Clone BS16490 Report

Search the DGRC for BS16490

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:164
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG31683-RA
Protein status:BS16490.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16490.3prime Sequence

853 bp (743 high quality bases) assembled on 2007-05-15

> BS16490.3prime
ATGGTCTAGAAAGCTTTTACGGCTGCTGCATGACAGTGCGGATATATTTG
AGGACGTCCGGATTGGACAGGATGTGCAAGTGGTCCACGTTCTGGAGAGC
GAGCGTGTTTATAGGCGCTTTAGAATAGCCCGCCCAATATTTGCAGGCTC
GCAGAGAACGCTGGTTAACGGTGCCGTCGCCGAGACCCATTATCAACTTG
GGCGTTTCCCCACTAATGTCCGATTTCTTGTACTGCAGTCTCTCGACCGT
GTCGATGCCTTCGCCATAGAGACAGTGCAGTTCCACATTCGGTGGATCGA
AGTTTCGGTTGTACCGAATCGTGTCCTTGCGCATTTCCCAGCCCGTCATG
TAGTCGAGGTCTTTGAAGAACTCTTCCAGCTGTGCCATCGTATAGTTTCT
GCTTGGAGTCATGGCGAGCACCTCGGTTGGCTTCCAAAACAGTGGCGAGG
GCAGCAACCAGGCCGTGGATGGGTGTGTTATCTGTTCCGCCTTGAGGATC
TTGGCACTCAGGGCGAACGAGTCGAGATCATCGCCCATGGCAAACACTTT
CACAGCCTTAAAACTTCCCGCCCAAACTCCCGCCAGGCTGATCATGCGCT
TCACGTATTTCGCCTTCCATTGGAGGGTTTGCTCCTGCAAGAAAACCAGG
GTCATGAGACTGCCCATGCTGTGCGAGATGAAGGTCACAGCCGACTGATT
GTTGGCCTCATAGGAGTCCTCCACCAGCTGCTTGAGATCGATGAAGAACT
GTTGGTTCTCATTTGGCGCTTTGCGGAAGTCATAGGGTGCTCCATGAATA
TTTTGTTTGCGAATATATCCAAGTTTCACCAGCTCATTGGCTATATCCTT
GAA

BS16490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-PA 1266 CG31683-RA 430..1266 853..17 4185 100 Minus
CG18858-PA 1266 CG18858-RA 430..1266 853..17 4160 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-RB 1823 CG31683-RB 866..1702 853..17 4185 100 Minus
CG31683-RA 2031 CG31683-RA 866..1702 853..17 4185 100 Minus
CG18858-RB 2029 CG18858-RB 860..1696 853..17 4170 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20448351..20448873 240..762 2615 100 Plus
2L 23513712 2L 20457468..20457994 240..766 2605 99.6 Plus
2L 23513712 2L 20448063..20448287 17..241 1125 100 Plus
2L 23513712 2L 20457180..20457404 17..241 1125 100 Plus
2L 23513712 2L 20448937..20449032 758..853 465 99 Plus
2L 23513712 2L 20458054..20458149 758..853 465 99 Plus
Blast to na_te.dros performed on 2015-02-13 12:04:11 has no hits.

BS16490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:18 Download gff for BS16490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-PA 432..1266 17..851 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:44 Download gff for BS16490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 866..1702 17..853 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:06 Download gff for BS16490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 866..1702 17..853 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:06 Download gff for BS16490.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20448063..20448285 17..239 100 <- Plus
2L 20448351..20448873 240..762 100 <- Plus
2L 20448942..20449032 763..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:44 Download gff for BS16490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20448063..20448285 17..239 100 <- Plus
arm_2L 20448351..20448873 240..762 100 <- Plus
arm_2L 20448942..20449032 763..853 100   Plus

BS16490.5prime Sequence

761 bp (759 high quality bases) assembled on 2007-05-15

> BS16490.5prime
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAA
AGTGTTTGCCA

BS16490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-PA 1266 CG31683-RA 1..745 17..761 3725 100 Plus
CG18858-PA 1266 CG18858-RA 1..745 17..761 3700 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-RB 1823 CG31683-RB 437..1181 17..761 3725 100 Plus
CG31683-RA 2031 CG31683-RA 437..1181 17..761 3725 100 Plus
CG18858-RB 2029 CG18858-RB 431..1175 17..761 3710 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20448937..20449314 541..164 1875 99.7 Minus
2L 23513712 2L 20458054..20458431 541..164 1860 99.5 Minus
2L 23513712 2L 20457766..20457994 761..533 1130 99.6 Minus
2L 23513712 2L 20448649..20448873 761..537 1125 100 Minus
2L 23513712 2L 20449381..20449528 164..17 740 100 Minus
2L 23513712 2L 20458498..20458645 164..17 740 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:47:58 has no hits.

BS16490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:43 Download gff for BS16490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-PA 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:55 Download gff for BS16490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 437..1180 17..760 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:43:51 Download gff for BS16490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 437..1180 17..760 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:43:51 Download gff for BS16490.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20448650..20448873 537..760 100 <- Minus
2L 20448942..20449313 165..536 100 <- Minus
2L 20449381..20449528 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:55 Download gff for BS16490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20448650..20448873 537..760 100 <- Minus
arm_2L 20448942..20449313 165..536 100 <- Minus
arm_2L 20449381..20449528 17..164 100   Minus

BS16490.complete Sequence

1298 bp assembled on 2007-05-07

GenBank Submission: FJ638152

> BS16490.complete
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAA
AGTGTTTGCCATGGGCGATGATCTCGACTCGTTCGCCCTGAGTGCCAAGA
TCCTCAAGGCGGAACAGATAACACACCCATCCACGGCCTGGTTGCTGCCC
TCGCCACTGTTTTGGAAGCCAACCGAGGTGCTCGCCATGACTCCAAGCAG
AAACTATACGATGGCACAGCTGGAAGAGTTCTTCAAAGACCTCGACTACA
TGACGGGCTGGGAAATGCGCAAGGACACGATTCGGTACAACCGAAACTTC
GATCCACCGAATGTGGAACTGCACTGTCTCTATGGCGAAGGCATCGACAC
GGTCGAGAGACTGCAGTACAAGAAATCGGACATTAGTGGGGAAACGCCCA
AGTTGATAATGGGTCTCGGCGACGGCACCGTTAACCAGCGTTCTCTGCGA
GCCTGCAAATATTGGGCGGGCTATTCTAAAGCGCCTATAAACACGCTCGC
TCTCCAGAACGTGGACCACTTGCACATCCTGTCCAATCCGGACGTCCTCA
AATATATCCGCACTGTCATGCAGCAGCCGTAAAAGCTTTCTAGACCAT

BS16490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-RB 1266 CG31683-PB 1..1266 17..1282 6330 100 Plus
CG31683-RA 1266 CG31683-PA 1..1266 17..1282 6330 100 Plus
CG18858-RB 1266 CG18858-PB 1..1266 17..1282 6300 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-RB 1823 CG31683-RB 437..1702 17..1282 6330 100 Plus
CG31683-RA 2031 CG31683-RA 437..1702 17..1282 6330 100 Plus
CG18858-RB 2029 CG18858-RB 431..1696 17..1282 6300 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20448351..20448873 1059..537 2615 100 Minus
2L 23513712 2L 20457468..20457994 1059..533 2605 99.6 Minus
2L 23513712 2L 20448937..20449314 541..164 1875 99.7 Minus
2L 23513712 2L 20458054..20458431 541..164 1860 99.5 Minus
2L 23513712 2L 20448063..20448287 1282..1058 1125 100 Minus
2L 23513712 2L 20457180..20457404 1282..1058 1125 100 Minus
2L 23513712 2L 20449381..20449528 164..17 740 100 Minus
2L 23513712 2L 20458498..20458645 164..17 740 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:08:30 has no hits.

BS16490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:55 Download gff for BS16490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 1..1266 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:06 Download gff for BS16490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 446..1711 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:51 Download gff for BS16490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 437..1700 17..1280 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:55 Download gff for BS16490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 446..1711 17..1282 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:39 Download gff for BS16490.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 437..1700 17..1280 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:39 Download gff for BS16490.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20448065..20448285 1060..1280 100 <- Minus
2L 20448351..20448873 537..1059 100 <- Minus
2L 20448942..20449313 165..536 100 <- Minus
2L 20449381..20449528 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:51 Download gff for BS16490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20448065..20448285 1060..1280 100 <- Minus
arm_2L 20448351..20448873 537..1059 100 <- Minus
arm_2L 20448942..20449313 165..536 100 <- Minus
arm_2L 20449381..20449528 17..164 100   Minus

BS16490.pep Sequence

Translation from 16 to 1281

> BS16490.pep
MRLKSGVLSLLLLTTFLALGECFWPFSKWHGRNDNPSAPPEPKLSPVIFV
PGDGGSQMDARLNKPNSPYLICQKTHDWYNLWLDLEQLVIPIVYCWIDNV
KLYYDKVTRTTHNTPGVETRIPGWGNPEVVEWIDPTKNSAGAYFKDIANE
LVKLGYIRKQNIHGAPYDFRKAPNENQQFFIDLKQLVEDSYEANNQSAVT
FISHSMGSLMTLVFLQEQTLQWKAKYVKRMISLAGVWAGSFKAVKVFAMG
DDLDSFALSAKILKAEQITHPSTAWLLPSPLFWKPTEVLAMTPSRNYTMA
QLEEFFKDLDYMTGWEMRKDTIRYNRNFDPPNVELHCLYGEGIDTVERLQ
YKKSDISGETPKLIMGLGDGTVNQRSLRACKYWAGYSKAPINTLALQNVD
HLHILSNPDVLKYIRTVMQQP*

BS16490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-PB 421 CG31683-PB 1..421 1..421 2266 100 Plus
CG31683-PA 421 CG31683-PA 1..421 1..421 2266 100 Plus
CG18858-PB 421 CG18858-PB 1..421 1..421 2259 99.5 Plus
CG18858-PA 421 CG18858-PA 1..421 1..421 2259 99.5 Plus