Clone BS16478 Report

Search the DGRC for BS16478

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCngl-RF
Protein status:BS16478.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16478.3prime Sequence

855 bp (841 high quality bases) assembled on 2007-05-15

> BS16478.3prime
ATGGTCTAGAAAGCTTTTAGTTAACGCTAGCAAAACGCGGATACGCAATT
ACGGAACACTGAAAGTGGGACTTGTGGGTGGCAACGTTCCTCTTGATGCG
CCGCAGGGAGCAGTAGTAGGCCATCACGGCTCGCAGGCTCTTCCACTTCG
TTGTCTGCTGCTGGCCATTGGAGGCATTGGCAGTGGCGGCTGCGGATGCG
GATGCCGAGGAGGTGGCGAAGGCGCCACTCCGGGACTGATCCTCCGCTGC
CACAAGCTCCTCGGGATGCTCGCTGATGAACGACGAGAGGGTCTTCATCG
CTGGCAATGGCCTGGGACCCACCGGCGTGCTGGCGCTCTGGTCGGAGGAC
GGACTGTTCACATGGAGGCGCACCTGGCGCCGCTGACGGGCCTGGTGCGG
ATGCGGATACGGATGCGGATGCGTATGCGGATGTTGATGCGGTTGTGCCG
GCGTCAGTATAAGTCTATCCCTCTCAGTATACCTTAAACTAGTGGTGGTG
GGGCAGCCGCAGTGGTGCAGTTGCCCACTGGTTAGCGACGAGCTGCCGGA
TCGCTGGCTGGGACTCTTGCTGTCCGATGAGTGCGCCGCACTGTTGTTGT
CGTCATCGCGGACCATCTTGTGGTGGTGCCGCTTGTGATAGCCACCGTCG
CTGTGTCCGCCAGCACCACCGGATCCGCCGGCACCGCCTGCTCCGCCGCC
TCCTCCGCCACCGGAGATACTGGTGCCCGTGGGACTGATGACATCCGTGT
CGCTGTTGCAGTCGTGCACCTGACGGGCCACATCCTTGACAAACTTGCCC
GCTTCGTGCTCGTGCGCTTCCATCGTATATAGGCCCGTTGCAGTGGCCCC
CGACG

BS16478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18210-PA 960 CG18210-RA 122..960 855..17 4195 100 Minus
CG17762-PD 4413 tomosyn-RD 2571..2597 422..396 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-RF 5515 CG43395-RF 2371..3209 855..17 4195 100 Minus
Cngl-RE 11745 CG43395-RE 2371..2674 855..552 1520 100 Minus
Cngl-RD 11700 CG43395-RD 2371..2674 855..552 1520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15408039..15408574 17..552 2680 100 Plus
X 23542271 X 15410832..15411104 552..824 1365 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:59:54 has no hits.

BS16478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:59 Download gff for BS16478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18210-PA 122..960 17..855 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:50 Download gff for BS16478.3prime
Subject Subject Range Query Range Percent Splice Strand
cngl-RF 2337..3177 12..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:59 Download gff for BS16478.3prime
Subject Subject Range Query Range Percent Splice Strand
Cngl-RF 2371..3211 12..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:59 Download gff for BS16478.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15408039..15408573 17..551 100 <- Plus
X 15410832..15411103 552..823 100 <- Plus
X 15419963..15419994 824..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:50 Download gff for BS16478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15302072..15302606 17..551 100 <- Plus
arm_X 15304865..15305136 552..823 100 <- Plus
arm_X 15313996..15314027 824..855 100   Plus

BS16478.5prime Sequence

834 bp (756 high quality bases) assembled on 2007-05-15

> BS16478.5prime
GAAGTTATCAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATG
CATCCGCACACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAAC
TACGGCAGCACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCAC
TGCAACGGGCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGT
TTGTCAAGGATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGAT
GTCATCAGTCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGG
AGCAGGCGGTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTG
GCTATCACAAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAAC
AGTGCGGCGCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAG
CTCGTCGCTAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCA
CTAGTTTAAGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAA
CCGCATCAACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCA
GGCCCGTCAGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCG
ACCAGAGCGCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAG
ACCCTCTCGTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGA
GGATCAGTCCCGGAGTGGCGCCTTCGCCACCTCCTCGGCATCCGCATCCG
CAGCCGCCACTGCCAATGCCTCCAATGGCCAGCA

BS16478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG18210-PA 960 CG18210-RA 1..818 17..834 4090 100 Plus
CG17762-PD 4413 tomosyn-RD 2571..2597 571..597 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-RF 5515 CG43395-RF 2250..3067 17..834 4090 100 Plus
Cngl-RE 11745 CG43395-RE 2250..2674 17..441 2125 100 Plus
Cngl-RD 11700 CG43395-RD 2250..2674 17..441 2125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15408181..15408574 834..441 1970 100 Minus
X 23542271 X 15410832..15411104 441..169 1365 100 Minus
X 23542271 X 15419963..15420115 169..17 765 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:55:25 has no hits.

BS16478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:29 Download gff for BS16478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18210-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:44 Download gff for BS16478.5prime
Subject Subject Range Query Range Percent Splice Strand
cngl-RF 2211..3032 8..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:55 Download gff for BS16478.5prime
Subject Subject Range Query Range Percent Splice Strand
Cngl-RF 2245..3066 8..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:55 Download gff for BS16478.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15408182..15408573 442..833 100 <- Minus
X 15410832..15411103 170..441 100 <- Minus
X 15419963..15420120 8..169 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:44 Download gff for BS16478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15302215..15302606 442..833 100 <- Minus
arm_X 15304865..15305136 170..441 100 <- Minus
arm_X 15313996..15314153 8..169 97   Minus

BS16478.complete Sequence

992 bp assembled on 2007-05-07

GenBank Submission: FJ638149

> BS16478.complete
GAAGTTATCAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATG
CATCCGCACACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAAC
TACGGCAGCACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCAC
TGCAACGGGCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGT
TTGTCAAGGATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGAT
GTCATCAGTCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGG
AGCAGGCGGTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTG
GCTATCACAAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAAC
AGTGCGGCGCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAG
CTCGTCGCTAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCA
CTAGTTTAAGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAA
CCGCATCAACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCA
GGCCCGTCAGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCG
ACCAGAGCGCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAG
ACCCTCTCGTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGA
GGATCAGTCCCGGAGTGGCGCCTTCGCCACCTCCTCGGCATCCGCATCCG
CAGCCGCCACTGCCAATGCCTCCAATGGCCAGCAGCAGACAACGAAGTGG
AAGAGCCTGCGAGCCGTGATGGCCTACTACTGCTCCCTGCGGCGCATCAA
GAGGAACGTTGCCACCCACAAGTCCCACTTTCAGTGTTCCGTAATTGCGT
ATCCGCGTTTTGCTAGCGTTAACTAAAAGCTTTCTAGACCAT

BS16478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-RF 960 CG43395-PF 1..960 17..976 4800 100 Plus
Cngl-RE 5913 CG43395-PE 1..425 17..441 2125 100 Plus
Cngl-RD 5868 CG43395-PD 1..425 17..441 2125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-RF 5515 CG43395-RF 2250..3209 17..976 4800 100 Plus
Cngl-RE 11745 CG43395-RE 2250..2674 17..441 2125 100 Plus
Cngl-RD 11700 CG43395-RD 2250..2674 17..441 2125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15408039..15408574 976..441 2680 100 Minus
X 23542271 X 15410832..15411104 441..169 1365 100 Minus
X 23542271 X 15419963..15420115 169..17 765 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:11:19 has no hits.

BS16478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:10 Download gff for BS16478.complete
Subject Subject Range Query Range Percent Splice Strand
CG18210-RA 1..960 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:08 Download gff for BS16478.complete
Subject Subject Range Query Range Percent Splice Strand
CG18210-RA 1347..2304 17..974 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:07 Download gff for BS16478.complete
Subject Subject Range Query Range Percent Splice Strand
cngl-RF 2216..3173 17..974 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:10 Download gff for BS16478.complete
Subject Subject Range Query Range Percent Splice Strand
CG18210-RA 1342..2308 8..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:51 Download gff for BS16478.complete
Subject Subject Range Query Range Percent Splice Strand
Cngl-RF 2250..3207 17..974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:51 Download gff for BS16478.complete
Subject Subject Range Query Range Percent Splice Strand
X 15408041..15408573 442..974 100 <- Minus
X 15410832..15411103 170..441 100 <- Minus
X 15419963..15420115 17..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:07 Download gff for BS16478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15304865..15305136 170..441 100 <- Minus
arm_X 15313996..15314148 17..169 100   Minus
arm_X 15302074..15302606 442..974 100 <- Minus

BS16478.pep Sequence

Translation from 16 to 975

> BS16478.pep
MKLSVSAYRAHASAHKKILSSGYHSQLNYGSTGAAAASSSSSGATATGLY
TMEAHEHEAGKFVKDVARQVHDCNSDTDVISPTGTSISGGGGGGGAGGAG
GSGGAGGHSDGGYHKRHHHKMVRDDDNNSAAHSSDSKSPSQRSGSSSLTS
GQLHHCGCPTTTSLRYTERDRLILTPAQPHQHPHTHPHPYPHPHQARQRR
QVRLHVNSPSSDQSASTPVGPRPLPAMKTLSSFISEHPEELVAAEDQSRS
GAFATSSASASAAATANASNGQQQTTKWKSLRAVMAYYCSLRRIKRNVAT
HKSHFQCSVIAYPRFASVN*

BS16478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-PF 319 CG43395-PF 1..319 1..319 1682 100 Plus
Cngl-PD 1955 CG43395-PD 1..146 1..146 751 97.9 Plus
Cngl-PI 1942 CG43395-PI 1..142 1..142 747 100 Plus
Cngl-PE 1970 CG43395-PE 1..142 1..142 747 100 Plus
Cngl-PJ 1970 CG43395-PJ 1..142 1..142 747 100 Plus