Clone Sequence Records
BS16488.3prime Sequence
735 bp (735 high quality bases) assembled on 2007-05-15
> BS16488.3prime
ATGGTCTAGAAAGCTTTTATACCTTGGGCTCATCAATGTCGCGCACCTCG
TTATCCTGTGGCTGCTTCTCCAGCGGCTCGCGGCGATCATCGTCGTCCTC
CTCGTCGAACTCCTCGAACTTCTTGGGCGGGGCGGAGGTGCTGGGCTCCA
ACGCCGGCTGGAAGTCACCTCCACTGGTGTGCACTCCCTGGGCCACCTCC
TCGCCGCTCTCCAAAGGACGCACATTCACCAAGCGGACCTTAAAGACGCT
GTTGCTATCACCATACACAGTCTCGTTGATCTCAACCTTATGGCCATTGA
CAACCTTAATGGTGGAAGTGGTGTTGGCGTTCTTCGAGTCCAGCGGAATC
AGAGGACGCACTCCAAATGGAAAGCCTGCTCCGCTGCCATCACTAGAATC
ATCAGAGTCGCCAGTCGGAGAAGCGCCCTCCTCACCGGAATCCCTGCCAA
TTACAGGCCACAAACGGGTGCGCAGACGGCGGAAGAGATCATCGAAGGAG
TCGAAGATGCCCACATTGAAGCTCGAAGGATTCGGCTGAAGGAAGGGATA
ACCAGAGCCGGTATCGATGACGCCGCGGAAGTTATGGAAATCCGATTCGG
GCTGAGGGCGTGATGGTACTTTAATCACTTCCGCATCGTCCTGTGGATCG
TTGCGCGCTGGCAATGTGAAAACGCCGCTAAGGGCTAGCACGGTCATCAG
CAAACCGAACAAGAGCTTCATGTCGACTGATAACT
BS16488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31764-PC | 705 | vir-1-RC | 1..705 | 721..17 | 3525 | 100 | Minus |
CG31764-PA | 1296 | vir-1-RA | 1..699 | 721..23 | 3495 | 100 | Minus |
CG31764-PB | 1296 | vir-1-RB | 1..699 | 721..23 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-RH | 1121 | CG31764-RH | 232..937 | 721..16 | 3530 | 100 | Minus |
vir-1-RC | 1048 | CG31764-RC | 159..864 | 721..16 | 3530 | 100 | Minus |
vir-1-RB | 1849 | CG31764-RB | 243..941 | 721..23 | 3495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12407178..12407468 | 16..306 | 1455 | 100 | Plus |
2L | 23513712 | 2L | 12407548..12407735 | 303..490 | 940 | 100 | Plus |
2L | 23513712 | 2L | 12409456..12409626 | 490..660 | 855 | 100 | Plus |
2L | 23513712 | 2L | 12421641..12421704 | 658..721 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:11:40 has no hits.
BS16488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:03 Download gff for
BS16488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31764-PC | 1..705 | 17..721 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:54:07 Download gff for
BS16488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 159..872 | 7..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:57 Download gff for
BS16488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 159..872 | 7..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:57 Download gff for
BS16488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12421641..12421704 | 658..721 | 100 | | Plus |
2L | 12407170..12407466 | 7..304 | 98 | <- | Plus |
2L | 12407550..12407734 | 305..489 | 100 | <- | Plus |
2L | 12409456..12409623 | 490..657 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:07 Download gff for
BS16488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12407170..12407466 | 7..304 | 98 | <- | Plus |
arm_2L | 12407550..12407734 | 305..489 | 100 | <- | Plus |
arm_2L | 12409456..12409623 | 490..657 | 100 | <- | Plus |
arm_2L | 12421641..12421704 | 658..721 | 100 | | Plus |
BS16488.5prime Sequence
735 bp (735 high quality bases) assembled on 2007-05-15
> BS16488.5prime
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGAC
ATTGATGAGCCCAAGGTATAAAAGCTTTCTAGACC
BS16488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31764-PC | 705 | vir-1-RC | 1..705 | 17..721 | 3525 | 100 | Plus |
CG31764-PA | 1296 | vir-1-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
CG31764-PB | 1296 | vir-1-RB | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-RH | 1121 | CG31764-RH | 232..937 | 17..722 | 3530 | 100 | Plus |
vir-1-RC | 1048 | CG31764-RC | 159..864 | 17..722 | 3530 | 100 | Plus |
vir-1-RB | 1849 | CG31764-RB | 243..941 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12407178..12407468 | 722..432 | 1455 | 100 | Minus |
2L | 23513712 | 2L | 12407548..12407735 | 435..248 | 940 | 100 | Minus |
2L | 23513712 | 2L | 12409456..12409626 | 248..78 | 855 | 100 | Minus |
2L | 23513712 | 2L | 12421641..12421704 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:14:37 has no hits.
BS16488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:34 Download gff for
BS16488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31764-PC | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:50:26 Download gff for
BS16488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 159..872 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:56:21 Download gff for
BS16488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 159..872 | 17..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:56:21 Download gff for
BS16488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12407170..12407466 | 434..731 | 98 | <- | Minus |
2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
2L | 12421641..12421704 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:50:26 Download gff for
BS16488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
arm_2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
arm_2L | 12421641..12421704 | 17..80 | 100 | | Minus |
arm_2L | 12407170..12407466 | 434..731 | 98 | <- | Minus |
BS16488.complete Sequence
737 bp assembled on 2007-05-07
GenBank Submission: FJ638150
> BS16488.complete
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGAC
ATTGATGAGCCCAAGGTATAAAAGCTTTCTAGACCAT
BS16488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-RH | 705 | CG31764-PH | 1..705 | 17..721 | 3525 | 100 | Plus |
vir-1-RC | 705 | CG31764-PC | 1..705 | 17..721 | 3525 | 100 | Plus |
vir-1-RB | 1296 | CG31764-PB | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-RH | 1121 | CG31764-RH | 232..937 | 17..722 | 3530 | 100 | Plus |
vir-1-RC | 1048 | CG31764-RC | 159..864 | 17..722 | 3530 | 100 | Plus |
vir-1-RB | 1849 | CG31764-RB | 243..941 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12407178..12407468 | 722..432 | 1455 | 100 | Minus |
2L | 23513712 | 2L | 12407548..12407735 | 435..248 | 940 | 100 | Minus |
2L | 23513712 | 2L | 12409456..12409626 | 248..78 | 855 | 100 | Minus |
2L | 23513712 | 2L | 12421641..12421704 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:11:43 has no hits.
BS16488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:12 Download gff for
BS16488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:11 Download gff for
BS16488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 138..840 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:09 Download gff for
BS16488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 159..861 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:12 Download gff for
BS16488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 138..851 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:00 Download gff for
BS16488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 159..861 | 17..719 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:00 Download gff for
BS16488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
2L | 12421641..12421704 | 17..80 | 100 | | Minus |
2L | 12407181..12407466 | 434..719 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:09 Download gff for
BS16488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
arm_2L | 12421641..12421704 | 17..80 | 100 | | Minus |
arm_2L | 12407181..12407466 | 434..719 | 100 | <- | Minus |
arm_2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
BS16488.pep Sequence
Translation from 16 to 720
> BS16488.pep
MKLLFGLLMTVLALSGVFTLPARNDPQDDAEVIKVPSRPQPESDFHNFRG
VIDTGSGYPFLQPNPSSFNVGIFDSFDDLFRRLRTRLWPVIGRDSGEEGA
SPTGDSDDSSDGSGAGFPFGVRPLIPLDSKNANTTSTIKVVNGHKVEINE
TVYGDSNSVFKVRLVNVRPLESGEEVAQGVHTSGGDFQPALEPSTSAPPK
KFEEFDEEDDDDRREPLEKQPQDNEVRDIDEPKV*
BS16488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-PH | 234 | CG31764-PH | 1..234 | 1..234 | 1226 | 100 | Plus |
vir-1-PC | 234 | CG31764-PC | 1..234 | 1..234 | 1226 | 100 | Plus |
vir-1-PB | 431 | CG31764-PB | 1..233 | 1..233 | 1222 | 100 | Plus |
vir-1-PA | 431 | CG31764-PA | 1..233 | 1..233 | 1222 | 100 | Plus |
vir-1-PG | 423 | CG31764-PG | 1..225 | 1..225 | 1180 | 100 | Plus |