Clone BS16488 Report

Search the DGRC for BS16488

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:88
Vector:pDNR-Dual
Associated Gene/Transcriptvir-1-RC
Protein status:BS16488.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16488.3prime Sequence

735 bp (735 high quality bases) assembled on 2007-05-15

> BS16488.3prime
ATGGTCTAGAAAGCTTTTATACCTTGGGCTCATCAATGTCGCGCACCTCG
TTATCCTGTGGCTGCTTCTCCAGCGGCTCGCGGCGATCATCGTCGTCCTC
CTCGTCGAACTCCTCGAACTTCTTGGGCGGGGCGGAGGTGCTGGGCTCCA
ACGCCGGCTGGAAGTCACCTCCACTGGTGTGCACTCCCTGGGCCACCTCC
TCGCCGCTCTCCAAAGGACGCACATTCACCAAGCGGACCTTAAAGACGCT
GTTGCTATCACCATACACAGTCTCGTTGATCTCAACCTTATGGCCATTGA
CAACCTTAATGGTGGAAGTGGTGTTGGCGTTCTTCGAGTCCAGCGGAATC
AGAGGACGCACTCCAAATGGAAAGCCTGCTCCGCTGCCATCACTAGAATC
ATCAGAGTCGCCAGTCGGAGAAGCGCCCTCCTCACCGGAATCCCTGCCAA
TTACAGGCCACAAACGGGTGCGCAGACGGCGGAAGAGATCATCGAAGGAG
TCGAAGATGCCCACATTGAAGCTCGAAGGATTCGGCTGAAGGAAGGGATA
ACCAGAGCCGGTATCGATGACGCCGCGGAAGTTATGGAAATCCGATTCGG
GCTGAGGGCGTGATGGTACTTTAATCACTTCCGCATCGTCCTGTGGATCG
TTGCGCGCTGGCAATGTGAAAACGCCGCTAAGGGCTAGCACGGTCATCAG
CAAACCGAACAAGAGCTTCATGTCGACTGATAACT

BS16488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31764-PC 705 vir-1-RC 1..705 721..17 3525 100 Minus
CG31764-PA 1296 vir-1-RA 1..699 721..23 3495 100 Minus
CG31764-PB 1296 vir-1-RB 1..699 721..23 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RH 1121 CG31764-RH 232..937 721..16 3530 100 Minus
vir-1-RC 1048 CG31764-RC 159..864 721..16 3530 100 Minus
vir-1-RB 1849 CG31764-RB 243..941 721..23 3495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12407178..12407468 16..306 1455 100 Plus
2L 23513712 2L 12407548..12407735 303..490 940 100 Plus
2L 23513712 2L 12409456..12409626 490..660 855 100 Plus
2L 23513712 2L 12421641..12421704 658..721 320 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:11:40 has no hits.

BS16488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:03 Download gff for BS16488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31764-PC 1..705 17..721 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:54:07 Download gff for BS16488.3prime
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 159..872 7..721 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:57 Download gff for BS16488.3prime
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 159..872 7..721 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:57 Download gff for BS16488.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12421641..12421704 658..721 100   Plus
2L 12407170..12407466 7..304 98 <- Plus
2L 12407550..12407734 305..489 100 <- Plus
2L 12409456..12409623 490..657 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:07 Download gff for BS16488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12407170..12407466 7..304 98 <- Plus
arm_2L 12407550..12407734 305..489 100 <- Plus
arm_2L 12409456..12409623 490..657 100 <- Plus
arm_2L 12421641..12421704 658..721 100   Plus

BS16488.5prime Sequence

735 bp (735 high quality bases) assembled on 2007-05-15

> BS16488.5prime
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGAC
ATTGATGAGCCCAAGGTATAAAAGCTTTCTAGACC

BS16488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31764-PC 705 vir-1-RC 1..705 17..721 3525 100 Plus
CG31764-PA 1296 vir-1-RA 1..699 17..715 3495 100 Plus
CG31764-PB 1296 vir-1-RB 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RH 1121 CG31764-RH 232..937 17..722 3530 100 Plus
vir-1-RC 1048 CG31764-RC 159..864 17..722 3530 100 Plus
vir-1-RB 1849 CG31764-RB 243..941 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12407178..12407468 722..432 1455 100 Minus
2L 23513712 2L 12407548..12407735 435..248 940 100 Minus
2L 23513712 2L 12409456..12409626 248..78 855 100 Minus
2L 23513712 2L 12421641..12421704 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:14:37 has no hits.

BS16488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:34 Download gff for BS16488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31764-PC 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:50:26 Download gff for BS16488.5prime
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 159..872 17..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:56:21 Download gff for BS16488.5prime
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 159..872 17..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:56:21 Download gff for BS16488.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12407170..12407466 434..731 98 <- Minus
2L 12407550..12407734 249..433 100 <- Minus
2L 12409456..12409623 81..248 100 <- Minus
2L 12421641..12421704 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:50:26 Download gff for BS16488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12407550..12407734 249..433 100 <- Minus
arm_2L 12409456..12409623 81..248 100 <- Minus
arm_2L 12421641..12421704 17..80 100   Minus
arm_2L 12407170..12407466 434..731 98 <- Minus

BS16488.complete Sequence

737 bp assembled on 2007-05-07

GenBank Submission: FJ638150

> BS16488.complete
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGAC
ATTGATGAGCCCAAGGTATAAAAGCTTTCTAGACCAT

BS16488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RH 705 CG31764-PH 1..705 17..721 3525 100 Plus
vir-1-RC 705 CG31764-PC 1..705 17..721 3525 100 Plus
vir-1-RB 1296 CG31764-PB 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RH 1121 CG31764-RH 232..937 17..722 3530 100 Plus
vir-1-RC 1048 CG31764-RC 159..864 17..722 3530 100 Plus
vir-1-RB 1849 CG31764-RB 243..941 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12407178..12407468 722..432 1455 100 Minus
2L 23513712 2L 12407548..12407735 435..248 940 100 Minus
2L 23513712 2L 12409456..12409626 248..78 855 100 Minus
2L 23513712 2L 12421641..12421704 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:11:43 has no hits.

BS16488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:12 Download gff for BS16488.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:11 Download gff for BS16488.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 138..840 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:09 Download gff for BS16488.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 159..861 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:12 Download gff for BS16488.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 138..851 17..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:00 Download gff for BS16488.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 159..861 17..719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:00 Download gff for BS16488.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12407550..12407734 249..433 100 <- Minus
2L 12409456..12409623 81..248 100 <- Minus
2L 12421641..12421704 17..80 100   Minus
2L 12407181..12407466 434..719 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:09 Download gff for BS16488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12409456..12409623 81..248 100 <- Minus
arm_2L 12421641..12421704 17..80 100   Minus
arm_2L 12407181..12407466 434..719 100 <- Minus
arm_2L 12407550..12407734 249..433 100 <- Minus

BS16488.pep Sequence

Translation from 16 to 720

> BS16488.pep
MKLLFGLLMTVLALSGVFTLPARNDPQDDAEVIKVPSRPQPESDFHNFRG
VIDTGSGYPFLQPNPSSFNVGIFDSFDDLFRRLRTRLWPVIGRDSGEEGA
SPTGDSDDSSDGSGAGFPFGVRPLIPLDSKNANTTSTIKVVNGHKVEINE
TVYGDSNSVFKVRLVNVRPLESGEEVAQGVHTSGGDFQPALEPSTSAPPK
KFEEFDEEDDDDRREPLEKQPQDNEVRDIDEPKV*

BS16488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-PH 234 CG31764-PH 1..234 1..234 1226 100 Plus
vir-1-PC 234 CG31764-PC 1..234 1..234 1226 100 Plus
vir-1-PB 431 CG31764-PB 1..233 1..233 1222 100 Plus
vir-1-PA 431 CG31764-PA 1..233 1..233 1222 100 Plus
vir-1-PG 423 CG31764-PG 1..225 1..225 1180 100 Plus