Clone Sequence Records
BS16504.3prime Sequence
887 bp (794 high quality bases) assembled on 2007-05-15
> BS16504.3prime
ATGGTCTAGAAAGCTTTCACAAGTTTCCTCGCTTGGCTTGTTCAATTTCA
ATGGCCGTGAACAAGGACTTAAAGTTGCCAGCGCCAAATCCATTGTGATT
GTAGCGTTGGATAACTTCCAGGAAGAGGGTCGGTCTATCCTGGCAGTTCT
TTGTGAAGATCTGCAGCAGATATCCGTTCTCGTCGAAGTCAATCAAAATG
TTCAACTTCTTCAAGACCTCCATGTCCTCCTTGATCTTGGTGCGGCTGTG
CGAGAGCTGCTCCTGAAGGATCTCGTAGTACGAGGATGGGATGGTCAGGA
ACTCGGTTCCTCGAGCCTTTAGGTTGCTCACCGCCTCGATAATGTCATCC
GTATTAAGAGCAATGTGCTGGACACCACCGCCGCCGTAGTACTCCACGTA
CTCCTGGATCTGTGACTTCTTTTTCCCATTGGCTGGCTCATTGATCGGCA
TCTTCACCGTCTCCTCGTAGTTTGCCATCACGATGGACCGCAGGGCGGAG
TATTCCGTGTGAATCTGCGAGTCATCCACGGACCAGAAGCGGTGGAACTG
CAGGATTCTCTCGTACCAGGAGGCCACGCTCTCCATCTGCAGATCCGGCT
GGTTGCCCACCACGTGATCAATGAAGTTCAGCTTGGTGGAGGGCAATCCG
TTTAGAAGGACATCTTTGGGCGACCGCTGGAATCCAGGCAGGAAATCTCC
AGCGTACCCATTGCGCTCCACGAAAGTGTGGGTAGTGTCGCCGTACGTCT
TGATGGTAGCGAATCTCACGAATCCCTGATCATCGCTCTCCTCCCAGATG
TCGCGGAACACTTCGGCCCCACGGGACACGGCCAGTGTGAAAATGGCATT
CAAATCCTCCACTTCGAAGGCTACATCCTTGACACCG
BS16504.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 1143 | CG11796-RA | 273..1143 | 887..17 | 4330 | 99.8 | Minus |
CG11796-PB | 885 | CG11796-RB | 15..885 | 887..17 | 4330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 1518 | CG11796-RB | 588..1459 | 887..16 | 4345 | 99.9 | Minus |
CG11796-RA | 1301 | CG11796-RA | 371..1242 | 887..16 | 4345 | 99.9 | Minus |
CG5872-RB | 1866 | CG5872-RB | 1721..1796 | 16..91 | 380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 91..746 | 3280 | 100 | Plus |
3L | 28110227 | 3L | 20439077..20439218 | 746..887 | 695 | 99.3 | Plus |
3L | 28110227 | 3L | 20438225..20438300 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:57:47 has no hits.
BS16504.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:48 Download gff for
BS16504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PB | 15..885 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:46:59 Download gff for
BS16504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 371..1242 | 16..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:01 Download gff for
BS16504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 371..1242 | 16..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:01 Download gff for
BS16504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438225..20438300 | 16..91 | 100 | <- | Plus |
3L | 20438365..20439018 | 92..745 | 100 | <- | Plus |
3L | 20439077..20439218 | 746..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:46:59 Download gff for
BS16504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431325..20431400 | 16..91 | 100 | <- | Plus |
arm_3L | 20431465..20432118 | 92..745 | 100 | <- | Plus |
arm_3L | 20432177..20432318 | 746..887 | 99 | | Plus |
BS16504.5prime Sequence
882 bp (864 high quality bases) assembled on 2007-05-15
> BS16504.5prime
GAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACCAAACCTG
AAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGTTGGCAAC
GCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCGAACCACT
TGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAGCATGCCG
TCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACACGCCGGAT
GACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATG
GCAAACTACGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGG
GAAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTG
GTGTCCAGCACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGC
AACCTAAAGGCTCGAGGAAAACGAGTCCTGAC
BS16504.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 1143 | CG11796-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
CG11796-PB | 885 | CG11796-RB | 1..595 | 275..869 | 2975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RA | 1301 | CG11796-RA | 99..964 | 17..882 | 4270 | 99.7 | Plus |
CG11796-RB | 1518 | CG11796-RB | 318..1181 | 19..882 | 4260 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438580..20439019 | 869..430 | 2200 | 100 | Minus |
3L | 28110227 | 3L | 20439077..20439460 | 430..47 | 1920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:23 has no hits.
BS16504.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:18 Download gff for
BS16504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:18 Download gff for
BS16504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 92..964 | 10..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:10 Download gff for
BS16504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 92..964 | 10..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:10 Download gff for
BS16504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438567..20439018 | 431..882 | 99 | <- | Minus |
3L | 20439077..20439460 | 47..430 | 100 | <- | Minus |
3L | 20439528..20439558 | 15..46 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:18 Download gff for
BS16504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431667..20432118 | 431..882 | 99 | <- | Minus |
arm_3L | 20432177..20432560 | 47..430 | 100 | <- | Minus |
arm_3L | 20432628..20432658 | 15..46 | 96 | | Minus |
BS16504.complete Sequence
1175 bp assembled on 2007-05-07
GenBank Submission: FJ638153
> BS16504.complete
GAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACCAAACCTG
AAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGTTGGCAAC
GCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCGAACCACT
TGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAGCATGCCG
TCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACACGCCGGAT
GACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATG
GCAAACTACGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGG
GAAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTG
GTGTCCAGCACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGC
AACCTAAAGGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTA
CGAGATCCTTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGG
ACATGGAGGTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAAC
GGATATCTGCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCT
CTTCCTGGAAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCA
ACTTTAAGTCCTTGTTCACGGCCATTGAAATTGAACAAGCCAAGCGAGGA
AACTTGTGAAAGCTTTCTAGACCAT
BS16504.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RA | 1143 | CG11796-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
CG11796-RB | 885 | CG11796-PB | 1..885 | 275..1159 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RA | 1301 | CG11796-RA | 99..1242 | 17..1160 | 5720 | 100 | Plus |
CG11796-RB | 1518 | CG11796-RB | 318..1459 | 19..1160 | 5710 | 100 | Plus |
CG5872-RB | 1866 | CG5872-RB | 1721..1796 | 1160..1085 | 380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 1085..430 | 3280 | 100 | Minus |
3L | 28110227 | 3L | 20439077..20439460 | 430..47 | 1920 | 100 | Minus |
3L | 28110227 | 3L | 20438225..20438300 | 1160..1085 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:16:03 has no hits.
BS16504.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:58 Download gff for
BS16504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 1..1143 | 17..1159 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:10 Download gff for
BS16504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 88..1238 | 10..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:10 Download gff for
BS16504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 99..1240 | 17..1158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:58 Download gff for
BS16504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 88..1238 | 10..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:52 Download gff for
BS16504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 99..1240 | 17..1158 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:52 Download gff for
BS16504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438227..20438300 | 1085..1158 | 100 | <- | Minus |
3L | 20438365..20439018 | 431..1084 | 100 | <- | Minus |
3L | 20439077..20439460 | 47..430 | 100 | <- | Minus |
3L | 20439528..20439556 | 17..46 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:10 Download gff for
BS16504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431327..20431400 | 1085..1158 | 100 | <- | Minus |
arm_3L | 20431465..20432118 | 431..1084 | 100 | <- | Minus |
arm_3L | 20432177..20432560 | 47..430 | 100 | <- | Minus |
arm_3L | 20432628..20432656 | 17..46 | 96 | | Minus |
BS16504.pep Sequence
Translation from 16 to 1158
> BS16504.pep
MTSYTDKGTKPEAGKFLSFDHLTFYVGNAKQAASYYTTRLGFEPLGYQGL
ETGERRFAKHAVRQNKIVFVFVSAYTPDDEEHGLHLMRHGDGVKDVAFEV
EDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATIKTYGDTTHTFVERN
GYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGNQPDLQMESVASWYE
RILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVKMPINEPANGKKKSQ
IQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTEFLTIPSSYYEILQE
QLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFTKNCQDRPTLFLEVI
QRYNHNGFGAGNFKSLFTAIEIEQAKRGNL*
BS16504.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 380 | CG11796-PA | 1..380 | 1..380 | 1989 | 100 | Plus |
CG11796-PB | 294 | CG11796-PB | 1..294 | 87..380 | 1532 | 100 | Plus |