Clone BS16466 Report

Search the DGRC for BS16466

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptNat1-RA
Protein status:BS16466.pep: full length peptide match
Sequenced Size:2705

Clone Sequence Records

BS16466.complete Sequence

2705 bp assembled on 2009-12-07

GenBank Submission: KX801772

> BS16466.complete
GAAGTTATCAGTCGACATGCCTTCTAGCGATCCCCTGCCGCCCAAGGAGG
GCGCGCTCTTCCGCAAGCTACTTAAATGCTACGAACTGAAGCAGTACAAA
AATGGCCTTAAACTGGCCAAGCAGATCCTGTCCAACCCCAAGTACATGGA
GCACGGCGAGACGCTGGCCATGAAGGGGCTTACTCTGAACGGACTGGGGC
GCCGCGAGGAGGCCTACAAGTATGTGCGTCTGGGTCTGCGAAACGACCTG
CGCTCCCACGTTTGCTGGCACGTCTACGGACTGCTCCAGCGCAGCGACAA
GAAGTACGATGAGGCCATCAAGTGCTACCGCAACGCGCTCAAGTGGGAGA
AGGATAACCTGCAGATCCTGAAGGACCTGTCGCTTCTCCAGATCCAAATG
CGCGACCTCGAGGGCTACAAGGAGACGCGCCACCACCTGTTCACGCTGCG
TCCCTCGCAGCACGCCTCCTGGATCGGTTTCGCCATGAGCTACCATCTGC
TGGGTGACTACGACATGGCCAACAGCATCCTGGAGACGTTCAGCCAGTCG
CAAACGTCGATTGAGGCGCACGATTATCGGCACTCGGAGCTGCTGCTCTA
CCAGAACCAGATACTCATCGAGTCGAATCGTCTGCAGCAGGCCGTGGACC
ACCTGACCAAATACCAGGGCCAGATCGTCGACAAGCTGGCCGTTCGCGAG
ACCATGGGTGATCTGTACATCAAGCTGCAGCAGCAGGAGAAGGCAGTGCC
CATCTTTGAGTCTCTGATCCGCCGCAATCCGGAGAATGTGCTCTACTACG
AGCAGTACATTGCCGCCCGCCAGGTGACCGACTCAAGCGCCGTGGTGTCG
ATCTATCGCGTGTTCCAGGAGCAGTATCCGCGCGCCCTGTGCCCTCGCCG
CCTGCCTTTGAACATCGCCAACGGCGACGAGTTTCGCGTCGTGACCGACG
AGTACCTGCGCCGCGGTCTGCGTAAGGGCATTCCGCCGCTATTTGTCAAC
GTGCGCACTCTGCACCAGATACCGGAGAGGGCGGCCGTTATCGAGGAGCT
GGCGCTGCAGTATTTCGAGAACCTTACCCGTTCCGGCCACTTTTCTCGCG
AAGATGCCGACGCCGGAATTCCCGTCGAGCCGGCCTCGGCGCTGGTGTGG
ACGGCACTGTTTCTGGCGCAGCACTACGACTACATGCGCGATACGGACCG
CGCTCTGGAGTACATCAATGTGGCTATCGACCATACGCCAACACTCATTG
AGCTGCTTATCACCAAGGGTCGCATCTTTAAGCATGCTGGCGATCCCGTG
GAGGCGTACGTCTGGCTGGAGGAGGCCCAAAGCATGGACACGGCAGATCG
CTACATCAATTCGAAGTGCGCGAAGTACATGCTGCGCGCCAACATGGTGC
AGGAGGCAGAGGAGATCTGCGCCAAGTTCACTCGCGAGGGTGTCTCCGCC
ATGGACAACTTGAACGAGATGCAGTGCATGTGGTTCCAGACGGAGTGTGC
CCTGGCCTATCAGCGCATGGGTCGCTGGGGCGAGTCGTTGAAGAAGTGCC
ACGAGGTGGAGCGCCACTTTGCCGAAATCGTCGAGGACCAGTTCGATTTC
CACACCTATTGCATGCGTAAAATGACGCTGCGCGCCTACGTTGGCCTGTT
GCGATTGGAGGACGTGCTACGCCAGCATCCATTCTATTTCAAGGCGGCCA
AGTGCGCCATCGAGGTGTACATTCGTCTGTACGACAAGCCGCTTAAGTCG
GAGACAACCATTGAAGAGATTGACATTGAGAACCTGCCGCCATCAGAACT
GAAGAAGCTGCGCAGCAAACAGCGCAAGGCCAAGAAGAAAGCTGAGCTGG
AGAGTGCGCAGGCCGCACAGGCGCAGGTGAAGCGCGAGCAGCACCAGAAA
TCGAAACAGCAGGCAAACCAGGAGACCGACCCCGATGCTCCGCAGTTGGA
CGAGCTGGTGGCCGAGAAGCTGGAGCGCACGGACGATCCGCTGGACAAGG
CCATTGAATTCTTGAAACCGCTGCAGCAGCTGGCTAAGGAGCGCATCGAG
ACGCATCTGCTGGCCTTCGAGTTGTACTACCGCAAGAACAAACTGCTCCT
TATGCTGCAGTGCATCCGGCGCGCTCGCGCCGTCGACGCCTCGCACCCCG
TAATCCACAGCTGCATTATTCGCTTCGTTAAATCGTTGACCAGCGCCGCC
AAGGAGCAGCCGTTCAATGAGCACGTGCAGCAGGTGCTGGAGAAGGCCAC
CAAAGAACTGATAGGCAGCAAGACGCCCCAGCAGCTCAACGATGAGTTTA
TTGCCAAACACAACGCTTCCATACTGCATTTATACGAGGGCGCCCGCAGT
CTGTACGAACTGGACAATAGTAAAAAAGCTGCCGCCATCAAGCTGGTCAC
TAGCTTCAACCTGGCCAAGCTCCGGCTGGAGGAGGCCACCAAAATCTACA
CAGCGTTGCGGGACGGCGATGTGTTTGGCGAGTGCGAGGCAGAGGCCGCT
TCCTACCAGCAGGCGTGCCACCAACGCTTCCAGTACGCCCGCATCTTTCG
CAATGTCGAGGAGCTGGAGGCTCAACTGCAGGAGAAGGAGGCCGCCAAGC
TGCGCGCCGAGGAAGAGCAGCAGCAGCTGATTCACGTTGATTCTAGTGAA
CCGGTGTCTGTTTTGGCCACGGCAGCGGCAGCGTCTTAGAAGCTTTCTAG
ACCAT

BS16466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Nat1-RB 2673 CG12202-PB 1..2673 17..2689 13350 100 Plus
Nat1-RA 2673 CG12202-PA 1..2673 17..2689 13350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Nat1-RB 4013 CG12202-RB 639..3311 17..2689 13350 100 Plus
Nat1-RA 3738 CG12202-RA 364..3036 17..2689 13350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19481598..19482385 563..1350 3940 100 Plus
X 23542271 X 19482951..19483605 1778..2432 3260 99.8 Plus
X 23542271 X 19481018..19481507 74..563 2450 100 Plus
X 23542271 X 19482451..19482879 1350..1778 2145 100 Plus
X 23542271 X 19483682..19483941 2430..2689 1300 100 Plus
X 23542271 X 19480622..19480678 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:01:43 has no hits.

BS16466.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:39 Download gff for BS16466.complete
Subject Subject Range Query Range Percent Splice Strand
Nat1-RA 470..3142 17..2689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:59 Download gff for BS16466.complete
Subject Subject Range Query Range Percent Splice Strand
Nat1-RA 364..3036 17..2689 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:49 Download gff for BS16466.complete
Subject Subject Range Query Range Percent Splice Strand
Nat1-RA 470..3142 17..2689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:17 Download gff for BS16466.complete
Subject Subject Range Query Range Percent Splice Strand
Nat1-RA 364..3036 17..2689 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:17 Download gff for BS16466.complete
Subject Subject Range Query Range Percent Splice Strand
X 19480622..19480678 17..73 100 -> Plus
X 19481018..19481506 74..562 100 -> Plus
X 19481598..19482385 563..1350 100 -> Plus
X 19482452..19482879 1351..1778 100 -> Plus
X 19482952..19483604 1779..2431 99 -> Plus
X 19483684..19483941 2432..2689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:59 Download gff for BS16466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19374655..19374711 17..73 100 -> Plus
arm_X 19375051..19375539 74..562 100 -> Plus
arm_X 19375631..19376418 563..1350 100 -> Plus
arm_X 19376485..19376912 1351..1778 100 -> Plus
arm_X 19376985..19377637 1779..2431 99 -> Plus
arm_X 19377717..19377974 2432..2689 100   Plus

BS16466.3prime Sequence

883 bp (788 high quality bases) assembled on 2007-05-15

> BS16466.3prime
ATGGTCTAGAAAGCTTCTAAGACGCTGCCGCTGCCGTGGCCAAAACAGAC
ACCGGTTCACTAGAATCAACGTGAATCAGCTGCTGCTGCTCTTCCTCGGC
GCGCAGCTTGGCGGCCTCCTTCTCCTGCAGTTGAGCCTCCAGCTCCTCGA
CATTGCGAAAGATGCGGGCGTACTGGAAGCGTTGGTGGCACGCCTGCTGG
TAGGAAGCGGCCTCTGCCTCGCACTCGCCAAACACATCGCCGTCCCGCAA
CGCTGTGTAGATTTTGGTGGCCTCCTCCAGCCGGAGCTTGGCCAGGTTGA
AGCTAGTGACCAGCTTGATGGCGGCAGCTTTTTTACTATTGTCCAGTTCG
TACAGACTGCGGGCGCCCTCGTATAAATGCAGTATGGAAGCGTTGTGTTT
GGCAATAAACTCATCGTTGAGCTGCTGGGGCGTCTTGCTGCCTATCAGTT
CTTTGGTGGCCTTCTCCAGCACCTGCTGCACGTGCTCATTGAACGGCTGC
TCCTTGGCGGCGCTGGTCAACGATTTAACGAAGCGAATAATGCAGCTGTG
GATTACGGGGTGCGAGGCGTCGACGGCGCGAGCGCGCCGGATGCACTGCA
GCATAAGGAGCAGTTTGTTCTTGCGGTAGTACAACTCGAAGGCCAGCAGA
TGCGTCTCGATGCGCTCCTTAGCCAGCTGCTGCAGCGGTTTCAAGAATTC
AATGGCCTTGTCCAGCGGATCGTCCGTGCGCTCCAGCTTCTCGGCCACCA
GCTCGTCCAACTGCGGAGCATCGGGGTCGGTCTCCTGGTTTGCCTGCTGT
TTCGATTTCTGGTGCTGCTCGCGCTTCACCTGCGCCTGTGCGGCCTGCGC
ACTCTCCAGCTCAGCTTTCTTTCTGGNCTTGCG

BS16466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12202-PA 2673 Nat1-RA 1819..2673 871..17 4250 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Nat1-RB 4013 CG12202-RB 2445..3311 883..17 4279 99.5 Minus
Nat1-RA 3738 CG12202-RA 2170..3036 883..17 4279 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19482996..19483605 883..274 2994 99.3 Minus
X 23542271 X 19483682..19483941 276..17 1300 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:34:51 has no hits.

BS16466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:42 Download gff for BS16466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12202-PA 1807..2673 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:12 Download gff for BS16466.3prime
Subject Subject Range Query Range Percent Splice Strand
Nat1-RA 2170..3036 17..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:05 Download gff for BS16466.3prime
Subject Subject Range Query Range Percent Splice Strand
Nat1-RA 2170..3036 17..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:05 Download gff for BS16466.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19482996..19483604 275..883 99 -> Minus
X 19483684..19483941 17..274 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:12 Download gff for BS16466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19377029..19377637 275..883 99 -> Minus
arm_X 19377717..19377974 17..274 100   Minus

BS16466.5prime Sequence

907 bp (781 high quality bases) assembled on 2007-05-15

> BS16466.5prime
GAAGTTATCAGTCGACATGCCTTCTAGCGATCCCCTGCCGCCCAAGGAGG
GCGCGCTCTTCCGCAAGCTACTTAAATGCTACGAACTGAAGCAGTACAAA
AATGGCCTTAAACTGGCCAAGCAGATCCTGTCCAACCCCAAGTACATGGA
GCACGGCGAGACGCTGGCCATGAAGGGGCTTACTCTGAACGGACTGGGGC
GCCGCGAGGAGGCCTACAAGTATGTGCGTCTGGGTCTGCGAAACGACCTG
CGCTCCCACGTTTGCTGGCACGTCTACGGACTGCTCCAGCGCAGCGACAA
GAAGTACGATGAGGCCATCAAGTGCTACCGCAACGCGCTCAAGTGGGAGA
AGGATAACCTGCAGATCCTGAAGGACCTGTCGCTTCTCCAGATCCAAATG
CGCGACCTCGAGGGCTACAAGGAGACGCGCCACCACCTGTTCACGCTGCG
TCCCTCGCAGCACGCCTCCTGGATCGGTTTCGCCATGAGCTACCATCTGC
TGGGTGACTACGACATGGCCAACAGCATCCTGGAGACGTTCAGCCAGTCG
CAAACGTCGATTGAGGCGCACGATTATCGGCACTCGGAGCTGCTGCTCTA
CCAGAACCAGATACTCATCGAGTCGAATCGTCTGCAGCAGGCCGTGGACC
ACCTGACCAAATACCAGGGCCAGATCGTCGACAAGCTGGCCGTTCGCGAG
ACCATGGGTGATCTGTACATCAAGCTGCAGCAGCAGGAGAAGGCAGTGCC
CATCTTTGAGTCTCTGATCCGCCGCAATCCGGAGAATGTGCTCTACTACG
AGCAGTACATTGCCGCCCGCCAGGTGACCGACTCAAGCGCCGTGGTGTCG
ATCTATCGCGTGTTCCAGGAGCAGTATCGGCGCGCCCTGTGCCCTCGCCG
CCTGCCC

BS16466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12202-PA 2673 Nat1-RA 1..890 17..906 4425 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Nat1-RB 4013 CG12202-RB 639..1528 17..906 4435 99.9 Plus
Nat1-RA 3738 CG12202-RA 364..1253 17..906 4435 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19481018..19481507 74..563 2450 100 Plus
X 23542271 X 19481598..19481941 563..906 1705 99.7 Plus
X 23542271 X 19480622..19480678 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:06:18 has no hits.

BS16466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:11 Download gff for BS16466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12202-PA 1..890 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:03 Download gff for BS16466.5prime
Subject Subject Range Query Range Percent Splice Strand
Nat1-RA 361..1253 14..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:43 Download gff for BS16466.5prime
Subject Subject Range Query Range Percent Splice Strand
Nat1-RA 361..1253 14..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:43 Download gff for BS16466.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19481598..19481941 563..907 99   Plus
X 19480619..19480678 14..73 98 -> Plus
X 19481018..19481506 74..562 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:03 Download gff for BS16466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19374652..19374711 14..73 98 -> Plus
arm_X 19375051..19375539 74..562 100 -> Plus
arm_X 19375631..19375974 563..907 99   Plus

BS16466.pep Sequence

Translation from 16 to 2688

> BS16466.pep
MPSSDPLPPKEGALFRKLLKCYELKQYKNGLKLAKQILSNPKYMEHGETL
AMKGLTLNGLGRREEAYKYVRLGLRNDLRSHVCWHVYGLLQRSDKKYDEA
IKCYRNALKWEKDNLQILKDLSLLQIQMRDLEGYKETRHHLFTLRPSQHA
SWIGFAMSYHLLGDYDMANSILETFSQSQTSIEAHDYRHSELLLYQNQIL
IESNRLQQAVDHLTKYQGQIVDKLAVRETMGDLYIKLQQQEKAVPIFESL
IRRNPENVLYYEQYIAARQVTDSSAVVSIYRVFQEQYPRALCPRRLPLNI
ANGDEFRVVTDEYLRRGLRKGIPPLFVNVRTLHQIPERAAVIEELALQYF
ENLTRSGHFSREDADAGIPVEPASALVWTALFLAQHYDYMRDTDRALEYI
NVAIDHTPTLIELLITKGRIFKHAGDPVEAYVWLEEAQSMDTADRYINSK
CAKYMLRANMVQEAEEICAKFTREGVSAMDNLNEMQCMWFQTECALAYQR
MGRWGESLKKCHEVERHFAEIVEDQFDFHTYCMRKMTLRAYVGLLRLEDV
LRQHPFYFKAAKCAIEVYIRLYDKPLKSETTIEEIDIENLPPSELKKLRS
KQRKAKKKAELESAQAAQAQVKREQHQKSKQQANQETDPDAPQLDELVAE
KLERTDDPLDKAIEFLKPLQQLAKERIETHLLAFELYYRKNKLLLMLQCI
RRARAVDASHPVIHSCIIRFVKSLTSAAKEQPFNEHVQQVLEKATKELIG
SKTPQQLNDEFIAKHNASILHLYEGARSLYELDNSKKAAAIKLVTSFNLA
KLRLEEATKIYTALRDGDVFGECEAEAASYQQACHQRFQYARIFRNVEEL
EAQLQEKEAAKLRAEEEQQQLIHVDSSEPVSVLATAAAAS*

BS16466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Nat1-PB 890 CG12202-PB 1..890 1..890 4582 100 Plus
Nat1-PA 890 CG12202-PA 1..890 1..890 4582 100 Plus