Clone Sequence Records
BS16501.5prime Sequence
531 bp (368 high quality bases) assembled on 2007-05-15
> BS16501.5prime
GAAGTTATCAGTCGACATGCTGGACCTATACAGACGCACGGTGGCGCGGT
TTCCTCTGGGCAGTGTCAGCTATATGTTCGCCTACGGATCCGGCGTCAAA
CAGCAGGAAGGCTATGGAAAAGTCGGCAATGGAAACAACCTGCGTCCTCC
GCCGGGAACCGTTGTGGATCTGGTCTTTTGCGTTCGTGATGCTAGGGGCT
TCCATGCGGAGAACCTGCACCGTCATCCGGACCACTATTCCGCCCTTAGG
CACCTGGGACCGAACTTTGTGGCCAAGTATCAGGAGCGTTTGGGTGCGGG
TGTCTATTGCAACACGTTGGTGCCTCTGCCAGATGTGGGCATTACCATAA
AGTACGGCGTGGTGTCGCAGGAGGAGCTGCTGGAGGATCTGCTTGACTGG
CGGCATCTTTACTTGGCAGGAAGGCTGCACAAACCAGTGACGAATCTGGT
CAATCCTTCTGATAATCCTCCCCTCAAGGCTGCGCTGGAGAGGAATCTTG
TATCCGCGCTGCAAGTGGCTCTGCTACTTTT
BS16501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-PA | 1029 | CG33331-RA | 1..515 | 17..531 | 2575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-RA | 1284 | CG33331-RA | 127..641 | 17..531 | 2575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14886582..14887096 | 17..531 | 2575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:03:44 has no hits.
BS16501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:22 Download gff for
BS16501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-PA | 1..515 | 17..531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:16 Download gff for
BS16501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 101..621 | 9..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:39 Download gff for
BS16501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 121..641 | 9..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:39 Download gff for
BS16501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14886576..14887096 | 9..531 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:16 Download gff for
BS16501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10712298..10712818 | 9..531 | 99 | | Plus |
BS16501.3prime Sequence
843 bp (733 high quality bases) assembled on 2007-05-15
> BS16501.3prime
ATGGTCTAGAAAGCTTCTAAACAGCGAATGTCTTTTGAGCCTTGCGATAG
CTATACGCCAATGACTTGAGAATGCCAGCACTGGGAATATTTTTGATCGA
TTGCGTGACACTGCTGCGCCACACAATGTCGTTGACGGATGCCTGCAGCA
CCTCCGGAAGCTGGGAGGCCATGGATAGGTGATTCACCACCTGGGTGTAG
TCGCCACGACAGGCGGCATTTCGCTGCAATCGCTTCTGAAGCTCTCGGGG
CAACTGTCGCAGGTGTTGGCATGTAGCCGATGAGGATTTGTCCTGCTCGA
AGATTATGGCTGGTTTCCGGCTCCCTGGTTCCTGGCCCTTCATGTTTACC
GCCACATAGTCGGAAAGTTGTCCCAGGGAGGGTTGGTATAGGGCGAAGAA
GTCATTGATTTGCGGACTAACTATGTTGTGCACTTTCTGTTTGTTTTCCC
CGAAAATCATACGGAAATCGCCCTTGTAACTCAGTCCGGCGATGGTGTGG
AAAAGTCCGTAGGCAGTGAACTTCTCTGGTAAAAGTAGCAGAGCCACTTG
CAGCGCGGATACAAGATTCCTCTCCAGCGCAGCCTTGAGGGGAGGATTAT
CAGAAGGATTGACCAGATTCGTCACTGGTTTGTGCAGCCTTCCTGCCAAG
TAAAGATGCCGCCAGTCAAGCAGATCCTCCAGCAGCTCCTCCTGCGACAC
CACGCCGTACTTTATGGTAATGCCCACATCTGGCAGAGGCACCAACGTGT
TGCAATAGACACCCGCACCCAAACGCTCCTGATACTTGGCCACAAAGTTC
GGTCCCAGGTGCCTAAGGGCGGAATAGTGGTCCGGATGACGGT
BS16501.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-PA | 1029 | CG33331-RA | 203..1029 | 843..17 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-RA | 1284 | CG33331-RA | 329..1155 | 843..17 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14886784..14887610 | 843..17 | 4135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:07:02 has no hits.
BS16501.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:52:52 Download gff for
BS16501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-PA | 203..1029 | 17..843 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:48 Download gff for
BS16501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 309..1139 | 10..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:32 Download gff for
BS16501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 329..1159 | 10..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:32 Download gff for
BS16501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14886784..14887614 | 10..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:48 Download gff for
BS16501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10712506..10713336 | 10..843 | 99 | | Minus |
BS16501.complete Sequence
1061 bp assembled on 2007-05-07
GenBank Submission: FJ638879
> BS16501.complete
GAAGTTATCAGTCGACATGCTGGACCTATACAGACGCACGGTGGCGCGGT
TTCCTCTGGGCAGTGTCAGCTATATGTTCGCCTACGGATCCGGCGTCAAA
CAGCAGGAAGGCTATGGAAAAGTCGGCAATGGAAACAACCTGCGTCCTCC
GCCGGGAACCGTTGTGGATCTGGTCTTTTGCGTTCGTGATGCTAGGGGCT
TCCATGCGGAGAACCTGCACCGTCATCCGGACCACTATTCCGCCCTTAGG
CACCTGGGACCGAACTTTGTGGCCAAGTATCAGGAGCGTTTGGGTGCGGG
TGTCTATTGCAACACGTTGGTGCCTCTGCCAGATGTGGGCATTACCATAA
AGTACGGCGTGGTGTCGCAGGAGGAGCTGCTGGAGGATCTGCTTGACTGG
CGGCATCTTTACTTGGCAGGAAGGCTGCACAAACCAGTGACGAATCTGGT
CAATCCTTCTGATAATCCTCCCCTCAAGGCTGCGCTGGAGAGGAATCTTG
TATCCGCGCTGCAAGTGGCTCTGCTACTTTTACCAGAGAAGTTCACTGCC
TACGGACTTTTCCACACCATCGCCGGACTGAGTTACAAGGGCGATTTCCG
TATGATTTTCGGGGAAAACAAACAGAAAGTGCACAACATAGTTAGTCCGC
AAATCAATGACTTCTTCGCCCTATACCAACCCTCCCTGGGACAACTTTCC
GACTATGTGGCGGTAAACATGAAGGGCCAGGAACCAGGGAGCCGGAAACC
AGCCATAATCTTCGAGCAGGACAAATCCTCATCGGCTACATGCCAACACC
TGCGACAGTTGCCCCGAGAGCTTCAGAAGCGATTGCAGCGAAATGCCGCC
TGTCGTGGCGACTACACCCAGGTGGTGAATCACCTATCCATGGCCTCCCA
GCTTCCGGAGGTGCTGCAGGCATCCGTCAACGACATTGTGTGGCGCAGCA
GTGTCACGCAATCGATCAAAAATATTCCCAGTGCTGGCATTCTCAAGTCA
TTGGCGTATAGCTATCGCAAGGCTCAAAAGACATTCGCTGTTTAGAAGCT
TTCTAGACCAT
BS16501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-RA | 1029 | CG33331-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-RA | 1284 | CG33331-RA | 127..1155 | 17..1045 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14886582..14887610 | 17..1045 | 5145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:30:06 has no hits.
BS16501.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:56 Download gff for
BS16501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 1..1029 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:08 Download gff for
BS16501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 101..1135 | 9..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:49 Download gff for
BS16501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 107..1135 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:57 Download gff for
BS16501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 101..1135 | 9..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:59 Download gff for
BS16501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 127..1155 | 17..1045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:59 Download gff for
BS16501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14886582..14887610 | 17..1045 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:49 Download gff for
BS16501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10712304..10713332 | 17..1045 | 100 | | Plus |
BS16501.pep Sequence
Translation from 16 to 1044
> BS16501.pep
MLDLYRRTVARFPLGSVSYMFAYGSGVKQQEGYGKVGNGNNLRPPPGTVV
DLVFCVRDARGFHAENLHRHPDHYSALRHLGPNFVAKYQERLGAGVYCNT
LVPLPDVGITIKYGVVSQEELLEDLLDWRHLYLAGRLHKPVTNLVNPSDN
PPLKAALERNLVSALQVALLLLPEKFTAYGLFHTIAGLSYKGDFRMIFGE
NKQKVHNIVSPQINDFFALYQPSLGQLSDYVAVNMKGQEPGSRKPAIIFE
QDKSSSATCQHLRQLPRELQKRLQRNAACRGDYTQVVNHLSMASQLPEVL
QASVNDIVWRSSVTQSIKNIPSAGILKSLAYSYRKAQKTFAV*
BS16501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-PA | 342 | CG33331-PA | 1..342 | 1..342 | 1780 | 100 | Plus |
