Clone Sequence Records
BS16492.3prime Sequence
870 bp (808 high quality bases) assembled on 2007-05-15
> BS16492.3prime
ATGGTCTAGAAAGCTTTTAGATAATATCACGTGGCACACTCAGGAAGTGT
ATGGAATTGGACACATGATGTGTGATGTCCGTTAGTGTCTCCTTGTGCAC
GCCCCCGAAGAGGATGAGCTCGCCGTTGCCAGCAATGAGGCTCGAGAGGA
TTAGCCGATCCGGAGCACCCTTAAGCACTCCGAAGTTTTTGTATTCCACC
CACTCGAGGGCGGGTTCGCTGCTGTCCAAAATGCCGGAGATGTCACACAC
GAACAGGGATTGCACATTGCAGCGCAATCGTTTGGGCGAGGGTGCGCGCA
GCGGTTGTGGTTCCACTTGGGCGGCCGCCGGTGCGCTGCGTCGCGAATTG
CGAATGGCGTTCATCTTCTCCTCCATGCGTCGTATTCGCTCGTTGTGATC
CCGCGAAGCACTCCGCGATCGTGTGGGCACATTGAAGGCGGCCATTCGAA
AGGGATCCTCATAGAGCTCATCGAAACGTTTTGGTAGCCTAGGTTCATTA
TCACGACACCTTAGAGCTAAATTTCTTTGCAAACGCTGTGCGGCATCCAC
ATCGCCGTCGGCGGGAGATGGCGGAGCATTTGGTCGCACTGGCGGGGATG
GAGGAGAAGCAGCTGCAGCCGCAGCTGGCGGGGCATGCAGATCACTCAAT
CTTCCCGAGCGCGGTTGGTAATTATTGTTATTATTGTTCACATTGCTGTT
GTGCAGGAATTGCTGCGCTTGCTGCATGTGTTGATTAAGAATTGCTCTCC
GGTTAGCCAAATACTGTTCTTGAGGACCCAGTGCAGCTGCTGCACCTCCC
ACTCCAGGACGGATGTTTCCTCCGCGATTTTGGCCAGGTCCACCCCATCC
ACCTCCACCTAGTCGACGAT
BS16492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6758-PA | 2004 | CG6758-RA | 1151..2004 | 870..17 | 4245 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6758-RA | 2392 | CG6758-RA | 1366..2219 | 870..17 | 4255 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22176813..22177255 | 459..17 | 2215 | 100 | Minus |
| 2R | 25286936 | 2R | 22176345..22176758 | 870..457 | 2055 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:07:04 has no hits.
BS16492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:45:11 Download gff for
BS16492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-PA | 1151..2004 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:31 Download gff for
BS16492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-RA | 1366..2226 | 5..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:34 Download gff for
BS16492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-RA | 1366..2226 | 5..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:34 Download gff for
BS16492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22176345..22176757 | 458..870 | 99 | -> | Minus |
| 2R | 22176815..22177262 | 5..457 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:31 Download gff for
BS16492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18063850..18064262 | 458..870 | 99 | -> | Minus |
| arm_2R | 18064320..18064767 | 5..457 | 98 | | Minus |
BS16492.5prime Sequence
870 bp (790 high quality bases) assembled on 2007-05-15
> BS16492.5prime
GAAGTTATCAGTCGACATGGACGCGAGCAGATACAAGGTCGACGGCGAGA
ACGACAATTGCGGGGCGACCTTGGCCGCTGTAAATCTGAATGTCCTTCCC
GATGAGATACTGGAGTTCATATTCACCTACCTGCCACCCTACGGCGACTT
GGAGCACTGCAGCCTGGTGTGCAAGCGATGGCACGCCATTGTGAAGAACC
TTGTGCGTCGTTCCAGACACAATCTCGAGAAGGGCCTCATCGACTTTCGA
CTGCGCTGGGAGGTGTTTTCCCAGCAGACAGTCAATGGCGGGGCAGGAGC
ACTATTATCCTTTATTGCCGGAAGATTTGCTCATTCGGCTGTGCGGCAAG
ACAACTCCATGTACGTATTCGGCGGTGGATCCTCGTCGGACACCACCTTC
AACGATCTGTGGCGCTTTGATTTGACGCACATGCGGTGGGCGCGGCCAGT
GGCCACAGGAACCTATCCCTCGCCCAAGGGCAGTGCATCAATGGTGGCGT
GGCGGAACCAGCTGATACTCTTTGGCGGATGGCGATACCCCTCGCTACAT
CCGCCCTACCAACCATGGTGCTTATTTGACGAGCTGCACTACTACGATCT
TGGAAAGAACCGTTGGCTGCTGCGAAGCTCCCTATCTTCCCCACCACCGA
TGGCTGGACACTCGGCCACGGTACATGGCGATCGGATGGTAGTTTTTGGT
GGTTACCAGATCAAAGACGATTTCAATGTGAACTCGAACGACACATGGGT
ACTGGATCTGCCGGAGCAGCGCTGGTGGCAGCCGCTCTTTGTGGGCAACA
CGCGACCCAGTCCGCGATACGGACAAATACAGGTGGGAGTGGGAAAGAAC
CATCTGCTGATCGTGGGAGG
BS16492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6758-PA | 2004 | CG6758-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6758-RA | 2392 | CG6758-RA | 216..1069 | 17..870 | 4210 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22175376..22176048 | 198..870 | 3305 | 99.4 | Plus |
| 2R | 25286936 | 2R | 22175137..22175317 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:59:22 has no hits.
BS16492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:40:16 Download gff for
BS16492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:22 Download gff for
BS16492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-RA | 213..1069 | 10..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:03 Download gff for
BS16492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-RA | 213..1069 | 10..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:03 Download gff for
BS16492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22175134..22175317 | 10..197 | 97 | -> | Plus |
| 2R | 22175376..22176048 | 198..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:22 Download gff for
BS16492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18062639..18062822 | 10..197 | 97 | -> | Plus |
| arm_2R | 18062881..18063553 | 198..870 | 99 | | Plus |
BS16492.complete Sequence
2036 bp assembled on 2009-12-07
GenBank Submission: KX801060
> BS16492.complete
GAAGTTATCAGTCGACATGGACGCGAGCAGATACAAGGTCGACGGCGAGA
ACGACAATTGCGGGGCGACCTTGGCCGCTGTAAATCTGAATGTCCTTCCC
GATGAGATACTGGAGTTCATATTCACCTACCTGCCACCCTACGGCGACTT
GGAGCACTGCAGCCTGGTGTGCAAGCGATGGCACGCCATTGTGAAGAACC
TTGTGCGTCGTTCCAGACACAATCTCGAGAAGGGCCTCATCGACTTTCGA
CTGCGCTGGGAGGTGTTTTCCCAGCAGACAGTCAATGGCGGGGCAGGAGC
ACTATTATCCTTTATTGCCGGAAGATTTGCTCATTCGGCTGTGCGGCAAG
ACAACTCCATGTACGTATTCGGCGGTGGATCCTCGTCGGACACCACCTTC
AACGATCTGTGGCGCTTTGATTTGACGCACATGCGGTGGGCGCGGCCAGT
GGCCACAGGAACCTATCCCTCGCCCAAGGGCAGTGCATCAATGGTGGCGT
GGCGGAACCAGCTGATACTCTTTGGCGGATGGCGATACCCCTCGCTACAT
CCGCCCTACCAACCATGGTGCTTATTTGACGAGCTGCACTACTACGATCT
TGGAAAGAACCGTTGGCTGCTGCGAAGCTCCCTATCTTCCCCACCACCGA
TGGCTGGACACTCGGCCACGGTACATGGCGATCGGATGGTAGTTTTTGGT
GGTTACCAGATCAAAGACGATTTCAATGTGAACTCGAACGACACATGGGT
ACTGGATCTGCCGGAGCAGCGCTGGTGGCAGCCGCTCTTTGTGGGCAACA
CGCGACCCAGTCCGCGATACGGACAAATACAGGTGGAGTTGGGAAGGAAC
CATCTGCTGATCGTGGGAGGATGTGGCGGTGCCAATCGCGTGTACACTGA
TGCCTGGCTGCTGGACATGACCAGGGATGTATGGAGCTGGAAGTCTATTG
CTGTGCGCAACAAGCGCTTTGGAGCCGTCCACATGTGGTGCAATCCCGGT
TGCAAGGTCAACAACTACCTGGTGGTCGTGGGCCCATCGCCCAACATGCC
GCAGGACTTCCAAATGATGAAGCAAAGCAGAGTCCCCGTCGTTGGAGGCC
GTGGACCTCCGCCGCCGAATCCTCTTCAAAATGTACCTCCAAGGGGATAC
CGGATACCAGTTCCGGATCGTCGACTAGGTGGAGGTGGATTGGGTGGACC
TGGCCAAAATCGCGGAGGAAACATCCGTCCTGGAGTGGGAGGTGCAGCAG
CTGCACTGGGTCCTCAAGAACAGTATTTGGCTAACCGGAGAGCAATTCTT
AATCAACACATGCAGCAAGCGCAGCAATTCCTGCACAACAGCAATGTGAA
CAATAATAACAATAATTACCAACCGCGCTCGGGAAGATTGAGTGATCTGC
ATGCCCCGCCAGCTGCGGCTGCAGCTGCTTCTCCTCCATCCCCGCCAGTG
CGACCAAATGCTCCGCCATCTCCCGCCGACGGCGATGTGGATGCCGCACA
GCGTTTGCAAAGAAATTTAGCTCTAAGGTGTCGTGATAATGAACCTAGGC
TACCAAAACGTTTCGATGAGCTCTATGAGGATCCCTTTCGAATGGCCGCC
TTCAATGTGCCCACACGATCGCGGAGTGCTTCGCGGGATCACAACGAGCG
AATACGACGCATGGAGGAGAAGATGAACGCCATTCGCAATTCGCGACGCA
GCGCACCGGCGGCCGCCCAAGTGGAACCACAACCGCTGCGCGCACCCTCG
CCCAAACGATTGCGCTGCAATGTGCAATCCCTGTTCGTGTGTGACATCTC
CGGCATTTTGGACAGCAGCGAACCCGCCCTCGAGTGGGTGGAATACAAAA
ACTTCGGAGTGCTTAAGGGTGCTCCGGATCGGCTAATCCTCTCGAGCCTC
ATTGCTGGCAACGGCGAGCTCATCCTCTTCGGGGGCGTGCACAAGGAGAC
ACTAACGGACATCACACATCATGTGTCCAATTCCATACACTTCCTGAGTG
TGCCACGTGATATTATCTAAAAGCTTTCTAGACCAT
BS16492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6758-RA | 2004 | CG6758-PA | 1..2004 | 17..2020 | 10020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6758-RA | 2392 | CG6758-RA | 216..2219 | 17..2020 | 10020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22175376..22176758 | 198..1580 | 6915 | 100 | Plus |
| 2R | 25286936 | 2R | 22176813..22177255 | 1578..2020 | 2215 | 100 | Plus |
| 2R | 25286936 | 2R | 22175137..22175317 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:00:51 has no hits.
BS16492.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:24 Download gff for
BS16492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-RA | 232..2233 | 17..2018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:37 Download gff for
BS16492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-RA | 216..2217 | 17..2018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:45 Download gff for
BS16492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-RA | 232..2233 | 17..2018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:58 Download gff for
BS16492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6758-RA | 216..2217 | 17..2018 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:58 Download gff for
BS16492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22175137..22175317 | 17..197 | 100 | -> | Plus |
| 2R | 22175376..22176757 | 198..1579 | 100 | -> | Plus |
| 2R | 22176815..22177253 | 1580..2018 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:37 Download gff for
BS16492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18062642..18062822 | 17..197 | 100 | -> | Plus |
| arm_2R | 18062881..18064262 | 198..1579 | 100 | -> | Plus |
| arm_2R | 18064320..18064758 | 1580..2018 | 100 | | Plus |
BS16492.pep Sequence
Translation from 16 to 2019
> BS16492.pep
MDASRYKVDGENDNCGATLAAVNLNVLPDEILEFIFTYLPPYGDLEHCSL
VCKRWHAIVKNLVRRSRHNLEKGLIDFRLRWEVFSQQTVNGGAGALLSFI
AGRFAHSAVRQDNSMYVFGGGSSSDTTFNDLWRFDLTHMRWARPVATGTY
PSPKGSASMVAWRNQLILFGGWRYPSLHPPYQPWCLFDELHYYDLGKNRW
LLRSSLSSPPPMAGHSATVHGDRMVVFGGYQIKDDFNVNSNDTWVLDLPE
QRWWQPLFVGNTRPSPRYGQIQVELGRNHLLIVGGCGGANRVYTDAWLLD
MTRDVWSWKSIAVRNKRFGAVHMWCNPGCKVNNYLVVVGPSPNMPQDFQM
MKQSRVPVVGGRGPPPPNPLQNVPPRGYRIPVPDRRLGGGGLGGPGQNRG
GNIRPGVGGAAAALGPQEQYLANRRAILNQHMQQAQQFLHNSNVNNNNNN
YQPRSGRLSDLHAPPAAAAAASPPSPPVRPNAPPSPADGDVDAAQRLQRN
LALRCRDNEPRLPKRFDELYEDPFRMAAFNVPTRSRSASRDHNERIRRME
EKMNAIRNSRRSAPAAAQVEPQPLRAPSPKRLRCNVQSLFVCDISGILDS
SEPALEWVEYKNFGVLKGAPDRLILSSLIAGNGELILFGGVHKETLTDIT
HHVSNSIHFLSVPRDII*
BS16492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6758-PA | 667 | CG6758-PA | 1..667 | 1..667 | 3613 | 100 | Plus |
| CG3711-PE | 975 | CG3711-PE | 250..430 | 101..288 | 190 | 29.1 | Plus |
| CG3711-PD | 998 | CG3711-PD | 250..430 | 101..288 | 190 | 29.1 | Plus |
