Clone Sequence Records
BS16489.3prime Sequence
851 bp (757 high quality bases) assembled on 2007-05-15
> BS16489.3prime
ATGGTCTAGAAAGCTTTCAGTCCAGATATGGAAATATCACTTCGTGGATG
ACATCCCTTCGCGTGTGCCAGGCAAGATGATGAACATGGGGTTTGACCAC
AATGATAAGCTTGCCGGCCTCCTGAAGCGTCCTGATGCCAATGGAGTCGC
TGGTGAAAATCGGTCGCCTAATAAATGGAATCACATCCATATTCTCGTCA
AAGTAACCAAAGTGGCTCGATTGCCACGGAGTAATCACATCGTCGTTGGG
TCCGCCGATCATTACCAACTTATTTAGACGCACCATTCCCATCTTAAAAG
ATGTGGAGTTGGAGGTCTTCTTCTCATTATTGATCAGTGGCAGGAATTCG
CTGTACTTCAGGTAGAGATCCTGCCTCTGCGGATCGTTCCAGTAGCCACC
AACCGAGGTGTGCTGTCCCACGCGCGAGTAGAACAATTCGAAGGCTGTCT
TGGCCGCCAAGTCGGGAAAGATTAGATGCAAGAAGCTAGTGCCGTATTGC
CCCGCCTGTGGCGAGGATAGAGATATAAAGGTCTTCACATTGTGCTCGGG
CAGACTTTGGATGGCCGCCCGGGCCAAAAGGCCTCCTTGTGAGTATCCCA
GCACAATGATGCCCTCTGGATGCAGTTTGCCCACCTCGTTGAGATAATCC
CTAACCTGATCGACCTGTCGCCAGGCGTTCTCCAAGCTGTACCATCCATT
GAACTTGTCGCAGTTGTAGACGATAGTGCCAGGATGAAACTCTTCGATTT
CCCGGACCAGAGAGGCCATCGATTCGGCTCCTGATAGAATTCCATGGAGT
ATGACCACCGGTTTGTAGGCCAGTGAGACGGAAATGGACAAGCAGGTTAA
C
BS16489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4851-PA | 867 | CG4851-RA | 33..867 | 851..17 | 4150 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-RA | 1191 | CG4851-RA | 107..942 | 851..16 | 4165 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11281133..11281406 | 489..216 | 1370 | 100 | Minus |
2L | 23513712 | 2L | 11281470..11281671 | 217..16 | 1010 | 100 | Minus |
2L | 23513712 | 2L | 11280615..11280759 | 741..597 | 725 | 100 | Minus |
2L | 23513712 | 2L | 11280404..11280515 | 851..740 | 545 | 99.1 | Minus |
2L | 23513712 | 2L | 11280820..11280928 | 598..490 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:57:17 has no hits.
BS16489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:13 Download gff for
BS16489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4851-PA | 33..867 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:00 Download gff for
BS16489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 107..942 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:31 Download gff for
BS16489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 107..942 | 16..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:31 Download gff for
BS16489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11280404..11280515 | 740..851 | 99 | -> | Minus |
2L | 11280617..11280758 | 598..739 | 100 | -> | Minus |
2L | 11280821..11280928 | 490..597 | 100 | -> | Minus |
2L | 11281133..11281406 | 216..489 | 100 | -> | Minus |
2L | 11281472..11281671 | 16..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:00 Download gff for
BS16489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11280404..11280515 | 740..851 | 99 | -> | Minus |
arm_2L | 11280617..11280758 | 598..739 | 100 | -> | Minus |
arm_2L | 11280821..11280928 | 490..597 | 100 | -> | Minus |
arm_2L | 11281133..11281406 | 216..489 | 100 | -> | Minus |
arm_2L | 11281472..11281671 | 16..215 | 100 | | Minus |
BS16489.5prime Sequence
880 bp (775 high quality bases) assembled on 2007-05-15
> BS16489.5prime
GAAGTTATCAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGT
TAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATA
CTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGA
AATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCA
ATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGG
GATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCT
GGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGC
CCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGG
CAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAA
GACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTG
GTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGC
GAATTCCTGCCACTGATCAATAATGAGAAGAAGACCTCCAACTCCACATC
TTTTAAGATGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCGGCGGAC
CCAACGACGATGTGATTACTCCGTGGCAATCGAGCCACTTTGGTTACTTT
GACGAGAATATGGATGTGATTCCATTTATTAGGCGACCGATTTTCACCAG
CGACTCCATTGGCATCAGGACGCTTCANGAGGCCGGCAAGCTTATCATTG
TGGTCAAACCCCATGTTCATCATCTTGCCTGGCACACGCGAAGGGATGTC
ATCCACGAAGTGATATTTCAATATCTGGGA
BS16489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4851-PA | 867 | CG4851-RA | 1..862 | 17..878 | 4266 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-RA | 1191 | CG4851-RA | 75..936 | 17..878 | 4284 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11281133..11281406 | 411..684 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 11281470..11281665 | 683..878 | 954 | 99 | Plus |
2L | 23513712 | 2L | 11280615..11280759 | 159..303 | 725 | 100 | Plus |
2L | 23513712 | 2L | 11280372..11280515 | 17..160 | 720 | 100 | Plus |
2L | 23513712 | 2L | 11280820..11280928 | 302..410 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:31:31 has no hits.
BS16489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:38 Download gff for
BS16489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4851-PA | 1..862 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:17 Download gff for
BS16489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 69..936 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:35 Download gff for
BS16489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 69..936 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:35 Download gff for
BS16489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11281133..11281406 | 411..684 | 100 | -> | Plus |
2L | 11281472..11281665 | 685..879 | 98 | | Plus |
2L | 11280366..11280515 | 9..160 | 97 | -> | Plus |
2L | 11280617..11280758 | 161..302 | 100 | -> | Plus |
2L | 11280821..11280928 | 303..410 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:17 Download gff for
BS16489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11280366..11280515 | 9..160 | 97 | -> | Plus |
arm_2L | 11280617..11280758 | 161..302 | 100 | -> | Plus |
arm_2L | 11280821..11280928 | 303..410 | 100 | -> | Plus |
arm_2L | 11281133..11281406 | 411..684 | 100 | -> | Plus |
arm_2L | 11281472..11281665 | 685..879 | 98 | | Plus |
BS16489.complete Sequence
899 bp assembled on 2007-05-07
GenBank Submission: FJ638151
> BS16489.complete
GAAGTTATCAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGT
TAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATA
CTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGA
AATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCA
ATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGG
GATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCT
GGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGC
CCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGG
CAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAA
GACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTG
GTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGC
GAATTCCTGCCACTGATCAATAATGAGAAGAAGACCTCCAACTCCACATC
TTTTAAGATGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCGGCGGAC
CCAACGACGATGTGATTACTCCGTGGCAATCGAGCCACTTTGGTTACTTT
GACGAGAATATGGATGTGATTCCATTTATTAGGCGACCGATTTTCACCAG
CGACTCCATTGGCATCAGGACGCTTCAGGAGGCCGGCAAGCTTATCATTG
TGGTCAAACCCCATGTTCATCATCTTGCCTGGCACACGCGAAGGGATGTC
ATCCACGAAGTGATATTTCCATATCTGGACTGAAAGCTTTCTAGACCAT
BS16489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-RA | 867 | CG4851-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-RA | 1191 | CG4851-RA | 75..942 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11281133..11281406 | 411..684 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 11281470..11281671 | 683..884 | 1010 | 100 | Plus |
2L | 23513712 | 2L | 11280615..11280759 | 159..303 | 725 | 100 | Plus |
2L | 23513712 | 2L | 11280372..11280515 | 17..160 | 720 | 100 | Plus |
2L | 23513712 | 2L | 11280820..11280928 | 302..410 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:14:53 has no hits.
BS16489.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:53 Download gff for
BS16489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4851-RA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:05 Download gff for
BS16489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 53..926 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:58 Download gff for
BS16489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 75..940 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:53 Download gff for
BS16489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4851-RA | 53..926 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:57 Download gff for
BS16489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 75..940 | 17..882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:57 Download gff for
BS16489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11280617..11280758 | 161..302 | 100 | -> | Plus |
2L | 11280821..11280928 | 303..410 | 100 | -> | Plus |
2L | 11281133..11281406 | 411..684 | 100 | -> | Plus |
2L | 11281472..11281669 | 685..882 | 100 | | Plus |
2L | 11280372..11280515 | 17..160 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:58 Download gff for
BS16489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11280372..11280515 | 17..160 | 100 | -> | Plus |
arm_2L | 11280617..11280758 | 161..302 | 100 | -> | Plus |
arm_2L | 11280821..11280928 | 303..410 | 100 | -> | Plus |
arm_2L | 11281133..11281406 | 411..684 | 100 | -> | Plus |
arm_2L | 11281472..11281669 | 685..882 | 100 | | Plus |
BS16489.pep Sequence
Translation from 16 to 882
> BS16489.pep
MRLRLQVLVALLTCSSISVSLAYKPVVILHGILSGAESMASLVREIEEFH
PGTIVYNCDKFNGWYSLENAWRQVDQVRDYLNEVGKLHPEGIIVLGYSQG
GLLARAAIQSLPEHNVKTFISLSSPQAGQYGTSFLHLIFPDLAAKTAFEL
FYSRVGQHTSVGGYWNDPQRQDLYLKYSEFLPLINNEKKTSNSTSFKMGM
VRLNKLVMIGGPNDDVITPWQSSHFGYFDENMDVIPFIRRPIFTSDSIGI
RTLQEAGKLIIVVKPHVHHLAWHTRRDVIHEVIFPYLD*
BS16489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-PA | 288 | CG4851-PA | 1..288 | 1..288 | 1511 | 100 | Plus |