCTTTCTGGNCTTGCG
BS16466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12202-PA | 2673 | Nat1-RA | 1819..2673 | 871..17 | 4250 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nat1-RB | 4013 | CG12202-RB | 2445..3311 | 883..17 | 4279 | 99.5 | Minus |
Nat1-RA | 3738 | CG12202-RA | 2170..3036 | 883..17 | 4279 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19482996..19483605 | 883..274 | 2994 | 99.3 | Minus |
X | 23542271 | X | 19483682..19483941 | 276..17 | 1300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:34:51 has no hits.
BS16466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:42 Download gff for
BS16466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12202-PA | 1807..2673 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:12 Download gff for
BS16466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nat1-RA | 2170..3036 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:05 Download gff for
BS16466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nat1-RA | 2170..3036 | 17..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:05 Download gff for
BS16466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19482996..19483604 | 275..883 | 99 | -> | Minus |
X | 19483684..19483941 | 17..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:12 Download gff for
BS16466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19377029..19377637 | 275..883 | 99 | -> | Minus |
arm_X | 19377717..19377974 | 17..274 | 100 | | Minus |
BS16466.5prime Sequence
907 bp (781 high quality bases) assembled on 2007-05-15
> BS16466.5prime
GAAGTTATCAGTCGACATGCCTTCTAGCGATCCCCTGCCGCCCAAGGAGG
GCGCGCTCTTCCGCAAGCTACTTAAATGCTACGAACTGAAGCAGTACAAA
AATGGCCTTAAACTGGCCAAGCAGATCCTGTCCAACCCCAAGTACATGGA
GCACGGCGAGACGCTGGCCATGAAGGGGCTTACTCTGAACGGACTGGGGC
GCCGCGAGGAGGCCTACAAGTATGTGCGTCTGGGTCTGCGAAACGACCTG
CGCTCCCACGTTTGCTGGCACGTCTACGGACTGCTCCAGCGCAGCGACAA
GAAGTACGATGAGGCCATCAAGTGCTACCGCAACGCGCTCAAGTGGGAGA
AGGATAACCTGCAGATCCTGAAGGACCTGTCGCTTCTCCAGATCCAAATG
CGCGACCTCGAGGGCTACAAGGAGACGCGCCACCACCTGTTCACGCTGCG
TCCCTCGCAGCACGCCTCCTGGATCGGTTTCGCCATGAGCTACCATCTGC
TGGGTGACTACGACATGGCCAACAGCATCCTGGAGACGTTCAGCCAGTCG
CAAACGTCGATTGAGGCGCACGATTATCGGCACTCGGAGCTGCTGCTCTA
CCAGAACCAGATACTCATCGAGTCGAATCGTCTGCAGCAGGCCGTGGACC
ACCTGACCAAATACCAGGGCCAGATCGTCGACAAGCTGGCCGTTCGCGAG
ACCATGGGTGATCTGTACATCAAGCTGCAGCAGCAGGAGAAGGCAGTGCC
CATCTTTGAGTCTCTGATCCGCCGCAATCCGGAGAATGTGCTCTACTACG
AGCAGTACATTGCCGCCCGCCAGGTGACCGACTCAAGCGCCGTGGTGTCG
ATCTATCGCGTGTTCCAGGAGCAGTATCGGCGCGCCCTGTGCCCTCGCCG
CCTGCCC
BS16466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12202-PA | 2673 | Nat1-RA | 1..890 | 17..906 | 4425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nat1-RB | 4013 | CG12202-RB | 639..1528 | 17..906 | 4435 | 99.9 | Plus |
Nat1-RA | 3738 | CG12202-RA | 364..1253 | 17..906 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19481018..19481507 | 74..563 | 2450 | 100 | Plus |
X | 23542271 | X | 19481598..19481941 | 563..906 | 1705 | 99.7 | Plus |
X | 23542271 | X | 19480622..19480678 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:06:18 has no hits.
BS16466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:11 Download gff for
BS16466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12202-PA | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:03 Download gff for
BS16466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nat1-RA | 361..1253 | 14..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:43 Download gff for
BS16466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nat1-RA | 361..1253 | 14..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:43 Download gff for
BS16466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19481598..19481941 | 563..907 | 99 | | Plus |
X | 19480619..19480678 | 14..73 | 98 | -> | Plus |
X | 19481018..19481506 | 74..562 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:03 Download gff for
BS16466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19374652..19374711 | 14..73 | 98 | -> | Plus |
arm_X | 19375051..19375539 | 74..562 | 100 | -> | Plus |
arm_X | 19375631..19375974 | 563..907 | 99 | | Plus |
BS16466.pep Sequence
Translation from 16 to 2688
> BS16466.pep
MPSSDPLPPKEGALFRKLLKCYELKQYKNGLKLAKQILSNPKYMEHGETL
AMKGLTLNGLGRREEAYKYVRLGLRNDLRSHVCWHVYGLLQRSDKKYDEA
IKCYRNALKWEKDNLQILKDLSLLQIQMRDLEGYKETRHHLFTLRPSQHA
SWIGFAMSYHLLGDYDMANSILETFSQSQTSIEAHDYRHSELLLYQNQIL
IESNRLQQAVDHLTKYQGQIVDKLAVRETMGDLYIKLQQQEKAVPIFESL
IRRNPENVLYYEQYIAARQVTDSSAVVSIYRVFQEQYPRALCPRRLPLNI
ANGDEFRVVTDEYLRRGLRKGIPPLFVNVRTLHQIPERAAVIEELALQYF
ENLTRSGHFSREDADAGIPVEPASALVWTALFLAQHYDYMRDTDRALEYI
NVAIDHTPTLIELLITKGRIFKHAGDPVEAYVWLEEAQSMDTADRYINSK
CAKYMLRANMVQEAEEICAKFTREGVSAMDNLNEMQCMWFQTECALAYQR
MGRWGESLKKCHEVERHFAEIVEDQFDFHTYCMRKMTLRAYVGLLRLEDV
LRQHPFYFKAAKCAIEVYIRLYDKPLKSETTIEEIDIENLPPSELKKLRS
KQRKAKKKAELESAQAAQAQVKREQHQKSKQQANQETDPDAPQLDELVAE
KLERTDDPLDKAIEFLKPLQQLAKERIETHLLAFELYYRKNKLLLMLQCI
RRARAVDASHPVIHSCIIRFVKSLTSAAKEQPFNEHVQQVLEKATKELIG
SKTPQQLNDEFIAKHNASILHLYEGARSLYELDNSKKAAAIKLVTSFNLA
KLRLEEATKIYTALRDGDVFGECEAEAASYQQACHQRFQYARIFRNVEEL
EAQLQEKEAAKLRAEEEQQQLIHVDSSEPVSVLATAAAAS*
BS16466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nat1-PB | 890 | CG12202-PB | 1..890 | 1..890 | 4582 | 100 | Plus |
Nat1-PA | 890 | CG12202-PA | 1..890 | 1..890 | 4582 | 100 | Plus |