Clone BS16486 Report

Search the DGRC for BS16486

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:86
Vector:pDNR-Dual
Associated Gene/Transcriptdpr9-RA
Protein status:BS16486.pep: full length peptide match
Sequenced Size:1841

Clone Sequence Records

BS16486.complete Sequence

1841 bp assembled on 2009-12-07

GenBank Submission: KX805589

> BS16486.complete
GAAGTTATCAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGC
AGCATCAACGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCC
AAAGCCAGGCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTC
ACCGCCATACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAA
CCACCGCTGACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGC
AGCAGCGACATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAG
CTGTTGCAGCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCA
TGCTCGTCGTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCT
CAGCGCGACTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCT
GCCCAACGAAGGAGTGGGAGGATCGGCAGCTGGAGCGGGCGAGGCGGCTG
CTCCCGGTCCCACTGGTATCGACGGAAGCGGAAGCGGCAACAATAGCAGC
GGAAATAACAAAAACGGCCATCCCGCTGCCGGATCAGGCGCTGCCTCCGA
ATCCGCTGCGCTGACTACCGATGCCAGTCGCAGCTCCGTTGGCGGCGCAA
CCACCATCACGGGAATCCCGAGCAGCAGCCTACACAAGGCCAGCAGCGCC
AGCAGCAACACATTCTCCTCCCAGCTTGCATCCGGCTTCCATCGCAACAG
CATCGATCTGGAGGAGGCCCGCAATGCGGGTCCCTATTTCGACAAGGCCT
TCTCCAAGAACGTCACCGCCCTGCTGGGCAAGACGGCCTATTTGAACTGC
CGAGTCAAGAATCTGGGCAATAAGACGATGTTGCTTCAGGTGTCGTGGGT
GCGACATCGGGACATACATTTGCTGACAGTTGGCCGATACACATACACGT
CGGATCAGCGCTTTCGGGCCATTCATCAGCCGCAAACTGAAGACTGGATG
CTGCAAATCAAGTACCCGCAACATCGAGATTCCGGCATCTACGAGTGCCA
GGTATCGACTACACCCCACATGAGTCACTACATTCACCTGAATGTCGTTG
AACCCTCGACGGAAATCATCGGTGCACCCGATCTGTATATAGAAAGTGGT
TCCACTATAAACCTTACCTGTATCATACAAAACTCACCGGAGCCGCCAGC
CTATATCTTCTGGAATCATAATAATGCTTTTCCCTCTCACCCGCAGATCA
TCAACTATGATTCGCCGCGCGGAGGCGTATCCGTGGTCACCAATAAGGGC
GATACGACCACATCGTTCCTCCTAATTAAATCGGCGCGTCCATCGGACTC
CGGGCATTATCAGTGTAATCCATCAAATGCAAAGCCCAAAAGCGTTACAG
TACATGTGCTCAATGGTGTTTCCCATTCCGTTTCCAGGGGAGTTCCCAGC
AGCAATGCAGCACGCGGCACCAGTGCATCCTCGCCCCTCGCCCACTCGCT
GTCTGTTTGTGTACCTGTTTGTGTGCTTCTGCAGCTGGGCGCTTGCAGGT
GGATCGCTGCGCTGCTGGGCGCCGCTCTGGCCACGCCCCCACCGCTCCGT
TCCACCCGGCGGGCGACGGGGGAGCGTCCTGGATCGCCAGGATGTGCGCC
AATCGCCTGCGACATGCGGCACTTCCTCGCCAGCGTTCTGAGGTGGCAAT
GGCGATGGTGTTGGCGCTGGCACTGGAAAGGTACGCAACAGCAGGATCCA
CGGCATTATCTGAAGCCACAATCACGCAGGGTGGCGGCAGCGTGTAGGCA
GCCCTACGAGGCGGACATAAGGTGAAAGCTTTCTAGACCAT

BS16486.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-RB 1809 CG33485-PB 1..1809 17..1825 9045 100 Plus
dpr9-RA 1809 CG33485-PA 1..1809 17..1825 9045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-RB 4826 CG33485-RB 764..2572 17..1825 9045 100 Plus
dpr9-RA 3272 CG33485-RA 764..2572 17..1825 9045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15066596..15067085 877..388 2450 100 Minus
3R 32079331 3R 15057184..15057594 1825..1415 2055 100 Minus
3R 32079331 3R 15071452..15071824 389..17 1865 100 Minus
3R 32079331 3R 15063120..15063343 1100..877 1120 100 Minus
3R 32079331 3R 15061457..15061645 1417..1229 945 100 Minus
3R 32079331 3R 15062351..15062479 1228..1100 645 100 Minus
Blast to na_te.dros performed 2014-11-28 07:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3269..3378 20..126 164 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1587 217..277 134 68.9 Plus
TART-A 13424 TART-A 13424bp 8939..8982 232..275 130 77.3 Plus
BS 5142 BS BS 5142bp 2045..2121 223..299 124 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2368 647..710 119 67.2 Plus

BS16486.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:01 Download gff for BS16486.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 1..1809 17..1825 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:30 Download gff for BS16486.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 763..2570 17..1824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:08 Download gff for BS16486.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 763..2570 17..1824 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:10 Download gff for BS16486.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 763..2570 17..1824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:24 Download gff for BS16486.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 764..2571 17..1824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:24 Download gff for BS16486.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15071452..15071824 17..389 100   Minus
3R 15057185..15057593 1416..1824 100 <- Minus
3R 15061459..15061645 1229..1415 100 <- Minus
3R 15062351..15062478 1101..1228 100 <- Minus
3R 15063120..15063342 878..1100 100 <- Minus
3R 15066596..15067083 390..877 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:08 Download gff for BS16486.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10887181..10887367 1229..1415 100 <- Minus
arm_3R 10888073..10888200 1101..1228 100 <- Minus
arm_3R 10882907..10883315 1416..1824 100 <- Minus
arm_3R 10888842..10889064 878..1100 100 <- Minus
arm_3R 10892318..10892805 390..877 100 <- Minus
arm_3R 10897174..10897546 17..389 100   Minus

BS16486.3prime Sequence

870 bp (808 high quality bases) assembled on 2007-05-15

> BS16486.3prime
ATGGTCTAGAAAGCTTTCACCTTATGTCCGCCTCGTAGGGCTGCCTACAC
GCTGCCGCCACCCTGCGTGATTGTGGCTTCAGATAATGCCGTGGATCCTG
CTGTTGCGTACCTTTCCAGTGCCAGCGCCAACACCATCGCCATTGCCACC
TCAGAACGCTGGCGAGGAAGTGCCGCATGTCGCAGGCGATTGGCGCACAT
CCTGGCGATCCAGGACGCTCCCCCGTCGCCCGCCGGGTGGAACGGAGCGG
TGGGGGCGTGGCCAGAGCGGCGCCCAGCAGCGCAGCGATCCACCTGCAAG
CGCCCAGCTGCAGAAGCACACAAACAGGTACACAAACAGACAGCGAGTGG
GCGAGGGGCGAGGATGCACTGGTGCCGCGTGCTGCATTGCTGCTGGGAAC
TCCCCTGGAAACGGAATGGGAAACACCATTGAGCACATGTACTGTAACGC
TTTTGGGCTTTGCATTTGATGGATTACACTGATAATGCCCGGAGTCCGAT
GGACGCGCCGATTTAATTAGGAGGAACGATGTGGTCGTATCGCCCTTATT
GGTGACCACGGATACGCCTCCGCGCGGCGAATCATAGTTGATGATCTGCG
GGTGAGAGGGAAAAGCATTATTATGATTCCAGAAGATATAGGCTGGCGGC
TCCGGTGAGTTTTGTATGATACAGGTAAGGTTTATAGTGGAACCACTTTC
TATATACAGATCGGGTGCACCGATGATTTCCGTCGAGGGTTCAACGACAT
TCAGGTGAATGTAGTGACTCATGTGGGGTGTAGTCGATACCTGGCACTCG
TAGATGCCGGAATCTCGATGTTGCGGGTACTTGATTTGCAGCATCCAGTC
TTCAGTTTGCGGCTGATGAA

BS16486.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33485-PA 1809 dpr9-RA 956..1809 870..17 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-RB 4826 CG33485-RB 1719..2572 870..17 4270 100 Minus
dpr9-RA 3272 CG33485-RA 1719..2572 870..17 4270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15057184..15057594 17..427 2055 100 Plus
3R 32079331 3R 15061457..15061645 425..613 945 100 Plus
3R 32079331 3R 15062351..15062479 614..742 645 100 Plus
3R 32079331 3R 15063120..15063248 742..870 645 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:07:01 has no hits.

BS16486.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:06 Download gff for BS16486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33485-PA 958..1809 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:28 Download gff for BS16486.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 1718..2574 12..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:29 Download gff for BS16486.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 1719..2575 12..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:29 Download gff for BS16486.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15057181..15057593 12..426 99 <- Plus
3R 15061459..15061645 427..613 100 <- Plus
3R 15062351..15062478 614..741 100 <- Plus
3R 15063120..15063248 742..870 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:28 Download gff for BS16486.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10882903..10883315 12..426 99 <- Plus
arm_3R 10887181..10887367 427..613 100 <- Plus
arm_3R 10888073..10888200 614..741 100 <- Plus
arm_3R 10888842..10888970 742..870 100   Plus

BS16486.5prime Sequence

865 bp (761 high quality bases) assembled on 2007-05-15

> BS16486.5prime
GAAGTTATCAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGC
AGCATCAACGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCC
AAAGCCAGGCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTC
ACCGCCATACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAA
CCACCGCTGACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGC
AGCAGCGACATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAG
CTGTTGCAGCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCA
TGCTCGTCGTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCT
CAGCGCGACTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCT
GCCCAACGAAGGAGTGGGAGGATCGGCAGCTGGAGCGGGCGAGGCGGCTG
CTCCCGGTCCCACTGGTATCGACGGAAGCGGAAGCGGCAACAATAGCAGC
GGAAATAACAAAAACGGCCATCCCGCTGCCGGATCAGGCGCTGCCTCCGA
ATCCGCTGCGCTGACTACCGATGCCAGTCGCAGCTCCGTTGGCGGCGCAA
CCACCATCACGGGAATCCCGAGCAGCAGCCTACACAAGGCCAGCAGCGCC
AGCAGCAACACATTCTCCTCCCAGCTTGCATCCGGCTTCCATCGCAACAG
CATCGATCTGGAGGAGGCCCGCAATGCGGGTCCCTATTTCGACAAGGCCC
TCTCCAAGAACGTCACCGCCCTGCTGGGCAAGACGGCCTATTTGAACTGC
CGAGTCAAGAATCTG

BS16486.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33485-PA 1809 dpr9-RA 1..849 17..865 4220 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-RB 4826 CG33485-RB 764..1612 17..865 4230 99.9 Plus
dpr9-RA 3272 CG33485-RA 764..1612 17..865 4230 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15066608..15067085 865..388 2375 99.8 Minus
3R 32079331 3R 15071452..15071824 389..17 1865 100 Minus
Blast to na_te.dros performed 2015-02-04 20:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3269..3378 20..126 164 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1587 217..277 134 68.9 Plus
TART-A 13424 TART-A 13424bp 8939..8982 232..275 130 77.3 Plus
BS 5142 BS BS 5142bp 2045..2121 223..299 124 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2368 647..710 119 67.2 Plus

BS16486.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:12 Download gff for BS16486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33485-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:28 Download gff for BS16486.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 763..1611 17..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:36 Download gff for BS16486.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 764..1612 17..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:36 Download gff for BS16486.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15066608..15067083 390..865 99 <- Minus
3R 15071452..15071824 17..389 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:28 Download gff for BS16486.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10892330..10892805 390..865 99 <- Minus
arm_3R 10897174..10897546 17..389 100   Minus

BS16486.pep Sequence

Translation from 16 to 1824

> BS16486.pep
MATFQMEMRQQQHQRTNLRQRAAAVATSKARRQRQHHLQPESTDSPPYST
DCIRLWPGCGPTTADRVNGNPPTCNNTSSSDIGGNISGNTSNRISCCSCN
FGRQRALIMLSMLVVVMALMSGNGVYAAQRDSYNSKDMSSSNNALPNEGV
GGSAAGAGEAAAPGPTGIDGSGSGNNSSGNNKNGHPAAGSGAASESAALT
TDASRSSVGGATTITGIPSSSLHKASSASSNTFSSQLASGFHRNSIDLEE
ARNAGPYFDKAFSKNVTALLGKTAYLNCRVKNLGNKTMLLQVSWVRHRDI
HLLTVGRYTYTSDQRFRAIHQPQTEDWMLQIKYPQHRDSGIYECQVSTTP
HMSHYIHLNVVEPSTEIIGAPDLYIESGSTINLTCIIQNSPEPPAYIFWN
HNNAFPSHPQIINYDSPRGGVSVVTNKGDTTTSFLLIKSARPSDSGHYQC
NPSNAKPKSVTVHVLNGVSHSVSRGVPSSNAARGTSASSPLAHSLSVCVP
VCVLLQLGACRWIAALLGAALATPPPLRSTRRATGERPGSPGCAPIACDM
RHFLASVLRWQWRWCWRWHWKGTQQQDPRHYLKPQSRRVAAACRQPYEAD
IR*

BS16486.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-PB 602 CG33485-PB 1..602 1..602 3209 100 Plus
dpr9-PA 602 CG33485-PA 1..602 1..602 3209 100 Plus
dpr8-PB 344 CG32600-PB 33..303 247..534 736 51.4 Plus
dpr6-PE 283 CG14162-PE 73..274 256..467 732 64.2 Plus
dpr6-PA 283 CG14162-PA 73..274 256..467 732 64.2 Plus