Clone Sequence Records
BS16512.3prime Sequence
651 bp (651 high quality bases) assembled on 2007-05-15
> BS16512.3prime
ATGGTCTAGAAAGCTTCTAGCCGGCCTTTTGGGTCTGTTTTTGGCGTTGA
AGTGCCTCAAAGGCTTCGATTTCCTTCTTTTCTTTGGCCTGATTGCGACG
CTCATATTCCAGTCGGTGCGAGATGATGCGCTCCACGATGCGCTCCGTGG
TCATCTCGTTGCCGGAATCGATCAGCTCAAAGATGGCTCGCGTCTTGGGA
ACGGCATATGGATCGATCTTGCCATTCTCAAGCGCAATGGGTGTGCGTCC
ATGACAGACAACATCGATTTTGAAGTGCTCAAGCAGCTCTTCAGTGACAC
AGTAGGGAGCTCCGATTACTACCTCATTGACAAACTTGCAGGCCAAAACA
CTGAGCACGCGCTCGTGCAGATTCATAATGGGATAGTTGCTGCCCTTGTA
GGAGTTCACCACGGGATCTGTGTGCAGGCCAACAATCAGATAGTCACCCA
GTTTCTTAGCCTTTTCCAGAAAGTCCAGGTGACCCACATGGAAGAGATCG
AAGGCGCCAGCCACATAAACAATCTTATCGCCGGGATTCGGTGACTTTCC
ATCACTGAACTGTATGATCTTTTGGGTAGTCGGCAAGAACTGACTACAAC
CGGTCCACGGACTTTTGGCTGCCGAATCTTGACCCATGTCGACTGATAAC
T
BS16512.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5547-PB | 1182 | Pect-RB | 560..1182 | 639..17 | 3115 | 100 | Minus |
CG5547-PD | 1146 | Pect-RD | 524..1146 | 639..17 | 3115 | 100 | Minus |
CG5547-PA | 621 | Pect-RA | 1..621 | 637..17 | 3105 | 100 | Minus |
CG5547-PC | 1125 | Pect-RC | 512..1125 | 630..17 | 3070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-RD | 2174 | CG5547-RD | 952..1574 | 639..17 | 3115 | 100 | Minus |
Pect-RB | 2210 | CG5547-RB | 988..1610 | 639..17 | 3115 | 100 | Minus |
Pect-RC | 2153 | CG5547-RC | 940..1553 | 630..17 | 3070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13209909..13210228 | 336..17 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 13209660..13209845 | 520..335 | 930 | 100 | Minus |
2L | 23513712 | 2L | 13209481..13209601 | 639..519 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:21 has no hits.
BS16512.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:13 Download gff for
BS16512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5547-PD | 513..1146 | 17..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:41 Download gff for
BS16512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 977..1610 | 17..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:32 Download gff for
BS16512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 977..1610 | 17..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:32 Download gff for
BS16512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13209470..13209599 | 521..651 | 96 | -> | Minus |
2L | 13209660..13209845 | 335..520 | 100 | -> | Minus |
2L | 13209911..13210228 | 17..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:41 Download gff for
BS16512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13209470..13209599 | 521..651 | 96 | -> | Minus |
arm_2L | 13209660..13209845 | 335..520 | 100 | -> | Minus |
arm_2L | 13209911..13210228 | 17..334 | 100 | | Minus |
BS16512.5prime Sequence
651 bp (651 high quality bases) assembled on 2007-05-15
> BS16512.5prime
GAAGTTATCAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGA
CCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGT
GATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGC
CTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGA
AACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAAC
TCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCT
CAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCT
ACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGT
CATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGC
CGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGA
TGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATAT
GAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGC
ACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCTAGAAGCTTTCTAGAC
C
BS16512.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5547-PB | 1182 | Pect-RB | 560..1182 | 15..637 | 3115 | 100 | Plus |
CG5547-PD | 1146 | Pect-RD | 524..1146 | 15..637 | 3115 | 100 | Plus |
CG5547-PA | 621 | Pect-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
CG5547-PC | 1125 | Pect-RC | 512..1125 | 24..637 | 3070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-RD | 2174 | CG5547-RD | 952..1574 | 15..637 | 3115 | 100 | Plus |
Pect-RB | 2210 | CG5547-RB | 988..1610 | 15..637 | 3115 | 100 | Plus |
Pect-RC | 2153 | CG5547-RC | 940..1553 | 24..637 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13209909..13210228 | 318..637 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 13209660..13209845 | 134..319 | 930 | 100 | Plus |
2L | 23513712 | 2L | 13209481..13209601 | 15..135 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:51:51 has no hits.
BS16512.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:39 Download gff for
BS16512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5547-PD | 511..1146 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:14 Download gff for
BS16512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 977..1610 | 3..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:57 Download gff for
BS16512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 977..1610 | 3..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:57 Download gff for
BS16512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13209470..13209599 | 3..133 | 96 | -> | Plus |
2L | 13209660..13209845 | 134..319 | 100 | -> | Plus |
2L | 13209911..13210228 | 320..637 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:14 Download gff for
BS16512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13209470..13209599 | 3..133 | 96 | -> | Plus |
arm_2L | 13209660..13209845 | 134..319 | 100 | -> | Plus |
arm_2L | 13209911..13210228 | 320..637 | 100 | | Plus |
BS16512.complete Sequence
653 bp assembled on 2007-05-07
GenBank Submission: FJ638154
> BS16512.complete
GAAGTTATCAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGA
CCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGT
GATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGC
CTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGA
AACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAAC
TCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCT
CAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCT
ACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGT
CATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGC
CGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGA
TGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATAT
GAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGC
ACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCTAGAAGCTTTCTAGAC
CAT
BS16512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-RD | 1146 | CG5547-PD | 524..1146 | 15..637 | 3115 | 100 | Plus |
Pect-RB | 1182 | CG5547-PB | 560..1182 | 15..637 | 3115 | 100 | Plus |
Pect-RC | 1125 | CG5547-PC | 512..1125 | 24..637 | 3070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-RD | 2174 | CG5547-RD | 952..1574 | 15..637 | 3115 | 100 | Plus |
Pect-RB | 2210 | CG5547-RB | 988..1610 | 15..637 | 3115 | 100 | Plus |
Pect-RC | 2153 | CG5547-RC | 940..1553 | 24..637 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13209909..13210228 | 318..637 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 13209660..13209845 | 134..319 | 930 | 100 | Plus |
2L | 23513712 | 2L | 13209481..13209601 | 15..135 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:19:06 has no hits.
BS16512.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:01 Download gff for
BS16512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RD | 511..1146 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:12 Download gff for
BS16512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RA | 205..838 | 3..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:26 Download gff for
BS16512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 990..1610 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:01 Download gff for
BS16512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RA | 205..838 | 3..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:40 Download gff for
BS16512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 990..1610 | 17..637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:40 Download gff for
BS16512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13209483..13209599 | 17..133 | 100 | -> | Plus |
2L | 13209660..13209845 | 134..319 | 100 | -> | Plus |
2L | 13209911..13210228 | 320..637 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:26 Download gff for
BS16512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13209483..13209599 | 17..133 | 100 | -> | Plus |
arm_2L | 13209660..13209845 | 134..319 | 100 | -> | Plus |
arm_2L | 13209911..13210228 | 320..637 | 100 | | Plus |
BS16512.pep Sequence
Translation from 16 to 636
> BS16512.pep
MGQDSAAKSPWTGCSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFH
VGHLDFLEKAKKLGDYLIVGLHTDPVVNSYKGSNYPIMNLHERVLSVLAC
KFVNEVVIGAPYCVTEELLEHFKIDVVCHGRTPIALENGKIDPYAVPKTR
AIFELIDSGNEMTTERIVERIISHRLEYERRNQAKEKKEIEAFEALQRQK
QTQKAG*
BS16512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-PD | 381 | CG5547-PD | 176..381 | 1..206 | 1077 | 100 | Plus |
Pect-PB | 393 | CG5547-PB | 188..393 | 1..206 | 1077 | 100 | Plus |
Pect-PC | 374 | CG5547-PC | 171..374 | 3..206 | 1063 | 99.5 | Plus |
Pect-PE | 371 | CG5547-PE | 169..371 | 4..206 | 1048 | 98.5 | Plus |
Cct2-PA | 381 | CG18330-PA | 81..225 | 40..185 | 210 | 37.8 | Plus |
Pect-PE | 371 | CG5547-PE | 20..172 | 37..192 | 209 | 33.3 | Plus |
Pect-PB | 393 | CG5547-PB | 20..178 | 37..199 | 207 | 33.1 | Plus |
Pect-PD | 381 | CG5547-PD | 20..171 | 37..191 | 205 | 32.9 | Plus |
Pect-PC | 374 | CG5547-PC | 20..171 | 37..191 | 205 | 32.9 | Plus |