Clone Sequence Records
BS16490.3prime Sequence
853 bp (743 high quality bases) assembled on 2007-05-15
> BS16490.3prime
ATGGTCTAGAAAGCTTTTACGGCTGCTGCATGACAGTGCGGATATATTTG
AGGACGTCCGGATTGGACAGGATGTGCAAGTGGTCCACGTTCTGGAGAGC
GAGCGTGTTTATAGGCGCTTTAGAATAGCCCGCCCAATATTTGCAGGCTC
GCAGAGAACGCTGGTTAACGGTGCCGTCGCCGAGACCCATTATCAACTTG
GGCGTTTCCCCACTAATGTCCGATTTCTTGTACTGCAGTCTCTCGACCGT
GTCGATGCCTTCGCCATAGAGACAGTGCAGTTCCACATTCGGTGGATCGA
AGTTTCGGTTGTACCGAATCGTGTCCTTGCGCATTTCCCAGCCCGTCATG
TAGTCGAGGTCTTTGAAGAACTCTTCCAGCTGTGCCATCGTATAGTTTCT
GCTTGGAGTCATGGCGAGCACCTCGGTTGGCTTCCAAAACAGTGGCGAGG
GCAGCAACCAGGCCGTGGATGGGTGTGTTATCTGTTCCGCCTTGAGGATC
TTGGCACTCAGGGCGAACGAGTCGAGATCATCGCCCATGGCAAACACTTT
CACAGCCTTAAAACTTCCCGCCCAAACTCCCGCCAGGCTGATCATGCGCT
TCACGTATTTCGCCTTCCATTGGAGGGTTTGCTCCTGCAAGAAAACCAGG
GTCATGAGACTGCCCATGCTGTGCGAGATGAAGGTCACAGCCGACTGATT
GTTGGCCTCATAGGAGTCCTCCACCAGCTGCTTGAGATCGATGAAGAACT
GTTGGTTCTCATTTGGCGCTTTGCGGAAGTCATAGGGTGCTCCATGAATA
TTTTGTTTGCGAATATATCCAAGTTTCACCAGCTCATTGGCTATATCCTT
GAA
BS16490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-PA | 1266 | CG31683-RA | 430..1266 | 853..17 | 4185 | 100 | Minus |
CG18858-PA | 1266 | CG18858-RA | 430..1266 | 853..17 | 4160 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-RB | 1823 | CG31683-RB | 866..1702 | 853..17 | 4185 | 100 | Minus |
CG31683-RA | 2031 | CG31683-RA | 866..1702 | 853..17 | 4185 | 100 | Minus |
CG18858-RB | 2029 | CG18858-RB | 860..1696 | 853..17 | 4170 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20448351..20448873 | 240..762 | 2615 | 100 | Plus |
2L | 23513712 | 2L | 20457468..20457994 | 240..766 | 2605 | 99.6 | Plus |
2L | 23513712 | 2L | 20448063..20448287 | 17..241 | 1125 | 100 | Plus |
2L | 23513712 | 2L | 20457180..20457404 | 17..241 | 1125 | 100 | Plus |
2L | 23513712 | 2L | 20448937..20449032 | 758..853 | 465 | 99 | Plus |
2L | 23513712 | 2L | 20458054..20458149 | 758..853 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:04:11 has no hits.
BS16490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:18 Download gff for
BS16490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-PA | 432..1266 | 17..851 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:44 Download gff for
BS16490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 866..1702 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:06 Download gff for
BS16490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 866..1702 | 17..853 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:06 Download gff for
BS16490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20448063..20448285 | 17..239 | 100 | <- | Plus |
2L | 20448351..20448873 | 240..762 | 100 | <- | Plus |
2L | 20448942..20449032 | 763..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:44 Download gff for
BS16490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20448063..20448285 | 17..239 | 100 | <- | Plus |
arm_2L | 20448351..20448873 | 240..762 | 100 | <- | Plus |
arm_2L | 20448942..20449032 | 763..853 | 100 | | Plus |
BS16490.5prime Sequence
761 bp (759 high quality bases) assembled on 2007-05-15
> BS16490.5prime
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAA
AGTGTTTGCCA
BS16490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-PA | 1266 | CG31683-RA | 1..745 | 17..761 | 3725 | 100 | Plus |
CG18858-PA | 1266 | CG18858-RA | 1..745 | 17..761 | 3700 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-RB | 1823 | CG31683-RB | 437..1181 | 17..761 | 3725 | 100 | Plus |
CG31683-RA | 2031 | CG31683-RA | 437..1181 | 17..761 | 3725 | 100 | Plus |
CG18858-RB | 2029 | CG18858-RB | 431..1175 | 17..761 | 3710 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20448937..20449314 | 541..164 | 1875 | 99.7 | Minus |
2L | 23513712 | 2L | 20458054..20458431 | 541..164 | 1860 | 99.5 | Minus |
2L | 23513712 | 2L | 20457766..20457994 | 761..533 | 1130 | 99.6 | Minus |
2L | 23513712 | 2L | 20448649..20448873 | 761..537 | 1125 | 100 | Minus |
2L | 23513712 | 2L | 20449381..20449528 | 164..17 | 740 | 100 | Minus |
2L | 23513712 | 2L | 20458498..20458645 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:47:58 has no hits.
BS16490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:42:43 Download gff for
BS16490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:55 Download gff for
BS16490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 437..1180 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:43:51 Download gff for
BS16490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 437..1180 | 17..760 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:43:51 Download gff for
BS16490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20448650..20448873 | 537..760 | 100 | <- | Minus |
2L | 20448942..20449313 | 165..536 | 100 | <- | Minus |
2L | 20449381..20449528 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:55 Download gff for
BS16490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20448650..20448873 | 537..760 | 100 | <- | Minus |
arm_2L | 20448942..20449313 | 165..536 | 100 | <- | Minus |
arm_2L | 20449381..20449528 | 17..164 | 100 | | Minus |
BS16490.complete Sequence
1298 bp assembled on 2007-05-07
GenBank Submission: FJ638152
> BS16490.complete
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAA
AGTGTTTGCCATGGGCGATGATCTCGACTCGTTCGCCCTGAGTGCCAAGA
TCCTCAAGGCGGAACAGATAACACACCCATCCACGGCCTGGTTGCTGCCC
TCGCCACTGTTTTGGAAGCCAACCGAGGTGCTCGCCATGACTCCAAGCAG
AAACTATACGATGGCACAGCTGGAAGAGTTCTTCAAAGACCTCGACTACA
TGACGGGCTGGGAAATGCGCAAGGACACGATTCGGTACAACCGAAACTTC
GATCCACCGAATGTGGAACTGCACTGTCTCTATGGCGAAGGCATCGACAC
GGTCGAGAGACTGCAGTACAAGAAATCGGACATTAGTGGGGAAACGCCCA
AGTTGATAATGGGTCTCGGCGACGGCACCGTTAACCAGCGTTCTCTGCGA
GCCTGCAAATATTGGGCGGGCTATTCTAAAGCGCCTATAAACACGCTCGC
TCTCCAGAACGTGGACCACTTGCACATCCTGTCCAATCCGGACGTCCTCA
AATATATCCGCACTGTCATGCAGCAGCCGTAAAAGCTTTCTAGACCAT
BS16490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-RB | 1266 | CG31683-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
CG31683-RA | 1266 | CG31683-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
CG18858-RB | 1266 | CG18858-PB | 1..1266 | 17..1282 | 6300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-RB | 1823 | CG31683-RB | 437..1702 | 17..1282 | 6330 | 100 | Plus |
CG31683-RA | 2031 | CG31683-RA | 437..1702 | 17..1282 | 6330 | 100 | Plus |
CG18858-RB | 2029 | CG18858-RB | 431..1696 | 17..1282 | 6300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20448351..20448873 | 1059..537 | 2615 | 100 | Minus |
2L | 23513712 | 2L | 20457468..20457994 | 1059..533 | 2605 | 99.6 | Minus |
2L | 23513712 | 2L | 20448937..20449314 | 541..164 | 1875 | 99.7 | Minus |
2L | 23513712 | 2L | 20458054..20458431 | 541..164 | 1860 | 99.5 | Minus |
2L | 23513712 | 2L | 20448063..20448287 | 1282..1058 | 1125 | 100 | Minus |
2L | 23513712 | 2L | 20457180..20457404 | 1282..1058 | 1125 | 100 | Minus |
2L | 23513712 | 2L | 20449381..20449528 | 164..17 | 740 | 100 | Minus |
2L | 23513712 | 2L | 20458498..20458645 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:08:30 has no hits.
BS16490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:55 Download gff for
BS16490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 1..1266 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:06 Download gff for
BS16490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 446..1711 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:51 Download gff for
BS16490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 437..1700 | 17..1280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:55 Download gff for
BS16490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 446..1711 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:39 Download gff for
BS16490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 437..1700 | 17..1280 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:39 Download gff for
BS16490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20448065..20448285 | 1060..1280 | 100 | <- | Minus |
2L | 20448351..20448873 | 537..1059 | 100 | <- | Minus |
2L | 20448942..20449313 | 165..536 | 100 | <- | Minus |
2L | 20449381..20449528 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:51 Download gff for
BS16490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20448065..20448285 | 1060..1280 | 100 | <- | Minus |
arm_2L | 20448351..20448873 | 537..1059 | 100 | <- | Minus |
arm_2L | 20448942..20449313 | 165..536 | 100 | <- | Minus |
arm_2L | 20449381..20449528 | 17..164 | 100 | | Minus |
BS16490.pep Sequence
Translation from 16 to 1281
> BS16490.pep
MRLKSGVLSLLLLTTFLALGECFWPFSKWHGRNDNPSAPPEPKLSPVIFV
PGDGGSQMDARLNKPNSPYLICQKTHDWYNLWLDLEQLVIPIVYCWIDNV
KLYYDKVTRTTHNTPGVETRIPGWGNPEVVEWIDPTKNSAGAYFKDIANE
LVKLGYIRKQNIHGAPYDFRKAPNENQQFFIDLKQLVEDSYEANNQSAVT
FISHSMGSLMTLVFLQEQTLQWKAKYVKRMISLAGVWAGSFKAVKVFAMG
DDLDSFALSAKILKAEQITHPSTAWLLPSPLFWKPTEVLAMTPSRNYTMA
QLEEFFKDLDYMTGWEMRKDTIRYNRNFDPPNVELHCLYGEGIDTVERLQ
YKKSDISGETPKLIMGLGDGTVNQRSLRACKYWAGYSKAPINTLALQNVD
HLHILSNPDVLKYIRTVMQQP*
BS16490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-PB | 421 | CG31683-PB | 1..421 | 1..421 | 2266 | 100 | Plus |
CG31683-PA | 421 | CG31683-PA | 1..421 | 1..421 | 2266 | 100 | Plus |
CG18858-PB | 421 | CG18858-PB | 1..421 | 1..421 | 2259 | 99.5 | Plus |
CG18858-PA | 421 | CG18858-PA | 1..421 | 1..421 | 2259 | 99.5 | Plus |