Clone Sequence Records
BS16486.complete Sequence
1841 bp assembled on 2009-12-07
GenBank Submission: KX805589
> BS16486.complete
GAAGTTATCAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGC
AGCATCAACGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCC
AAAGCCAGGCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTC
ACCGCCATACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAA
CCACCGCTGACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGC
AGCAGCGACATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAG
CTGTTGCAGCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCA
TGCTCGTCGTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCT
CAGCGCGACTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCT
GCCCAACGAAGGAGTGGGAGGATCGGCAGCTGGAGCGGGCGAGGCGGCTG
CTCCCGGTCCCACTGGTATCGACGGAAGCGGAAGCGGCAACAATAGCAGC
GGAAATAACAAAAACGGCCATCCCGCTGCCGGATCAGGCGCTGCCTCCGA
ATCCGCTGCGCTGACTACCGATGCCAGTCGCAGCTCCGTTGGCGGCGCAA
CCACCATCACGGGAATCCCGAGCAGCAGCCTACACAAGGCCAGCAGCGCC
AGCAGCAACACATTCTCCTCCCAGCTTGCATCCGGCTTCCATCGCAACAG
CATCGATCTGGAGGAGGCCCGCAATGCGGGTCCCTATTTCGACAAGGCCT
TCTCCAAGAACGTCACCGCCCTGCTGGGCAAGACGGCCTATTTGAACTGC
CGAGTCAAGAATCTGGGCAATAAGACGATGTTGCTTCAGGTGTCGTGGGT
GCGACATCGGGACATACATTTGCTGACAGTTGGCCGATACACATACACGT
CGGATCAGCGCTTTCGGGCCATTCATCAGCCGCAAACTGAAGACTGGATG
CTGCAAATCAAGTACCCGCAACATCGAGATTCCGGCATCTACGAGTGCCA
GGTATCGACTACACCCCACATGAGTCACTACATTCACCTGAATGTCGTTG
AACCCTCGACGGAAATCATCGGTGCACCCGATCTGTATATAGAAAGTGGT
TCCACTATAAACCTTACCTGTATCATACAAAACTCACCGGAGCCGCCAGC
CTATATCTTCTGGAATCATAATAATGCTTTTCCCTCTCACCCGCAGATCA
TCAACTATGATTCGCCGCGCGGAGGCGTATCCGTGGTCACCAATAAGGGC
GATACGACCACATCGTTCCTCCTAATTAAATCGGCGCGTCCATCGGACTC
CGGGCATTATCAGTGTAATCCATCAAATGCAAAGCCCAAAAGCGTTACAG
TACATGTGCTCAATGGTGTTTCCCATTCCGTTTCCAGGGGAGTTCCCAGC
AGCAATGCAGCACGCGGCACCAGTGCATCCTCGCCCCTCGCCCACTCGCT
GTCTGTTTGTGTACCTGTTTGTGTGCTTCTGCAGCTGGGCGCTTGCAGGT
GGATCGCTGCGCTGCTGGGCGCCGCTCTGGCCACGCCCCCACCGCTCCGT
TCCACCCGGCGGGCGACGGGGGAGCGTCCTGGATCGCCAGGATGTGCGCC
AATCGCCTGCGACATGCGGCACTTCCTCGCCAGCGTTCTGAGGTGGCAAT
GGCGATGGTGTTGGCGCTGGCACTGGAAAGGTACGCAACAGCAGGATCCA
CGGCATTATCTGAAGCCACAATCACGCAGGGTGGCGGCAGCGTGTAGGCA
GCCCTACGAGGCGGACATAAGGTGAAAGCTTTCTAGACCAT
BS16486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-RB | 1809 | CG33485-PB | 1..1809 | 17..1825 | 9045 | 100 | Plus |
dpr9-RA | 1809 | CG33485-PA | 1..1809 | 17..1825 | 9045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-RB | 4826 | CG33485-RB | 764..2572 | 17..1825 | 9045 | 100 | Plus |
dpr9-RA | 3272 | CG33485-RA | 764..2572 | 17..1825 | 9045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15066596..15067085 | 877..388 | 2450 | 100 | Minus |
3R | 32079331 | 3R | 15057184..15057594 | 1825..1415 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 15071452..15071824 | 389..17 | 1865 | 100 | Minus |
3R | 32079331 | 3R | 15063120..15063343 | 1100..877 | 1120 | 100 | Minus |
3R | 32079331 | 3R | 15061457..15061645 | 1417..1229 | 945 | 100 | Minus |
3R | 32079331 | 3R | 15062351..15062479 | 1228..1100 | 645 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 07:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3378 | 20..126 | 164 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1587 | 217..277 | 134 | 68.9 | Plus |
TART-A | 13424 | TART-A 13424bp | 8939..8982 | 232..275 | 130 | 77.3 | Plus |
BS | 5142 | BS BS 5142bp | 2045..2121 | 223..299 | 124 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2368 | 647..710 | 119 | 67.2 | Plus |
BS16486.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:01 Download gff for
BS16486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 1..1809 | 17..1825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:30 Download gff for
BS16486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 763..2570 | 17..1824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:08 Download gff for
BS16486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 763..2570 | 17..1824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:10 Download gff for
BS16486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 763..2570 | 17..1824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:24 Download gff for
BS16486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 764..2571 | 17..1824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:24 Download gff for
BS16486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15071452..15071824 | 17..389 | 100 | | Minus |
3R | 15057185..15057593 | 1416..1824 | 100 | <- | Minus |
3R | 15061459..15061645 | 1229..1415 | 100 | <- | Minus |
3R | 15062351..15062478 | 1101..1228 | 100 | <- | Minus |
3R | 15063120..15063342 | 878..1100 | 100 | <- | Minus |
3R | 15066596..15067083 | 390..877 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:08 Download gff for
BS16486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10887181..10887367 | 1229..1415 | 100 | <- | Minus |
arm_3R | 10888073..10888200 | 1101..1228 | 100 | <- | Minus |
arm_3R | 10882907..10883315 | 1416..1824 | 100 | <- | Minus |
arm_3R | 10888842..10889064 | 878..1100 | 100 | <- | Minus |
arm_3R | 10892318..10892805 | 390..877 | 100 | <- | Minus |
arm_3R | 10897174..10897546 | 17..389 | 100 | | Minus |
BS16486.3prime Sequence
870 bp (808 high quality bases) assembled on 2007-05-15
> BS16486.3prime
ATGGTCTAGAAAGCTTTCACCTTATGTCCGCCTCGTAGGGCTGCCTACAC
GCTGCCGCCACCCTGCGTGATTGTGGCTTCAGATAATGCCGTGGATCCTG
CTGTTGCGTACCTTTCCAGTGCCAGCGCCAACACCATCGCCATTGCCACC
TCAGAACGCTGGCGAGGAAGTGCCGCATGTCGCAGGCGATTGGCGCACAT
CCTGGCGATCCAGGACGCTCCCCCGTCGCCCGCCGGGTGGAACGGAGCGG
TGGGGGCGTGGCCAGAGCGGCGCCCAGCAGCGCAGCGATCCACCTGCAAG
CGCCCAGCTGCAGAAGCACACAAACAGGTACACAAACAGACAGCGAGTGG
GCGAGGGGCGAGGATGCACTGGTGCCGCGTGCTGCATTGCTGCTGGGAAC
TCCCCTGGAAACGGAATGGGAAACACCATTGAGCACATGTACTGTAACGC
TTTTGGGCTTTGCATTTGATGGATTACACTGATAATGCCCGGAGTCCGAT
GGACGCGCCGATTTAATTAGGAGGAACGATGTGGTCGTATCGCCCTTATT
GGTGACCACGGATACGCCTCCGCGCGGCGAATCATAGTTGATGATCTGCG
GGTGAGAGGGAAAAGCATTATTATGATTCCAGAAGATATAGGCTGGCGGC
TCCGGTGAGTTTTGTATGATACAGGTAAGGTTTATAGTGGAACCACTTTC
TATATACAGATCGGGTGCACCGATGATTTCCGTCGAGGGTTCAACGACAT
TCAGGTGAATGTAGTGACTCATGTGGGGTGTAGTCGATACCTGGCACTCG
TAGATGCCGGAATCTCGATGTTGCGGGTACTTGATTTGCAGCATCCAGTC
TTCAGTTTGCGGCTGATGAA
BS16486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33485-PA | 1809 | dpr9-RA | 956..1809 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-RB | 4826 | CG33485-RB | 1719..2572 | 870..17 | 4270 | 100 | Minus |
dpr9-RA | 3272 | CG33485-RA | 1719..2572 | 870..17 | 4270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15057184..15057594 | 17..427 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 15061457..15061645 | 425..613 | 945 | 100 | Plus |
3R | 32079331 | 3R | 15062351..15062479 | 614..742 | 645 | 100 | Plus |
3R | 32079331 | 3R | 15063120..15063248 | 742..870 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:01 has no hits.
BS16486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:06 Download gff for
BS16486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33485-PA | 958..1809 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:28 Download gff for
BS16486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 1718..2574 | 12..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:29 Download gff for
BS16486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 1719..2575 | 12..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:29 Download gff for
BS16486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15057181..15057593 | 12..426 | 99 | <- | Plus |
3R | 15061459..15061645 | 427..613 | 100 | <- | Plus |
3R | 15062351..15062478 | 614..741 | 100 | <- | Plus |
3R | 15063120..15063248 | 742..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:28 Download gff for
BS16486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10882903..10883315 | 12..426 | 99 | <- | Plus |
arm_3R | 10887181..10887367 | 427..613 | 100 | <- | Plus |
arm_3R | 10888073..10888200 | 614..741 | 100 | <- | Plus |
arm_3R | 10888842..10888970 | 742..870 | 100 | | Plus |
BS16486.5prime Sequence
865 bp (761 high quality bases) assembled on 2007-05-15
> BS16486.5prime
GAAGTTATCAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGC
AGCATCAACGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCC
AAAGCCAGGCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTC
ACCGCCATACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAA
CCACCGCTGACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGC
AGCAGCGACATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAG
CTGTTGCAGCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCA
TGCTCGTCGTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCT
CAGCGCGACTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCT
GCCCAACGAAGGAGTGGGAGGATCGGCAGCTGGAGCGGGCGAGGCGGCTG
CTCCCGGTCCCACTGGTATCGACGGAAGCGGAAGCGGCAACAATAGCAGC
GGAAATAACAAAAACGGCCATCCCGCTGCCGGATCAGGCGCTGCCTCCGA
ATCCGCTGCGCTGACTACCGATGCCAGTCGCAGCTCCGTTGGCGGCGCAA
CCACCATCACGGGAATCCCGAGCAGCAGCCTACACAAGGCCAGCAGCGCC
AGCAGCAACACATTCTCCTCCCAGCTTGCATCCGGCTTCCATCGCAACAG
CATCGATCTGGAGGAGGCCCGCAATGCGGGTCCCTATTTCGACAAGGCCC
TCTCCAAGAACGTCACCGCCCTGCTGGGCAAGACGGCCTATTTGAACTGC
CGAGTCAAGAATCTG
BS16486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33485-PA | 1809 | dpr9-RA | 1..849 | 17..865 | 4220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-RB | 4826 | CG33485-RB | 764..1612 | 17..865 | 4230 | 99.9 | Plus |
dpr9-RA | 3272 | CG33485-RA | 764..1612 | 17..865 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15066608..15067085 | 865..388 | 2375 | 99.8 | Minus |
3R | 32079331 | 3R | 15071452..15071824 | 389..17 | 1865 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 20:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3378 | 20..126 | 164 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1587 | 217..277 | 134 | 68.9 | Plus |
TART-A | 13424 | TART-A 13424bp | 8939..8982 | 232..275 | 130 | 77.3 | Plus |
BS | 5142 | BS BS 5142bp | 2045..2121 | 223..299 | 124 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2368 | 647..710 | 119 | 67.2 | Plus |
BS16486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:12 Download gff for
BS16486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33485-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:28 Download gff for
BS16486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 763..1611 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:36 Download gff for
BS16486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 764..1612 | 17..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:36 Download gff for
BS16486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15066608..15067083 | 390..865 | 99 | <- | Minus |
3R | 15071452..15071824 | 17..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:28 Download gff for
BS16486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10892330..10892805 | 390..865 | 99 | <- | Minus |
arm_3R | 10897174..10897546 | 17..389 | 100 | | Minus |
BS16486.pep Sequence
Translation from 16 to 1824
> BS16486.pep
MATFQMEMRQQQHQRTNLRQRAAAVATSKARRQRQHHLQPESTDSPPYST
DCIRLWPGCGPTTADRVNGNPPTCNNTSSSDIGGNISGNTSNRISCCSCN
FGRQRALIMLSMLVVVMALMSGNGVYAAQRDSYNSKDMSSSNNALPNEGV
GGSAAGAGEAAAPGPTGIDGSGSGNNSSGNNKNGHPAAGSGAASESAALT
TDASRSSVGGATTITGIPSSSLHKASSASSNTFSSQLASGFHRNSIDLEE
ARNAGPYFDKAFSKNVTALLGKTAYLNCRVKNLGNKTMLLQVSWVRHRDI
HLLTVGRYTYTSDQRFRAIHQPQTEDWMLQIKYPQHRDSGIYECQVSTTP
HMSHYIHLNVVEPSTEIIGAPDLYIESGSTINLTCIIQNSPEPPAYIFWN
HNNAFPSHPQIINYDSPRGGVSVVTNKGDTTTSFLLIKSARPSDSGHYQC
NPSNAKPKSVTVHVLNGVSHSVSRGVPSSNAARGTSASSPLAHSLSVCVP
VCVLLQLGACRWIAALLGAALATPPPLRSTRRATGERPGSPGCAPIACDM
RHFLASVLRWQWRWCWRWHWKGTQQQDPRHYLKPQSRRVAAACRQPYEAD
IR*
BS16486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-PB | 602 | CG33485-PB | 1..602 | 1..602 | 3209 | 100 | Plus |
dpr9-PA | 602 | CG33485-PA | 1..602 | 1..602 | 3209 | 100 | Plus |
dpr8-PB | 344 | CG32600-PB | 33..303 | 247..534 | 736 | 51.4 | Plus |
dpr6-PE | 283 | CG14162-PE | 73..274 | 256..467 | 732 | 64.2 | Plus |
dpr6-PA | 283 | CG14162-PA | 73..274 | 256..467 | 732 | 64.2 | Plus |