Clone Sequence Records
BS16491.complete Sequence
2939 bp assembled on 2009-12-08
GenBank Submission: KX805066
> BS16491.complete
GAAGTTATCAGTCGACATGGCATCAATATCGGATGACGGCATGGCGCTGA
GTGGCTACCTCAAGAAGCTGAAGACCATGAAGAAGAAGTTCTTTGTGCTG
TACGAGGAGACGAGCACTTCGGCAGCCCGGCTGGAGTACTACGATACCGA
AAAGAAGTTCCTGCAAAGAGCCGAGCCAAAAAGGGTTATATATCTGAAGA
ATTGCTTCAACATCAATCGCCGTTTGGACACCAAGCATAGATTTGTCATT
GTGCTCTCCTCCAGAGACGGTGGATTCGGCATCGTTCTCGAGAACGAAAA
TGATTTACGCAAATGGTTGGACAAACTACTAGTTCTACAAAGGAACATAG
CCAATTCGAATGGAACAGCGCACTCACCTTATGACCACGTTTGGCAAGTT
GTCATTCAAAAGAAGGGTATTTCGGAGAAAGTTGGAATCACCGGAACCTA
CCACTGTTGCCTTACTTCAAAATCCCTGACATTCGTGTGCATTGGACCGG
AGAAGACGCCCAATGGCGAGGATCGCGTTGCGAGCATTGAAATACTTTTG
ACCACGATCAGGCGATGCGGTCATGCATCCCCACAATGTATATTCTACGT
GGAACTTGGCCGCCAAAGTGTCTTGGGATCTGGTGATCTGTGGATGGAGA
CGGATAACGCAGCTATTGCTACTAATATGCACAACACGATACTGAGCGCT
ATGTCAGCCAAAACAGAGTCGAACACGAATTTAATAAACGTTTATCAGAA
TAGACCTGACTTAAGTCACGAGCCCATGAGAAAGCGATCGTCGTCTGCAA
ACGAAGCATCGAAGCCGATAAACGTAAATGTCATACAAAATAGTCAAAAC
TCTCTCGAATTGCGCAGCTGCAGTTCGCCCCATAACTATGGTTTCGGCAG
AGAGAGATGCGATAGCTTACCAACCAGAAATGGAACCCTAAGCGAGTCCA
GCAATCAAACGTACTTTGGTTCCAACCATGGACTGCGATCCAATACTATA
TCTGGCATCCGTCCGCACTCAACCAACAAGCATAGTAATAGTCCAACGTT
CACCATGCCATTAAGATGCTCAGAATCCGAAGAGTCATCAATTAGTGTCG
ATGAATCCGACGACAACGGCAGTTTTAGCCACTACAGATTAAACACGCGG
TCATCGGAGACGGCAATTCCTGAGGAAAACATTGATGACTTTGCCAGTGC
GGAATTATTTAGCAAAGTCACCGAACAAAATGTAAGTGACGAAAACTACA
TACCGATGAATCCAGTCAATCCTACCGATGCTATCCATGAAAAGGAGAAG
GCTGATATGCAGAGATTGGAAGATGCTTCGCTGCATTTCAACTTTCCGGA
GCACGCGTCGGAAAAGCTTGCTAAGGATTTTGATCTGGACTCTGATAACC
AATGCTGTCGTCCCATTCGCGCCTATTCGATAGGCAACAAGGTTGAGCAT
TTAAAGTTTAATAAGCGCCTGGGACACTTGAATGATACGGGACAGAATCC
GAATCGCGTGCGAGCCTACTCGGTTGGCTCCAAATCGAAGATACCGCGCT
GCGACCTGCAGCGAGTGGTCCTCGTGGAGGACAATAAACATGAGTTCACA
GCGAATAGGAGTCAGAGTAGCATTACCAAGGAAGGAACCAGCTATGGCAG
CAGTGCCAATCGACAAAAGAAGTCCACAAGTGCTCCACTCCTCAGTCTGA
AGAACCAGATAAACTCCGACCGAATGAGTGACTTAATGGAAATTGATTTT
TCACAAGCAACCAATTTGGAAAAGCAGAAGTTCATCAAGAATAATGAAAT
TCCGAAATACATTGAAAACGTGTTCCCAAAAGCCCCGCGAACGGATAGCT
CCAGCCTAACTCTGCACGCCACAAGTCAAAAGGACATTTTCAATGGCACC
AAACTAAATAACACTGCGATCACATCCGAGGATGGTTACCTCGAGATGAA
GCCAGTCGGTAATGGATACACTCCCAGTTCGAATTGCCTGCCAATGAAAG
TGGAGAAACTCAAGCTATCCGACTATCAGACAGCACCGCCACTCACCGCA
ACAGCCGCACCAGTGCACGATTTAAACAAAATTAGCACATACAATATATC
CGCTGAGAAATGGAGAGAACAGCCCAGCAGAAGCGAGGAAAAGAAGTCGA
ACTCGCCATTGAATGACAACACCTTTAGCTCGAAACCCACAAATGTCGAG
AGTACAAGCAAAAGCCATGATGTTCATTCAGCAAATCAAATTGATTGCGA
GAAAGTGTGCGCGCAGAGCAGCGATAAGCTAAATAATCATCTGGCCGACA
AGATTGTCGAGAACAACAATTTGGATATAGGCGGGCATGAGGAAAAGAAG
TTGGTTCATTCGATAAGCAGCGAAGACTACACACAAATCAAGGACAAATC
GAATGATTTCACAAAATTTAACGAAGCCGGCTACAAAATTCTGCAAATTA
AAAGCGACAGCTCACTCATCTCATCGAAGCTATACCAAAAGGGTATACAC
AAGGATAACTTGGAGCGTTCGCAGAGACTTACAGAGAGTGTGAATACGAT
TCCCGATAATGCCACCGCCACCGCGGTGAGCAGCAGCTCACTCACCAAAT
TCAATATAAATTCAGCAAAGCCAGCCGCCGCCGCCGATTCGCGTAGCACT
GGCACAGATCCAAGTACACCACAGAACATTCTACAGATTAAAGATTTGAA
TTTCCCCTCAAGGTCGTCGTCTCGCATATCCCAGCCGGAGCTGCACTACG
CCAGCCTAGATCTTCCCCATTGCAGTGGCCAAAATCCAGCTAAATACCTG
AAGAGAGGATCACGCGAATCGCCGCCGGTGTCCGCATGCCCGGAGGATGG
GAATACCTATGCGAAAATCGACTTTGACCAATCCGACTCCTCTTCCTCCT
CATCGAACATATTTAATACGTAAAAGCTTTCTAGACCAT
BS16491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-RC | 2907 | CG5686-PC | 1..2907 | 17..2923 | 14535 | 100 | Plus |
| chico-RB | 2907 | CG5686-PB | 1..2907 | 17..2923 | 14535 | 100 | Plus |
| chico-RA | 2907 | CG5686-PA | 1..2907 | 17..2923 | 14535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-RC | 3578 | CG5686-RC | 546..3454 | 16..2924 | 14545 | 100 | Plus |
| chico-RB | 3104 | CG5686-RB | 72..2980 | 16..2924 | 14545 | 100 | Plus |
| chico-RA | 3229 | CG5686-RA | 197..3105 | 16..2924 | 14545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10242636..10244158 | 2924..1402 | 7615 | 100 | Minus |
| 2L | 23513712 | 2L | 10245655..10246022 | 383..16 | 1840 | 100 | Minus |
| 2L | 23513712 | 2L | 10244601..10244854 | 1143..890 | 1270 | 100 | Minus |
| 2L | 23513712 | 2L | 10244908..10245105 | 892..695 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 10245410..10245591 | 564..383 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 10244219..10244388 | 1401..1232 | 850 | 100 | Minus |
| 2L | 23513712 | 2L | 10245220..10245352 | 696..564 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 10244457..10244545 | 1232..1144 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:52:29 has no hits.
BS16491.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:34 Download gff for
BS16491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 184..3088 | 17..2921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:11 Download gff for
BS16491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 198..3102 | 17..2921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:42 Download gff for
BS16491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 184..3088 | 17..2921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:54 Download gff for
BS16491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 198..3102 | 17..2921 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:54 Download gff for
BS16491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10245410..10245590 | 384..564 | 100 | <- | Minus |
| 2L | 10242639..10244158 | 1402..2921 | 100 | <- | Minus |
| 2L | 10244219..10244387 | 1233..1401 | 100 | <- | Minus |
| 2L | 10244457..10244545 | 1144..1232 | 100 | <- | Minus |
| 2L | 10244601..10244853 | 891..1143 | 100 | <- | Minus |
| 2L | 10244910..10245103 | 697..890 | 100 | <- | Minus |
| 2L | 10245220..10245351 | 565..696 | 100 | <- | Minus |
| 2L | 10245655..10246021 | 17..383 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:11 Download gff for
BS16491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10242639..10244158 | 1402..2921 | 100 | <- | Minus |
| arm_2L | 10244219..10244387 | 1233..1401 | 100 | <- | Minus |
| arm_2L | 10244457..10244545 | 1144..1232 | 100 | <- | Minus |
| arm_2L | 10244601..10244853 | 891..1143 | 100 | <- | Minus |
| arm_2L | 10244910..10245103 | 697..890 | 100 | <- | Minus |
| arm_2L | 10245220..10245351 | 565..696 | 100 | <- | Minus |
| arm_2L | 10245410..10245590 | 384..564 | 100 | <- | Minus |
| arm_2L | 10245655..10246021 | 17..383 | 100 | | Minus |
BS16491.3prime Sequence
886 bp (839 high quality bases) assembled on 2007-05-15
> BS16491.3prime
ATGGTCTAGAAAGCTTTTACGTATTAAATATGTTCGATGAGGAGGAAGAG
GAGTCGGATTGGTCAAAGTCGATTTTCGCATAGGTATTCCCATCCTCCGG
GCATGCGGACACCGGCGGCGATTCGCGTGATCCTCTCTTCAGGTATTTAG
CTGGATTTTGGCCACTGCAATGGGGAAGATCTAGGCTGGCGTAGTGCAGC
TCCGGCTGGGATATGCGAGACGACGACCTTGAGGGGAAATTCAAATCTTT
AATCTGTAGAATGTTCTGTGGTGTACTTGGATCTGTGCCAGTGCTACGCG
AATCGGCGGCGGCGGCTGGCTTTGCTGAATTTATATTGAATTTGGTGAGT
GAGCTGCTGCTCACCGCGGTGGCGGTGGCATTATCGGGAATCGTATTCAC
ACTCTCTGTAAGTCTCTGCGAACGCTCCAAGTTATCCTTGTGTATACCCT
TTTGGTATAGCTTCGATGAGATGAGTGAGCTGTCGCTTTTAATTTGCAGA
ATTTTGTAGCCGGCTTCGTTAAATTTTGTGAAATCATTCGATTTGTCCTT
GATTTGTGTGTAGTCTTCGCTGCTTATCGAATGAACCAACTTCTTTTCCT
CATGCCCGCCTATATCCAAATTGTTGTTCTCGACAATCTTGTCGGCCAGA
TGATTATTTAGCTTATCGCTGCTCTGCGCGCACACTTTCTCGCAATCAAT
TTGATTTGCTGAATGAACATCATGGCTTTTGCTTGTACTCTCGACATTTG
TGGGTTTCGAGCTAAAGGTGTTGTCATTCAATGGCGAGTTCGACTTCTTT
TCCTCGCTTCTGCTGGGCTGTTCTCTCCATTTCTCAGCGGATATATTGTA
TGTGCTAATTTTGTTTAAATCGTGCACTGGTGCGGC
BS16491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5686-PA | 2907 | chico-RA | 2038..2907 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-RC | 3578 | CG5686-RC | 2584..3454 | 886..16 | 4355 | 100 | Minus |
| chico-RB | 3104 | CG5686-RB | 2110..2980 | 886..16 | 4355 | 100 | Minus |
| chico-RA | 3229 | CG5686-RA | 2235..3105 | 886..16 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10242636..10243506 | 16..886 | 4355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:54:40 has no hits.
BS16491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:01 Download gff for
BS16491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5686-PA | 2038..2907 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:38 Download gff for
BS16491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 2235..3112 | 5..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:27 Download gff for
BS16491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 2235..3112 | 5..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:27 Download gff for
BS16491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10242629..10243506 | 5..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:38 Download gff for
BS16491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10242629..10243506 | 5..886 | 99 | | Plus |
BS16491.5prime Sequence
670 bp (621 high quality bases) assembled on 2007-05-15
> BS16491.5prime
GAAGTTATCAGTCGACATGGCATCAATATCGGATGACGGCATGGCGCTGA
GTGGCTACCTCAAGAAGCTGAAGACCATGAAGAAGAAGTTCTTTGTGCTG
TACGAGGAGACGAGCACTTCGGCAGCCCGGCTGGAGTACTACGATACCGA
AAAGAAGTTCCTGCAAAGAGCCGAGCCAAAAAGGGTTATATATCTGAAGA
ATTGCTTCAACATCAATCGCCGTTTGGACACCAAGCATAGATTTGTCATT
GTGCTCTCCTCCAGAGACGGTGGATTCGGCATCGTTCTCGAGAACGAAAA
TGATTTACGCAAATGGTTGGACAAACTACTAGTTCTACAAAGGAACATAG
CCAATTCGAATGGAACAGCGCACTCACCTTATGACCACGTTTGGCAAGTT
GTCATTCAAAAGAAGGGTATTTCGGAGAAAGTTGGAATCACCGGAACCTA
CCACTGTTGCCTTACTTCAAAATCCCTGACATTCGTGTGCATTGGACCGG
AGAAGACGCCCAATGGCGAGGATCGCGTTGCGAGCATTGAAATACTTTTG
ACCACGATCAGGCGATGCGGTCATGCATCCCCACAATGTATATTCTACGT
GGAACTTGGCCGCCAAAGTGTCTTGGGATCTGGTGATCTGTGGATGGAGA
CGGATAACGCAGCTATTGCT
BS16491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5686-PA | 2907 | chico-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-RC | 3578 | CG5686-RC | 546..1200 | 16..670 | 3275 | 100 | Plus |
| chico-RB | 3104 | CG5686-RB | 72..726 | 16..670 | 3275 | 100 | Plus |
| chico-RA | 3229 | CG5686-RA | 197..851 | 16..670 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10245655..10246022 | 383..16 | 1840 | 100 | Minus |
| 2L | 23513712 | 2L | 10245410..10245591 | 564..383 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 10245246..10245352 | 670..564 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 14:58:25 has no hits.
BS16491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:06 Download gff for
BS16491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5686-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:15 Download gff for
BS16491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 197..851 | 16..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:43 Download gff for
BS16491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 197..851 | 16..670 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:43 Download gff for
BS16491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10245655..10246022 | 16..383 | 100 | | Minus |
| 2L | 10245246..10245351 | 565..670 | 100 | <- | Minus |
| 2L | 10245410..10245590 | 384..564 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:15 Download gff for
BS16491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10245246..10245351 | 565..670 | 100 | <- | Minus |
| arm_2L | 10245410..10245590 | 384..564 | 100 | <- | Minus |
| arm_2L | 10245655..10246022 | 16..383 | 100 | | Minus |
BS16491.pep Sequence
Translation from 16 to 2922
> BS16491.pep
MASISDDGMALSGYLKKLKTMKKKFFVLYEETSTSAARLEYYDTEKKFLQ
RAEPKRVIYLKNCFNINRRLDTKHRFVIVLSSRDGGFGIVLENENDLRKW
LDKLLVLQRNIANSNGTAHSPYDHVWQVVIQKKGISEKVGITGTYHCCLT
SKSLTFVCIGPEKTPNGEDRVASIEILLTTIRRCGHASPQCIFYVELGRQ
SVLGSGDLWMETDNAAIATNMHNTILSAMSAKTESNTNLINVYQNRPDLS
HEPMRKRSSSANEASKPINVNVIQNSQNSLELRSCSSPHNYGFGRERCDS
LPTRNGTLSESSNQTYFGSNHGLRSNTISGIRPHSTNKHSNSPTFTMPLR
CSESEESSISVDESDDNGSFSHYRLNTRSSETAIPEENIDDFASAELFSK
VTEQNVSDENYIPMNPVNPTDAIHEKEKADMQRLEDASLHFNFPEHASEK
LAKDFDLDSDNQCCRPIRAYSIGNKVEHLKFNKRLGHLNDTGQNPNRVRA
YSVGSKSKIPRCDLQRVVLVEDNKHEFTANRSQSSITKEGTSYGSSANRQ
KKSTSAPLLSLKNQINSDRMSDLMEIDFSQATNLEKQKFIKNNEIPKYIE
NVFPKAPRTDSSSLTLHATSQKDIFNGTKLNNTAITSEDGYLEMKPVGNG
YTPSSNCLPMKVEKLKLSDYQTAPPLTATAAPVHDLNKISTYNISAEKWR
EQPSRSEEKKSNSPLNDNTFSSKPTNVESTSKSHDVHSANQIDCEKVCAQ
SSDKLNNHLADKIVENNNLDIGGHEEKKLVHSISSEDYTQIKDKSNDFTK
FNEAGYKILQIKSDSSLISSKLYQKGIHKDNLERSQRLTESVNTIPDNAT
ATAVSSSSLTKFNINSAKPAAAADSRSTGTDPSTPQNILQIKDLNFPSRS
SSRISQPELHYASLDLPHCSGQNPAKYLKRGSRESPPVSACPEDGNTYAK
IDFDQSDSSSSSSNIFNT*
BS16491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-PC | 968 | CG5686-PC | 1..968 | 1..968 | 5018 | 100 | Plus |
| chico-PB | 968 | CG5686-PB | 1..968 | 1..968 | 5018 | 100 | Plus |
| chico-PA | 968 | CG5686-PA | 1..968 | 1..968 | 5018 | 100 | Plus |
