Clone BS16489 Report

Search the DGRC for BS16489

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptPpt2-RA
Protein status:BS16489.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16489.3prime Sequence

851 bp (757 high quality bases) assembled on 2007-05-15

> BS16489.3prime
ATGGTCTAGAAAGCTTTCAGTCCAGATATGGAAATATCACTTCGTGGATG
ACATCCCTTCGCGTGTGCCAGGCAAGATGATGAACATGGGGTTTGACCAC
AATGATAAGCTTGCCGGCCTCCTGAAGCGTCCTGATGCCAATGGAGTCGC
TGGTGAAAATCGGTCGCCTAATAAATGGAATCACATCCATATTCTCGTCA
AAGTAACCAAAGTGGCTCGATTGCCACGGAGTAATCACATCGTCGTTGGG
TCCGCCGATCATTACCAACTTATTTAGACGCACCATTCCCATCTTAAAAG
ATGTGGAGTTGGAGGTCTTCTTCTCATTATTGATCAGTGGCAGGAATTCG
CTGTACTTCAGGTAGAGATCCTGCCTCTGCGGATCGTTCCAGTAGCCACC
AACCGAGGTGTGCTGTCCCACGCGCGAGTAGAACAATTCGAAGGCTGTCT
TGGCCGCCAAGTCGGGAAAGATTAGATGCAAGAAGCTAGTGCCGTATTGC
CCCGCCTGTGGCGAGGATAGAGATATAAAGGTCTTCACATTGTGCTCGGG
CAGACTTTGGATGGCCGCCCGGGCCAAAAGGCCTCCTTGTGAGTATCCCA
GCACAATGATGCCCTCTGGATGCAGTTTGCCCACCTCGTTGAGATAATCC
CTAACCTGATCGACCTGTCGCCAGGCGTTCTCCAAGCTGTACCATCCATT
GAACTTGTCGCAGTTGTAGACGATAGTGCCAGGATGAAACTCTTCGATTT
CCCGGACCAGAGAGGCCATCGATTCGGCTCCTGATAGAATTCCATGGAGT
ATGACCACCGGTTTGTAGGCCAGTGAGACGGAAATGGACAAGCAGGTTAA
C

BS16489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4851-PA 867 CG4851-RA 33..867 851..17 4150 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 1191 CG4851-RA 107..942 851..16 4165 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11281133..11281406 489..216 1370 100 Minus
2L 23513712 2L 11281470..11281671 217..16 1010 100 Minus
2L 23513712 2L 11280615..11280759 741..597 725 100 Minus
2L 23513712 2L 11280404..11280515 851..740 545 99.1 Minus
2L 23513712 2L 11280820..11280928 598..490 545 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:57:17 has no hits.

BS16489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:13 Download gff for BS16489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4851-PA 33..867 17..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:00 Download gff for BS16489.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 107..942 16..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:31 Download gff for BS16489.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 107..942 16..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:31 Download gff for BS16489.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11280404..11280515 740..851 99 -> Minus
2L 11280617..11280758 598..739 100 -> Minus
2L 11280821..11280928 490..597 100 -> Minus
2L 11281133..11281406 216..489 100 -> Minus
2L 11281472..11281671 16..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:00 Download gff for BS16489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11280404..11280515 740..851 99 -> Minus
arm_2L 11280617..11280758 598..739 100 -> Minus
arm_2L 11280821..11280928 490..597 100 -> Minus
arm_2L 11281133..11281406 216..489 100 -> Minus
arm_2L 11281472..11281671 16..215 100   Minus

BS16489.5prime Sequence

880 bp (775 high quality bases) assembled on 2007-05-15

> BS16489.5prime
GAAGTTATCAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGT
TAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATA
CTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGA
AATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCA
ATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGG
GATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCT
GGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGC
CCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGG
CAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAA
GACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTG
GTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGC
GAATTCCTGCCACTGATCAATAATGAGAAGAAGACCTCCAACTCCACATC
TTTTAAGATGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCGGCGGAC
CCAACGACGATGTGATTACTCCGTGGCAATCGAGCCACTTTGGTTACTTT
GACGAGAATATGGATGTGATTCCATTTATTAGGCGACCGATTTTCACCAG
CGACTCCATTGGCATCAGGACGCTTCANGAGGCCGGCAAGCTTATCATTG
TGGTCAAACCCCATGTTCATCATCTTGCCTGGCACACGCGAAGGGATGTC
ATCCACGAAGTGATATTTCAATATCTGGGA

BS16489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4851-PA 867 CG4851-RA 1..862 17..878 4266 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 1191 CG4851-RA 75..936 17..878 4284 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11281133..11281406 411..684 1370 100 Plus
2L 23513712 2L 11281470..11281665 683..878 954 99 Plus
2L 23513712 2L 11280615..11280759 159..303 725 100 Plus
2L 23513712 2L 11280372..11280515 17..160 720 100 Plus
2L 23513712 2L 11280820..11280928 302..410 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:31:31 has no hits.

BS16489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:38 Download gff for BS16489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4851-PA 1..862 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:17 Download gff for BS16489.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 69..936 9..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:35 Download gff for BS16489.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 69..936 9..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:35 Download gff for BS16489.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11281133..11281406 411..684 100 -> Plus
2L 11281472..11281665 685..879 98   Plus
2L 11280366..11280515 9..160 97 -> Plus
2L 11280617..11280758 161..302 100 -> Plus
2L 11280821..11280928 303..410 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:17 Download gff for BS16489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11280366..11280515 9..160 97 -> Plus
arm_2L 11280617..11280758 161..302 100 -> Plus
arm_2L 11280821..11280928 303..410 100 -> Plus
arm_2L 11281133..11281406 411..684 100 -> Plus
arm_2L 11281472..11281665 685..879 98   Plus

BS16489.complete Sequence

899 bp assembled on 2007-05-07

GenBank Submission: FJ638151

> BS16489.complete
GAAGTTATCAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGT
TAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATA
CTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGA
AATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCA
ATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGG
GATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCT
GGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGC
CCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGG
CAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAA
GACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTG
GTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGC
GAATTCCTGCCACTGATCAATAATGAGAAGAAGACCTCCAACTCCACATC
TTTTAAGATGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCGGCGGAC
CCAACGACGATGTGATTACTCCGTGGCAATCGAGCCACTTTGGTTACTTT
GACGAGAATATGGATGTGATTCCATTTATTAGGCGACCGATTTTCACCAG
CGACTCCATTGGCATCAGGACGCTTCAGGAGGCCGGCAAGCTTATCATTG
TGGTCAAACCCCATGTTCATCATCTTGCCTGGCACACGCGAAGGGATGTC
ATCCACGAAGTGATATTTCCATATCTGGACTGAAAGCTTTCTAGACCAT

BS16489.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 867 CG4851-PA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 1191 CG4851-RA 75..942 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11281133..11281406 411..684 1370 100 Plus
2L 23513712 2L 11281470..11281671 683..884 1010 100 Plus
2L 23513712 2L 11280615..11280759 159..303 725 100 Plus
2L 23513712 2L 11280372..11280515 17..160 720 100 Plus
2L 23513712 2L 11280820..11280928 302..410 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:14:53 has no hits.

BS16489.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:53 Download gff for BS16489.complete
Subject Subject Range Query Range Percent Splice Strand
CG4851-RA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:05 Download gff for BS16489.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 53..926 9..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:58 Download gff for BS16489.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 75..940 17..882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:53 Download gff for BS16489.complete
Subject Subject Range Query Range Percent Splice Strand
CG4851-RA 53..926 9..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:57 Download gff for BS16489.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 75..940 17..882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:57 Download gff for BS16489.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11280617..11280758 161..302 100 -> Plus
2L 11280821..11280928 303..410 100 -> Plus
2L 11281133..11281406 411..684 100 -> Plus
2L 11281472..11281669 685..882 100   Plus
2L 11280372..11280515 17..160 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:58 Download gff for BS16489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11280372..11280515 17..160 100 -> Plus
arm_2L 11280617..11280758 161..302 100 -> Plus
arm_2L 11280821..11280928 303..410 100 -> Plus
arm_2L 11281133..11281406 411..684 100 -> Plus
arm_2L 11281472..11281669 685..882 100   Plus

BS16489.pep Sequence

Translation from 16 to 882

> BS16489.pep
MRLRLQVLVALLTCSSISVSLAYKPVVILHGILSGAESMASLVREIEEFH
PGTIVYNCDKFNGWYSLENAWRQVDQVRDYLNEVGKLHPEGIIVLGYSQG
GLLARAAIQSLPEHNVKTFISLSSPQAGQYGTSFLHLIFPDLAAKTAFEL
FYSRVGQHTSVGGYWNDPQRQDLYLKYSEFLPLINNEKKTSNSTSFKMGM
VRLNKLVMIGGPNDDVITPWQSSHFGYFDENMDVIPFIRRPIFTSDSIGI
RTLQEAGKLIIVVKPHVHHLAWHTRRDVIHEVIFPYLD*

BS16489.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-PA 288 CG4851-PA 1..288 1..288 1511 100 Plus