Clone BS16504 Report

Search the DGRC for BS16504

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG11796-RA
Protein status:BS16504.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16504.3prime Sequence

887 bp (794 high quality bases) assembled on 2007-05-15

> BS16504.3prime
ATGGTCTAGAAAGCTTTCACAAGTTTCCTCGCTTGGCTTGTTCAATTTCA
ATGGCCGTGAACAAGGACTTAAAGTTGCCAGCGCCAAATCCATTGTGATT
GTAGCGTTGGATAACTTCCAGGAAGAGGGTCGGTCTATCCTGGCAGTTCT
TTGTGAAGATCTGCAGCAGATATCCGTTCTCGTCGAAGTCAATCAAAATG
TTCAACTTCTTCAAGACCTCCATGTCCTCCTTGATCTTGGTGCGGCTGTG
CGAGAGCTGCTCCTGAAGGATCTCGTAGTACGAGGATGGGATGGTCAGGA
ACTCGGTTCCTCGAGCCTTTAGGTTGCTCACCGCCTCGATAATGTCATCC
GTATTAAGAGCAATGTGCTGGACACCACCGCCGCCGTAGTACTCCACGTA
CTCCTGGATCTGTGACTTCTTTTTCCCATTGGCTGGCTCATTGATCGGCA
TCTTCACCGTCTCCTCGTAGTTTGCCATCACGATGGACCGCAGGGCGGAG
TATTCCGTGTGAATCTGCGAGTCATCCACGGACCAGAAGCGGTGGAACTG
CAGGATTCTCTCGTACCAGGAGGCCACGCTCTCCATCTGCAGATCCGGCT
GGTTGCCCACCACGTGATCAATGAAGTTCAGCTTGGTGGAGGGCAATCCG
TTTAGAAGGACATCTTTGGGCGACCGCTGGAATCCAGGCAGGAAATCTCC
AGCGTACCCATTGCGCTCCACGAAAGTGTGGGTAGTGTCGCCGTACGTCT
TGATGGTAGCGAATCTCACGAATCCCTGATCATCGCTCTCCTCCCAGATG
TCGCGGAACACTTCGGCCCCACGGGACACGGCCAGTGTGAAAATGGCATT
CAAATCCTCCACTTCGAAGGCTACATCCTTGACACCG

BS16504.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 1143 CG11796-RA 273..1143 887..17 4330 99.8 Minus
CG11796-PB 885 CG11796-RB 15..885 887..17 4330 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1518 CG11796-RB 588..1459 887..16 4345 99.9 Minus
CG11796-RA 1301 CG11796-RA 371..1242 887..16 4345 99.9 Minus
CG5872-RB 1866 CG5872-RB 1721..1796 16..91 380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 91..746 3280 100 Plus
3L 28110227 3L 20439077..20439218 746..887 695 99.3 Plus
3L 28110227 3L 20438225..20438300 16..91 380 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:57:47 has no hits.

BS16504.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:48 Download gff for BS16504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PB 15..885 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:46:59 Download gff for BS16504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 371..1242 16..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:01 Download gff for BS16504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 371..1242 16..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:01 Download gff for BS16504.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20438225..20438300 16..91 100 <- Plus
3L 20438365..20439018 92..745 100 <- Plus
3L 20439077..20439218 746..887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:46:59 Download gff for BS16504.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431325..20431400 16..91 100 <- Plus
arm_3L 20431465..20432118 92..745 100 <- Plus
arm_3L 20432177..20432318 746..887 99   Plus

BS16504.5prime Sequence

882 bp (864 high quality bases) assembled on 2007-05-15

> BS16504.5prime
GAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACCAAACCTG
AAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGTTGGCAAC
GCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCGAACCACT
TGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAGCATGCCG
TCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACACGCCGGAT
GACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATG
GCAAACTACGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGG
GAAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTG
GTGTCCAGCACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGC
AACCTAAAGGCTCGAGGAAAACGAGTCCTGAC

BS16504.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 1143 CG11796-RA 1..853 17..869 4265 100 Plus
CG11796-PB 885 CG11796-RB 1..595 275..869 2975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RA 1301 CG11796-RA 99..964 17..882 4270 99.7 Plus
CG11796-RB 1518 CG11796-RB 318..1181 19..882 4260 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438580..20439019 869..430 2200 100 Minus
3L 28110227 3L 20439077..20439460 430..47 1920 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:08:23 has no hits.

BS16504.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:18 Download gff for BS16504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:18 Download gff for BS16504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 92..964 10..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:10 Download gff for BS16504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 92..964 10..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:10 Download gff for BS16504.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20438567..20439018 431..882 99 <- Minus
3L 20439077..20439460 47..430 100 <- Minus
3L 20439528..20439558 15..46 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:18 Download gff for BS16504.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431667..20432118 431..882 99 <- Minus
arm_3L 20432177..20432560 47..430 100 <- Minus
arm_3L 20432628..20432658 15..46 96   Minus

BS16504.complete Sequence

1175 bp assembled on 2007-05-07

GenBank Submission: FJ638153

> BS16504.complete
GAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACCAAACCTG
AAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGTTGGCAAC
GCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCGAACCACT
TGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAGCATGCCG
TCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACACGCCGGAT
GACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATG
GCAAACTACGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGG
GAAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTG
GTGTCCAGCACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGC
AACCTAAAGGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTA
CGAGATCCTTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGG
ACATGGAGGTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAAC
GGATATCTGCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCT
CTTCCTGGAAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCA
ACTTTAAGTCCTTGTTCACGGCCATTGAAATTGAACAAGCCAAGCGAGGA
AACTTGTGAAAGCTTTCTAGACCAT

BS16504.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RA 1143 CG11796-PA 1..1143 17..1159 5715 100 Plus
CG11796-RB 885 CG11796-PB 1..885 275..1159 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RA 1301 CG11796-RA 99..1242 17..1160 5720 100 Plus
CG11796-RB 1518 CG11796-RB 318..1459 19..1160 5710 100 Plus
CG5872-RB 1866 CG5872-RB 1721..1796 1160..1085 380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 1085..430 3280 100 Minus
3L 28110227 3L 20439077..20439460 430..47 1920 100 Minus
3L 28110227 3L 20438225..20438300 1160..1085 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:16:03 has no hits.

BS16504.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:58 Download gff for BS16504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 17..1159 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:10 Download gff for BS16504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 88..1238 10..1160 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:10 Download gff for BS16504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 99..1240 17..1158 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:58 Download gff for BS16504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 88..1238 10..1160 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:52 Download gff for BS16504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 99..1240 17..1158 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:52 Download gff for BS16504.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438227..20438300 1085..1158 100 <- Minus
3L 20438365..20439018 431..1084 100 <- Minus
3L 20439077..20439460 47..430 100 <- Minus
3L 20439528..20439556 17..46 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:10 Download gff for BS16504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431327..20431400 1085..1158 100 <- Minus
arm_3L 20431465..20432118 431..1084 100 <- Minus
arm_3L 20432177..20432560 47..430 100 <- Minus
arm_3L 20432628..20432656 17..46 96   Minus

BS16504.pep Sequence

Translation from 16 to 1158

> BS16504.pep
MTSYTDKGTKPEAGKFLSFDHLTFYVGNAKQAASYYTTRLGFEPLGYQGL
ETGERRFAKHAVRQNKIVFVFVSAYTPDDEEHGLHLMRHGDGVKDVAFEV
EDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATIKTYGDTTHTFVERN
GYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGNQPDLQMESVASWYE
RILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVKMPINEPANGKKKSQ
IQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTEFLTIPSSYYEILQE
QLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFTKNCQDRPTLFLEVI
QRYNHNGFGAGNFKSLFTAIEIEQAKRGNL*

BS16504.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 380 CG11796-PA 1..380 1..380 1989 100 Plus
CG11796-PB 294 CG11796-PB 1..294 87..380 1532 100 Plus