Clone Sequence Records
BS16478.3prime Sequence
855 bp (841 high quality bases) assembled on 2007-05-15
> BS16478.3prime
ATGGTCTAGAAAGCTTTTAGTTAACGCTAGCAAAACGCGGATACGCAATT
ACGGAACACTGAAAGTGGGACTTGTGGGTGGCAACGTTCCTCTTGATGCG
CCGCAGGGAGCAGTAGTAGGCCATCACGGCTCGCAGGCTCTTCCACTTCG
TTGTCTGCTGCTGGCCATTGGAGGCATTGGCAGTGGCGGCTGCGGATGCG
GATGCCGAGGAGGTGGCGAAGGCGCCACTCCGGGACTGATCCTCCGCTGC
CACAAGCTCCTCGGGATGCTCGCTGATGAACGACGAGAGGGTCTTCATCG
CTGGCAATGGCCTGGGACCCACCGGCGTGCTGGCGCTCTGGTCGGAGGAC
GGACTGTTCACATGGAGGCGCACCTGGCGCCGCTGACGGGCCTGGTGCGG
ATGCGGATACGGATGCGGATGCGTATGCGGATGTTGATGCGGTTGTGCCG
GCGTCAGTATAAGTCTATCCCTCTCAGTATACCTTAAACTAGTGGTGGTG
GGGCAGCCGCAGTGGTGCAGTTGCCCACTGGTTAGCGACGAGCTGCCGGA
TCGCTGGCTGGGACTCTTGCTGTCCGATGAGTGCGCCGCACTGTTGTTGT
CGTCATCGCGGACCATCTTGTGGTGGTGCCGCTTGTGATAGCCACCGTCG
CTGTGTCCGCCAGCACCACCGGATCCGCCGGCACCGCCTGCTCCGCCGCC
TCCTCCGCCACCGGAGATACTGGTGCCCGTGGGACTGATGACATCCGTGT
CGCTGTTGCAGTCGTGCACCTGACGGGCCACATCCTTGACAAACTTGCCC
GCTTCGTGCTCGTGCGCTTCCATCGTATATAGGCCCGTTGCAGTGGCCCC
CGACG
BS16478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18210-PA | 960 | CG18210-RA | 122..960 | 855..17 | 4195 | 100 | Minus |
CG17762-PD | 4413 | tomosyn-RD | 2571..2597 | 422..396 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-RF | 5515 | CG43395-RF | 2371..3209 | 855..17 | 4195 | 100 | Minus |
Cngl-RE | 11745 | CG43395-RE | 2371..2674 | 855..552 | 1520 | 100 | Minus |
Cngl-RD | 11700 | CG43395-RD | 2371..2674 | 855..552 | 1520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15408039..15408574 | 17..552 | 2680 | 100 | Plus |
X | 23542271 | X | 15410832..15411104 | 552..824 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:59:54 has no hits.
BS16478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:59 Download gff for
BS16478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-PA | 122..960 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:50 Download gff for
BS16478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cngl-RF | 2337..3177 | 12..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:59 Download gff for
BS16478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cngl-RF | 2371..3211 | 12..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:59 Download gff for
BS16478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15408039..15408573 | 17..551 | 100 | <- | Plus |
X | 15410832..15411103 | 552..823 | 100 | <- | Plus |
X | 15419963..15419994 | 824..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:50 Download gff for
BS16478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15302072..15302606 | 17..551 | 100 | <- | Plus |
arm_X | 15304865..15305136 | 552..823 | 100 | <- | Plus |
arm_X | 15313996..15314027 | 824..855 | 100 | | Plus |
BS16478.5prime Sequence
834 bp (756 high quality bases) assembled on 2007-05-15
> BS16478.5prime
GAAGTTATCAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATG
CATCCGCACACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAAC
TACGGCAGCACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCAC
TGCAACGGGCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGT
TTGTCAAGGATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGAT
GTCATCAGTCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGG
AGCAGGCGGTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTG
GCTATCACAAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAAC
AGTGCGGCGCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAG
CTCGTCGCTAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCA
CTAGTTTAAGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAA
CCGCATCAACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCA
GGCCCGTCAGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCG
ACCAGAGCGCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAG
ACCCTCTCGTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGA
GGATCAGTCCCGGAGTGGCGCCTTCGCCACCTCCTCGGCATCCGCATCCG
CAGCCGCCACTGCCAATGCCTCCAATGGCCAGCA
BS16478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18210-PA | 960 | CG18210-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG17762-PD | 4413 | tomosyn-RD | 2571..2597 | 571..597 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-RF | 5515 | CG43395-RF | 2250..3067 | 17..834 | 4090 | 100 | Plus |
Cngl-RE | 11745 | CG43395-RE | 2250..2674 | 17..441 | 2125 | 100 | Plus |
Cngl-RD | 11700 | CG43395-RD | 2250..2674 | 17..441 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15408181..15408574 | 834..441 | 1970 | 100 | Minus |
X | 23542271 | X | 15410832..15411104 | 441..169 | 1365 | 100 | Minus |
X | 23542271 | X | 15419963..15420115 | 169..17 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:55:25 has no hits.
BS16478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:29 Download gff for
BS16478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:44 Download gff for
BS16478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cngl-RF | 2211..3032 | 8..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:55 Download gff for
BS16478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cngl-RF | 2245..3066 | 8..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:55 Download gff for
BS16478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15408182..15408573 | 442..833 | 100 | <- | Minus |
X | 15410832..15411103 | 170..441 | 100 | <- | Minus |
X | 15419963..15420120 | 8..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:44 Download gff for
BS16478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15302215..15302606 | 442..833 | 100 | <- | Minus |
arm_X | 15304865..15305136 | 170..441 | 100 | <- | Minus |
arm_X | 15313996..15314153 | 8..169 | 97 | | Minus |
BS16478.complete Sequence
992 bp assembled on 2007-05-07
GenBank Submission: FJ638149
> BS16478.complete
GAAGTTATCAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATG
CATCCGCACACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAAC
TACGGCAGCACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCAC
TGCAACGGGCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGT
TTGTCAAGGATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGAT
GTCATCAGTCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGG
AGCAGGCGGTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTG
GCTATCACAAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAAC
AGTGCGGCGCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAG
CTCGTCGCTAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCA
CTAGTTTAAGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAA
CCGCATCAACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCA
GGCCCGTCAGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCG
ACCAGAGCGCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAG
ACCCTCTCGTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGA
GGATCAGTCCCGGAGTGGCGCCTTCGCCACCTCCTCGGCATCCGCATCCG
CAGCCGCCACTGCCAATGCCTCCAATGGCCAGCAGCAGACAACGAAGTGG
AAGAGCCTGCGAGCCGTGATGGCCTACTACTGCTCCCTGCGGCGCATCAA
GAGGAACGTTGCCACCCACAAGTCCCACTTTCAGTGTTCCGTAATTGCGT
ATCCGCGTTTTGCTAGCGTTAACTAAAAGCTTTCTAGACCAT
BS16478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-RF | 960 | CG43395-PF | 1..960 | 17..976 | 4800 | 100 | Plus |
Cngl-RE | 5913 | CG43395-PE | 1..425 | 17..441 | 2125 | 100 | Plus |
Cngl-RD | 5868 | CG43395-PD | 1..425 | 17..441 | 2125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-RF | 5515 | CG43395-RF | 2250..3209 | 17..976 | 4800 | 100 | Plus |
Cngl-RE | 11745 | CG43395-RE | 2250..2674 | 17..441 | 2125 | 100 | Plus |
Cngl-RD | 11700 | CG43395-RD | 2250..2674 | 17..441 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15408039..15408574 | 976..441 | 2680 | 100 | Minus |
X | 23542271 | X | 15410832..15411104 | 441..169 | 1365 | 100 | Minus |
X | 23542271 | X | 15419963..15420115 | 169..17 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:11:19 has no hits.
BS16478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:10 Download gff for
BS16478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:08 Download gff for
BS16478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-RA | 1347..2304 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:07 Download gff for
BS16478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cngl-RF | 2216..3173 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:10 Download gff for
BS16478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-RA | 1342..2308 | 8..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:51 Download gff for
BS16478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cngl-RF | 2250..3207 | 17..974 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:51 Download gff for
BS16478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15408041..15408573 | 442..974 | 100 | <- | Minus |
X | 15410832..15411103 | 170..441 | 100 | <- | Minus |
X | 15419963..15420115 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:07 Download gff for
BS16478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15304865..15305136 | 170..441 | 100 | <- | Minus |
arm_X | 15313996..15314148 | 17..169 | 100 | | Minus |
arm_X | 15302074..15302606 | 442..974 | 100 | <- | Minus |
BS16478.pep Sequence
Translation from 16 to 975
> BS16478.pep
MKLSVSAYRAHASAHKKILSSGYHSQLNYGSTGAAAASSSSSGATATGLY
TMEAHEHEAGKFVKDVARQVHDCNSDTDVISPTGTSISGGGGGGGAGGAG
GSGGAGGHSDGGYHKRHHHKMVRDDDNNSAAHSSDSKSPSQRSGSSSLTS
GQLHHCGCPTTTSLRYTERDRLILTPAQPHQHPHTHPHPYPHPHQARQRR
QVRLHVNSPSSDQSASTPVGPRPLPAMKTLSSFISEHPEELVAAEDQSRS
GAFATSSASASAAATANASNGQQQTTKWKSLRAVMAYYCSLRRIKRNVAT
HKSHFQCSVIAYPRFASVN*
BS16478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-PF | 319 | CG43395-PF | 1..319 | 1..319 | 1682 | 100 | Plus |
Cngl-PD | 1955 | CG43395-PD | 1..146 | 1..146 | 751 | 97.9 | Plus |
Cngl-PI | 1942 | CG43395-PI | 1..142 | 1..142 | 747 | 100 | Plus |
Cngl-PE | 1970 | CG43395-PE | 1..142 | 1..142 | 747 | 100 | Plus |
Cngl-PJ | 1970 | CG43395-PJ | 1..142 | 1..142 | 747 | 100 | Plus |