Clone Sequence Records
BS16483.3prime Sequence
708 bp (636 high quality bases) assembled on 2007-05-15
> BS16483.3prime
ATGGTCTAGAAAGCTTTTAGGCCGGTGTGAGCCGGAAGCTGAGCGTGGCC
GACTCCGAGGCCCGGACTCGGACGGGCAGGTAAACCAGGGCAGGTGCGAA
CTGCATCTCGGAGTCCTGGTCGGCAGGCTGCAGGTGGAAGGCCTGCATCT
GATATGCTTCCTCTGCCCCATCCGGTTGGGCATAGCTGGCCGGCTTGCCA
ATGCCGTTGGCCAATTCCCCGCAGCCCTCGAAGGGCGAGGTGGCCGCGGA
TCGGTGGCCACCAGTTGCACTGCCCAATCCATTTGGCGTCGTTGGGGGCT
TTGAGGTGGATCGACGGCGTTGAATCTTGGGTGAAGTTGAGCTGGTTGCT
TTGGGGGAGGAGGCGGGAGGAGATCCGGCCCCAGTTGAGGGGGAACGAGA
TGCCACCTTGGGCGCTGAGGTGCTGAGATTGGTGGGCTCCAGTGGAGGCT
CTGTTTCTTCGGATTTAGCAGGAGGAGGTGCCACCATCGATTTGCTGGAC
TTGCTGCGTGATTTACCCGAACTTCTGGAGGGTTGTGGTGGCGGCGTCTC
CATGGGCAACTCTAGGCCCTCGCCTCCGTTGTTGAGCAGAGCATGCGATC
GCTCATGGATGAACAAGAAGGCGTAGTAGGGCGTGCTGAAGGGACACAGT
GAGCACTGGTACTCCTTGAACCGGGCCGACTGCTCGCCAAACATTCCAGG
GCATGGAA
BS16483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18265-PA | 3969 | CG18265-RA | 3286..3969 | 700..17 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18265-RC | 6143 | CG18265-RC | 3544..4236 | 708..16 | 3435 | 99.7 | Minus |
| CG18265-RB | 8180 | CG18265-RB | 3403..4095 | 708..16 | 3435 | 99.7 | Minus |
| CG18265-RA | 6404 | CG18265-RA | 3805..4497 | 708..16 | 3435 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17452684..17453376 | 708..16 | 3435 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:43:01 has no hits.
BS16483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:46:54 Download gff for
BS16483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18265-PA | 3280..3969 | 17..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:29 Download gff for
BS16483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18265-RA | 3805..4497 | 16..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:20 Download gff for
BS16483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18265-RA | 3805..4497 | 16..708 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:20 Download gff for
BS16483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17452684..17453376 | 16..708 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:29 Download gff for
BS16483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17445784..17446476 | 16..708 | 99 | | Minus |
BS16483.complete Sequence
4001 bp assembled on 2010-07-15
GenBank Submission: KX801488
> BS16483.complete
GAAGTTATCAGTCGACATGGCTGCATCCATATATGCCACCCCACCGCCAG
ATCTGAGCAGCGAGGACACTGCTCTCTCCGACGTCTCCAACTCATCGACA
CTCAACACGAACAGGAACAACCACACCAGCGGCAGCAACAGCAACAATCC
ACATGAAGCCGCAGGAGCAACACCCACAGCCACGTCAGCCACAACCAGAG
GAGCAACAGGAGCAGGAGGAGTGGAAAGCACTTCACCCGCCGACCATTTG
GTGCCGGCAATGGAGCTGGAACTGGACCCGAAGCCAGCGGGAAGCGGAGC
GAATGAGGCGGACCAATTGGAGGAGGCAGAAGATGGACGCAAAGATGTGG
ATGCAGAGGAGGAGGTGGGCGATGCCAACATGGCCACCATGGCGGCAGCC
ATGCAGCTGCAGATACTGGAGGCCCTAAGTGATGCGGCCAAGAAGCGACG
CAAGCAGCACAATCCCAGCCGCTTAGAGGCGCTCAATTTAAGTGGGGAAC
CCACTGGTGAAGTGGGTCAAAAGAAAGCAGACTCCTCCACCGTGGACTAC
GAGGACAAGTTGTCGAAGATGTTCCTTCCCAAGTCGATTGAGCAGCTAAA
GGAGACCTTCGAGATGCTGCAGCAGAGGAAGCAAGAGGAGGAGCCGCCGG
AAGCGGGAGAGGAAATGGAAGCGGAAACGGAAGCCATGGCAGACATATCA
GAATCCAGCAAGCAGCGCGAGAATCCATACCACACTTACTGCAAGCAGTG
CGGCGAGAGTTTCGAGACCGAGTTCAAGTTGAGCCTCCACATGTTGCAGG
ATCACGGCGAGGAAAGGTCCGGTGATCAGGATCCCTCAGACTTTCTGGCC
TCCATCAAGGTGAAGCTGGAGCGTGCCGACATTCCCAGTCCGCAACAGGA
GCAAAATATGCAGCACGACCTTACCAATGGTCATGGCAAGGACTTGGAAC
GGGAGCAGGAGCACTGGTTCCAGGCCATGCAGGCGCAGCATCATCCACAT
GGTCCACAAATGCCACCTGCTTTTCCCTTTCCACCGGAGGCAGCCTTGGG
ACCAGCTGGCTACCTGCCACTGCTCGGCATGTCCGGGTTTCCAGGAGTGG
ATGGTCTCAACCGCCCTCCATTGCGGATCTTCAATCCCGAGGCCTACTGT
GAGCTGTGCAACAAGGAGTTCTGCAACAAGTACTTCCTCAAGACGCACAA
GGCCAACAAGCATGGCATCTTTGATCCCGTTGGCGAATCGAGCTCCAGCA
ACACCTCCAGTCACCACAATAATAACAACAATAACATCACCAGTAGTAAC
AACAATACCAGTGGTCACCCCAATCCCAGTATGAGTTCCATGAGTCAAAT
GTTCCAGCTGCAGCGAGATGCTCAGGTGGCGAAACAGGATCCCACACCAG
CTGGCGGAGCATCGAATCCCGTGGCCTCGGTGCACTGCGACATCTGTTCC
AAGCGCTTCACCAACATATTCGCCATGCGTCGCCATCGGGCCAAGCAGCA
CGAGGCACAAGCAGCTGCCCAAGTTTCACCCAACTCCCAGACACCCATGC
AATCGCAATCGCATCGGGGAAGTCCCAACGAGCCATCGCAGCCAACTATA
AAGCAGGAAATGTCACAAGATGCGGAGATCAAGCCCTATCAGTTGCCCGA
GGGTTTCCGCGAGGACTTCACCCTGGAGCAGGAGGAGCTGAGCTTTGTGC
CACCGCCCCGGAAGTTACCCTCCCATCTGCAGCAACAGGCGAAAGACTCC
AACTTCAATCCCGATAAGCTACGTCGCCTGGGCGTCCAGTTTCCCGACTT
CTTCTGCGAGCTGTGCTGCCGGGAGTATGCCAATCGATACTTCCTACGCA
CTCACAAGTGGAAGCGCCACGGTCTGTTTGTGCCACCCGAAGACGTGGCA
CCACAGCCAGGCAGCAAGGATGAAGCCCAGATGGCCAGTGCTTGGCCCTT
CATGCCACTCAATCTGATGCTGGCCAAGGCAGCAGCAGCCACCATGGATC
AGCAGGAGCAGGAGCGCGAACCGGAGGTGGAAACGGATTCAGAGCAGCCC
AGTAAGAGGATCAAGTTGGAACAGGGACAGACACCGCCGGAGGGATACGA
CGAGGATAAGCTGAATGGTTCGGTGGTGGGCTTGCAGAATCTTCAGAAGT
TGCAGTCCATGTTGCAGCAACTGAACGACATCAATGGCAAGCGCCCGCTA
CCCTGTCATCTTTGTGGCCAGGAGCAGGAGAATCAGTATACTTTGAGGGC
TCATTTGATGACCGAACATGCTGGTCAGATGCAAATGCCCATGCCCATAC
CGATTCCACTGCCCGACCAGCAGGCCCCGCATCCCATGGCCAGTTTGTAC
CATGGCCAGGGAAATCCGCAAACTCCGCCGGCGCCAGGAGCCAGATCCCC
GCCAGGTTGTGATCTGCGCTGCCAGCAGTGCGATCGTGATTTCGCCACAC
CCCAGGAATTCAAGCAACATATCGCCGAGGTGCACTTGGGCAGAAACGGA
GGACTGAGCGGAAGTCCCCTGCGCGAGGGTTTCTTCACACCCGAACGCCC
AGTGGCGCCGTCAGCGGGCGGACCCGGAACCCCAGTCGCTCCTGCTGCAA
ATCGCCCACCTTATACCCTAACACCCACGAGCAGCTACTGTGAGATTTGC
AACAAGGAGCTATGCAACAAGTACTTCATGAAGACGCACATGCAGCGGAT
GCACGGCATCGAGATCGAGAATGGCGCCCAGATCGGTGGCGTTGTGTGCA
ACATATGCAACAAGGAGCTATGCAGCAAGTACTTCTTGCGGGTGCACAAA
CACAACACCCATGGCATTATCGAGGAGGGATCTCCACTGCCACAGCCGCG
AGGTCAGAATGGAGTCAAAGCGGATGCAGCCGCCGCCGTAGCAGCATCAC
AGCCATCGCAAGCGCAGCAGGATCAGGACCTCAATGTCTCACCACCCACA
GTGGAGGGGAGTGGCGGCAGTTCATCCAACTCGGCCCATGAGGTGTGCCC
ACTCTGCTCTCGCCAATTCCGCAGCTTTAAGTGGCTGCGATCCCATCTGA
TGAACGAACACGGAACCGCCGGAGTAGAACGCCTCCGGGAAATGGACACC
ACCCAATCCTCGACGCGCAGCAAGCCGAACAGTCCCACGCTCAAGATTCC
CAACGGAAGTGGCAGTAACCCAGGAGCAGCGGGTGCCGGAGCCGGAAATA
CCGCTCCCAATCTCGCCCAGGCCCTGCAAAACCTTAATGCCCAGCATATC
TTTGGCCAAATGCAACAGCAGCAGATTCCTAAGATGCCACCACTTCCATT
GCCTGGAATGTTTGGCGAGCAGTCGGCCCGGTTCAAGGAGTACCAGTGCT
CACTGTGTCCCTTCAGCACGCCCTACTACGCCTTCTTGTTCATCCATGAG
CGATCGCATGCTCTGCTCAACAACGGAGGCGAGGGCCTAGAGTTGCCCAT
GGAGACGCCGCCACCACAACCCTCCAGAAGTTCGGGTAAATCACGCAGCA
AGTCCAGCAAATCGATGGTGGCACCTCCTCCTGCTAAATCCGAAGAAACA
GAGCCTCCACTGGAGCCCACCAATCTCAGCACCTCAGCGCCCAAGGTGGC
ATCTCGTTCCCCCTCAACTGGGGCCGGATCTCCTCCCGCCTCCTCCCCCA
AAGCAACCAGCTCAACTTCACCCAAGATTCAACGCCGTCGATCCACCTCA
AAGCCCCCAACGACGCCAAATGGATTGGGCAGTGCAACTGGTGGCCACCG
ATCCGCGGCCACCTCGCCCTTCGAGGGCTGCGGGGAATTGGCCAACGGCA
TTGGCAAGCCGGCCAGCTATGCCCAACCGGATGGGGCAGAGGAAGCATAT
CAGATGCAGGCCTTCCACCTGCAGCCTGCCGACCAGGACTCCGAGATGCA
GTTCGCACCTGCCCTGGTTTACCTGCCCGTCCGAGTCCGGGCCTCGGAGT
CGGCCACGCTCAGCTTCCGGCTCACACCGGCCTAAAAGCTTTCTAGACCA
T
BS16483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18265-RC | 3969 | CG18265-PC | 1..3969 | 17..3985 | 19845 | 100 | Plus |
| CG18265-RB | 3969 | CG18265-PB | 1..3969 | 17..3985 | 19845 | 100 | Plus |
| CG18265-RA | 3969 | CG18265-PA | 1..3969 | 17..3985 | 19845 | 100 | Plus |
| CG18265-RC | 3969 | CG18265-PC | 1128..1183 | 2635..2690 | 190 | 89.3 | Plus |
| CG18265-RC | 3969 | CG18265-PC | 2619..2674 | 1144..1199 | 190 | 89.3 | Plus |
| CG18265-RB | 3969 | CG18265-PB | 1128..1183 | 2635..2690 | 190 | 89.3 | Plus |
| CG18265-RB | 3969 | CG18265-PB | 2619..2674 | 1144..1199 | 190 | 89.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18265-RC | 6143 | CG18265-RC | 267..4236 | 17..3986 | 19850 | 100 | Plus |
| CG18265-RB | 8180 | CG18265-RB | 126..4095 | 17..3986 | 19850 | 100 | Plus |
| CG18265-RA | 6404 | CG18265-RA | 528..4497 | 17..3986 | 19850 | 100 | Plus |
| CG18265-RC | 6143 | CG18265-RC | 1394..1449 | 2635..2690 | 190 | 89.3 | Plus |
| CG18265-RC | 6143 | CG18265-RC | 2885..2940 | 1144..1199 | 190 | 89.3 | Plus |
| CG18265-RB | 8180 | CG18265-RB | 1253..1308 | 2635..2690 | 190 | 89.3 | Plus |
| CG18265-RB | 8180 | CG18265-RB | 2744..2799 | 1144..1199 | 190 | 89.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17449407..17453376 | 17..3986 | 19850 | 100 | Plus |
| 3L | 28110227 | 3L | 17450534..17450589 | 2635..2690 | 190 | 89.3 | Plus |
| 3L | 28110227 | 3L | 17452025..17452080 | 1144..1199 | 190 | 89.3 | Plus |
Blast to na_te.dros performed 2014-11-28 04:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6867 | 103..217 | 244 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6859 | 103..227 | 240 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6823 | 116..221 | 230 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2467 | 103..214 | 228 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6900 | 103..235 | 221 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2441 | 103..215 | 199 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6920 | 13..231 | 199 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6851..6952 | 103..203 | 183 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2727..2856 | 76..207 | 177 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1595 | 1244..1323 | 148 | 65 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7950..8018 | 98..171 | 143 | 68.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3381 | 91..208 | 143 | 62.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9394..9462 | 98..171 | 143 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1598 | 77..159 | 126 | 64.3 | Plus |
BS16483.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:21 Download gff for
BS16483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18265-RA | 518..4484 | 17..3983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:03 Download gff for
BS16483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18265-RA | 528..4494 | 17..3983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:15 Download gff for
BS16483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18265-RA | 528..4494 | 17..3983 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:15 Download gff for
BS16483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17449407..17453373 | 17..3983 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:03 Download gff for
BS16483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17442507..17446473 | 17..3983 | 100 | | Plus |
BS16483.pep Sequence
Translation from 16 to 3984
> BS16483.pep
MAASIYATPPPDLSSEDTALSDVSNSSTLNTNRNNHTSGSNSNNPHEAAG
ATPTATSATTRGATGAGGVESTSPADHLVPAMELELDPKPAGSGANEADQ
LEEAEDGRKDVDAEEEVGDANMATMAAAMQLQILEALSDAAKKRRKQHNP
SRLEALNLSGEPTGEVGQKKADSSTVDYEDKLSKMFLPKSIEQLKETFEM
LQQRKQEEEPPEAGEEMEAETEAMADISESSKQRENPYHTYCKQCGESFE
TEFKLSLHMLQDHGEERSGDQDPSDFLASIKVKLERADIPSPQQEQNMQH
DLTNGHGKDLEREQEHWFQAMQAQHHPHGPQMPPAFPFPPEAALGPAGYL
PLLGMSGFPGVDGLNRPPLRIFNPEAYCELCNKEFCNKYFLKTHKANKHG
IFDPVGESSSSNTSSHHNNNNNNITSSNNNTSGHPNPSMSSMSQMFQLQR
DAQVAKQDPTPAGGASNPVASVHCDICSKRFTNIFAMRRHRAKQHEAQAA
AQVSPNSQTPMQSQSHRGSPNEPSQPTIKQEMSQDAEIKPYQLPEGFRED
FTLEQEELSFVPPPRKLPSHLQQQAKDSNFNPDKLRRLGVQFPDFFCELC
CREYANRYFLRTHKWKRHGLFVPPEDVAPQPGSKDEAQMASAWPFMPLNL
MLAKAAAATMDQQEQEREPEVETDSEQPSKRIKLEQGQTPPEGYDEDKLN
GSVVGLQNLQKLQSMLQQLNDINGKRPLPCHLCGQEQENQYTLRAHLMTE
HAGQMQMPMPIPIPLPDQQAPHPMASLYHGQGNPQTPPAPGARSPPGCDL
RCQQCDRDFATPQEFKQHIAEVHLGRNGGLSGSPLREGFFTPERPVAPSA
GGPGTPVAPAANRPPYTLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEI
ENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEEGSPLPQPRGQNGV
KADAAAAVAASQPSQAQQDQDLNVSPPTVEGSGGSSSNSAHEVCPLCSRQ
FRSFKWLRSHLMNEHGTAGVERLREMDTTQSSTRSKPNSPTLKIPNGSGS
NPGAAGAGAGNTAPNLAQALQNLNAQHIFGQMQQQQIPKMPPLPLPGMFG
EQSARFKEYQCSLCPFSTPYYAFLFIHERSHALLNNGGEGLELPMETPPP
QPSRSSGKSRSKSSKSMVAPPPAKSEETEPPLEPTNLSTSAPKVASRSPS
TGAGSPPASSPKATSSTSPKIQRRRSTSKPPTTPNGLGSATGGHRSAATS
PFEGCGELANGIGKPASYAQPDGAEEAYQMQAFHLQPADQDSEMQFAPAL
VYLPVRVRASESATLSFRLTPA*
BS16483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18265-PC | 1322 | CG18265-PC | 1..1322 | 1..1322 | 7030 | 100 | Plus |
| CG18265-PB | 1322 | CG18265-PB | 1..1322 | 1..1322 | 7030 | 100 | Plus |
| CG18265-PA | 1322 | CG18265-PA | 1..1322 | 1..1322 | 7030 | 100 | Plus |
