Clone BS16512 Report

Search the DGRC for BS16512

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptPect-RA
Protein status:BS16512.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16512.3prime Sequence

651 bp (651 high quality bases) assembled on 2007-05-15

> BS16512.3prime
ATGGTCTAGAAAGCTTCTAGCCGGCCTTTTGGGTCTGTTTTTGGCGTTGA
AGTGCCTCAAAGGCTTCGATTTCCTTCTTTTCTTTGGCCTGATTGCGACG
CTCATATTCCAGTCGGTGCGAGATGATGCGCTCCACGATGCGCTCCGTGG
TCATCTCGTTGCCGGAATCGATCAGCTCAAAGATGGCTCGCGTCTTGGGA
ACGGCATATGGATCGATCTTGCCATTCTCAAGCGCAATGGGTGTGCGTCC
ATGACAGACAACATCGATTTTGAAGTGCTCAAGCAGCTCTTCAGTGACAC
AGTAGGGAGCTCCGATTACTACCTCATTGACAAACTTGCAGGCCAAAACA
CTGAGCACGCGCTCGTGCAGATTCATAATGGGATAGTTGCTGCCCTTGTA
GGAGTTCACCACGGGATCTGTGTGCAGGCCAACAATCAGATAGTCACCCA
GTTTCTTAGCCTTTTCCAGAAAGTCCAGGTGACCCACATGGAAGAGATCG
AAGGCGCCAGCCACATAAACAATCTTATCGCCGGGATTCGGTGACTTTCC
ATCACTGAACTGTATGATCTTTTGGGTAGTCGGCAAGAACTGACTACAAC
CGGTCCACGGACTTTTGGCTGCCGAATCTTGACCCATGTCGACTGATAAC
T

BS16512.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5547-PB 1182 Pect-RB 560..1182 639..17 3115 100 Minus
CG5547-PD 1146 Pect-RD 524..1146 639..17 3115 100 Minus
CG5547-PA 621 Pect-RA 1..621 637..17 3105 100 Minus
CG5547-PC 1125 Pect-RC 512..1125 630..17 3070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RD 2174 CG5547-RD 952..1574 639..17 3115 100 Minus
Pect-RB 2210 CG5547-RB 988..1610 639..17 3115 100 Minus
Pect-RC 2153 CG5547-RC 940..1553 630..17 3070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13209909..13210228 336..17 1600 100 Minus
2L 23513712 2L 13209660..13209845 520..335 930 100 Minus
2L 23513712 2L 13209481..13209601 639..519 605 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:52:21 has no hits.

BS16512.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:13 Download gff for BS16512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5547-PD 513..1146 17..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:41 Download gff for BS16512.3prime
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 977..1610 17..651 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:32 Download gff for BS16512.3prime
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 977..1610 17..651 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:32 Download gff for BS16512.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13209470..13209599 521..651 96 -> Minus
2L 13209660..13209845 335..520 100 -> Minus
2L 13209911..13210228 17..334 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:41 Download gff for BS16512.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13209470..13209599 521..651 96 -> Minus
arm_2L 13209660..13209845 335..520 100 -> Minus
arm_2L 13209911..13210228 17..334 100   Minus

BS16512.5prime Sequence

651 bp (651 high quality bases) assembled on 2007-05-15

> BS16512.5prime
GAAGTTATCAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGA
CCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGT
GATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGC
CTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGA
AACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAAC
TCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCT
CAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCT
ACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGT
CATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGC
CGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGA
TGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATAT
GAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGC
ACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCTAGAAGCTTTCTAGAC
C

BS16512.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5547-PB 1182 Pect-RB 560..1182 15..637 3115 100 Plus
CG5547-PD 1146 Pect-RD 524..1146 15..637 3115 100 Plus
CG5547-PA 621 Pect-RA 1..621 17..637 3105 100 Plus
CG5547-PC 1125 Pect-RC 512..1125 24..637 3070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RD 2174 CG5547-RD 952..1574 15..637 3115 100 Plus
Pect-RB 2210 CG5547-RB 988..1610 15..637 3115 100 Plus
Pect-RC 2153 CG5547-RC 940..1553 24..637 3070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13209909..13210228 318..637 1600 100 Plus
2L 23513712 2L 13209660..13209845 134..319 930 100 Plus
2L 23513712 2L 13209481..13209601 15..135 605 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:51:51 has no hits.

BS16512.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:39 Download gff for BS16512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5547-PD 511..1146 1..637 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:14 Download gff for BS16512.5prime
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 977..1610 3..637 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:57 Download gff for BS16512.5prime
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 977..1610 3..637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:57 Download gff for BS16512.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13209470..13209599 3..133 96 -> Plus
2L 13209660..13209845 134..319 100 -> Plus
2L 13209911..13210228 320..637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:14 Download gff for BS16512.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13209470..13209599 3..133 96 -> Plus
arm_2L 13209660..13209845 134..319 100 -> Plus
arm_2L 13209911..13210228 320..637 100   Plus

BS16512.complete Sequence

653 bp assembled on 2007-05-07

GenBank Submission: FJ638154

> BS16512.complete
GAAGTTATCAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGA
CCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGT
GATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGC
CTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGA
AACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAAC
TCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCT
CAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCT
ACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGT
CATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGC
CGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGA
TGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATAT
GAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGC
ACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCTAGAAGCTTTCTAGAC
CAT

BS16512.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RD 1146 CG5547-PD 524..1146 15..637 3115 100 Plus
Pect-RB 1182 CG5547-PB 560..1182 15..637 3115 100 Plus
Pect-RC 1125 CG5547-PC 512..1125 24..637 3070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RD 2174 CG5547-RD 952..1574 15..637 3115 100 Plus
Pect-RB 2210 CG5547-RB 988..1610 15..637 3115 100 Plus
Pect-RC 2153 CG5547-RC 940..1553 24..637 3070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13209909..13210228 318..637 1600 100 Plus
2L 23513712 2L 13209660..13209845 134..319 930 100 Plus
2L 23513712 2L 13209481..13209601 15..135 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:19:06 has no hits.

BS16512.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:01 Download gff for BS16512.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RD 511..1146 1..637 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:12 Download gff for BS16512.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RA 205..838 3..637 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:26 Download gff for BS16512.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 990..1610 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:01 Download gff for BS16512.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RA 205..838 3..637 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:40 Download gff for BS16512.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 990..1610 17..637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:40 Download gff for BS16512.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13209483..13209599 17..133 100 -> Plus
2L 13209660..13209845 134..319 100 -> Plus
2L 13209911..13210228 320..637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:26 Download gff for BS16512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13209483..13209599 17..133 100 -> Plus
arm_2L 13209660..13209845 134..319 100 -> Plus
arm_2L 13209911..13210228 320..637 100   Plus

BS16512.pep Sequence

Translation from 16 to 636

> BS16512.pep
MGQDSAAKSPWTGCSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFH
VGHLDFLEKAKKLGDYLIVGLHTDPVVNSYKGSNYPIMNLHERVLSVLAC
KFVNEVVIGAPYCVTEELLEHFKIDVVCHGRTPIALENGKIDPYAVPKTR
AIFELIDSGNEMTTERIVERIISHRLEYERRNQAKEKKEIEAFEALQRQK
QTQKAG*

BS16512.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-PD 381 CG5547-PD 176..381 1..206 1077 100 Plus
Pect-PB 393 CG5547-PB 188..393 1..206 1077 100 Plus
Pect-PC 374 CG5547-PC 171..374 3..206 1063 99.5 Plus
Pect-PE 371 CG5547-PE 169..371 4..206 1048 98.5 Plus
Cct2-PA 381 CG18330-PA 81..225 40..185 210 37.8 Plus
Pect-PE 371 CG5547-PE 20..172 37..192 209 33.3 Plus
Pect-PB 393 CG5547-PB 20..178 37..199 207 33.1 Plus
Pect-PD 381 CG5547-PD 20..171 37..191 205 32.9 Plus
Pect-PC 374 CG5547-PC 20..171 37..191 205 32.9 Plus