Clone BS16516 Report

Search the DGRC for BS16516

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptVap-33B-RA
Protein status:BS16516.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16516.3prime Sequence

735 bp (735 high quality bases) assembled on 2007-05-15

> BS16516.3prime
ATGGTCTAGAAAGCTTTTATTTGCGCTTAGCGCACGAATACGCCGTTGCC
TTGGGACAGGTAGCGGCGTGCTGGCCGAGCTGCTGGTACATCAGAAAGCC
GAAGCCGGCAAACAACAGGAACAACAGCGCCAGCGTCACGTATTGCAGGT
TCTGGGTGAATGCCAACTGACGCTCCATTGCCGTAGCTGGATCTACGCCA
GCACCGGACTTCTTGCTGCAATCCACGCTGGCCTTACTGGACTTGCTTGC
GCAATCTAGCTGCGCTTTTGATTTGTTCTCATCGAAGCGGCAGACCAGTC
GATGCTGCTCCACATCCGCAGATGTGGGGGATTTGCTCCGCCACAGCTCG
GTCACATCGGCGCCACCGCATTCACCGCCTGGCGCGACCATAGCCATCAC
CAGGAACTTATCCTTGCTGTCGTCACTAAGCTTGTGCTCCGACTTCAACC
ATATGTTGATGGTGGCCTCCTGATTGGGCTGGATGATGCCGCAACGTGGT
CGCACACGGAACTTCTCCGGCGATGTGGTTTGGATCTTGTACGTCACTGC
CGAGGTGGCAATAGACTTGATGGTCATCGTGGCTTCCGCATTCTTGGAAT
TGAAGTTGACAAAATCCTTGGGATTGATGTGCAACATGCCCTCGGATGGA
GTGTGCATCTTGTTGATGTTGGTCTCCTTGAGCACCATGGGAGCGGAATC
GACAAAGGTGACCCTGGGCATGTCGACTGATAACT

BS16516.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PA 705 CG33523-RA 1..705 721..17 3525 100 Minus
CG33523-PD 1497 CG33523-RD 801..1497 713..17 3485 100 Minus
CG33523-PC 723 CG33523-RC 28..723 712..17 3480 100 Minus
CG33523-PB 621 CG33523-RB 1..621 637..17 3105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RA 1508 CG33523-RA 188..892 721..17 3525 100 Minus
Vap-33B-RE 2672 CG33523-RE 1141..1838 714..17 3490 100 Minus
Vap-33B-RF 2574 CG33523-RF 1044..1740 713..17 3485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 537..199 1695 100 Minus
3L 28110227 3L 5929104..5929286 199..17 915 100 Minus
3L 28110227 3L 5928536..5928640 640..536 525 100 Minus
3L 28110227 3L 5928223..5928297 713..639 375 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:39:40 has no hits.

BS16516.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:19 Download gff for BS16516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-PA 1..705 17..721 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:41 Download gff for BS16516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 181..897 10..729 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:37 Download gff for BS16516.3prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RA 181..897 10..729 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:37 Download gff for BS16516.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5928215..5928296 640..722 95 -> Minus
3L 5928537..5928640 536..639 100 -> Minus
3L 5928704..5929039 200..535 100 -> Minus
3L 5929104..5929291 10..199 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:41 Download gff for BS16516.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5921315..5921396 640..722 95 -> Minus
arm_3L 5921637..5921740 536..639 100 -> Minus
arm_3L 5921804..5922139 200..535 100 -> Minus
arm_3L 5922204..5922391 10..199 98   Minus

BS16516.5prime Sequence

735 bp (735 high quality bases) assembled on 2007-05-15

> BS16516.5prime
GAAGTTATCAGTCGACATGCCCAGGGTCACCTTTGTCGATTCCGCTCCCA
TGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCCGAGGGC
ATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGC
GGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACA
AGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGCGGC
ATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTCGGA
GCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTATGG
TCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGGCGG
AGCAAATCCCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCG
CTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCA
GTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCA
GCTACGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATACGT
GACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGT
ACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCGTAT
TCGTGCGCTAAGCGCAAATAAAAGCTTTCTAGACC

BS16516.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PA 705 CG33523-RA 1..705 17..721 3525 100 Plus
CG33523-PD 1497 CG33523-RD 801..1497 25..721 3485 100 Plus
CG33523-PC 723 CG33523-RC 28..723 26..721 3480 100 Plus
CG33523-PB 621 CG33523-RB 1..621 101..721 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RA 1508 CG33523-RA 188..892 17..721 3525 100 Plus
Vap-33B-RE 2672 CG33523-RE 1141..1838 24..721 3490 100 Plus
Vap-33B-RF 2574 CG33523-RF 1044..1740 25..721 3485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 201..539 1695 100 Plus
3L 28110227 3L 5929104..5929286 539..721 915 100 Plus
3L 28110227 3L 5928536..5928640 98..202 525 100 Plus
3L 28110227 3L 5928223..5928297 25..99 375 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:32:16 has no hits.

BS16516.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:44 Download gff for BS16516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:22 Download gff for BS16516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 181..897 9..728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:32 Download gff for BS16516.5prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RA 181..897 9..728 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:32 Download gff for BS16516.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5928215..5928296 16..98 95 -> Plus
3L 5928537..5928640 99..202 100 -> Plus
3L 5928704..5929039 203..538 100 -> Plus
3L 5929104..5929291 539..728 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:22 Download gff for BS16516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5921315..5921396 16..98 95 -> Plus
arm_3L 5921637..5921740 99..202 100 -> Plus
arm_3L 5921804..5922139 203..538 100 -> Plus
arm_3L 5922204..5922391 539..728 98   Plus

BS16516.complete Sequence

737 bp assembled on 2007-05-07

GenBank Submission: FJ638155

> BS16516.complete
GAAGTTATCAGTCGACATGCCCAGGGTCACCTTTGTCGATTCCGCTCCCA
TGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCCGAGGGC
ATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGC
GGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACA
AGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGCGGC
ATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTCGGA
GCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTATGG
TCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGGCGG
AGCAAATCCCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCG
CTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCA
GTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCA
GCTACGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATACGT
GACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGT
ACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCGTAT
TCGTGCGCTAAGCGCAAATAAAAGCTTTCTAGACCAT

BS16516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RA 705 CG33523-PA 1..705 17..721 3525 100 Plus
Vap-33B-RF 1965 CG33523-PF 801..1497 25..721 3485 100 Plus
Vap-33B-RD 1497 CG33523-PD 801..1497 25..721 3485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RA 1508 CG33523-RA 188..892 17..721 3525 100 Plus
Vap-33B-RE 2672 CG33523-RE 1141..1838 24..721 3490 100 Plus
Vap-33B-RF 2574 CG33523-RF 1044..1740 25..721 3485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 201..539 1695 100 Plus
3L 28110227 3L 5929104..5929286 539..721 915 100 Plus
3L 28110227 3L 5928536..5928640 98..202 525 100 Plus
3L 28110227 3L 5928223..5928297 25..99 375 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:53:46 has no hits.

BS16516.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:02 Download gff for BS16516.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:13 Download gff for BS16516.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 181..897 9..728 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:44 Download gff for BS16516.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 188..890 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:02 Download gff for BS16516.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RA 181..897 9..728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:03 Download gff for BS16516.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RA 188..890 17..719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:03 Download gff for BS16516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5928704..5929039 203..538 100 -> Plus
3L 5929104..5929284 539..719 100   Plus
3L 5928216..5928296 17..98 95 -> Plus
3L 5928537..5928640 99..202 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:44 Download gff for BS16516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5921316..5921396 17..98 95 -> Plus
arm_3L 5921637..5921740 99..202 100 -> Plus
arm_3L 5921804..5922139 203..538 100 -> Plus
arm_3L 5922204..5922384 539..719 100   Plus

BS16516.pep Sequence

Translation from 16 to 720

> BS16516.pep
MPRVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKNAEATMT
IKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKSEHKLSD
DSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVCRFDENK
SKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQYVTLALL
FLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*

BS16516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-PA 234 CG33523-PA 1..234 1..234 1214 100 Plus
Vap-33B-PD 498 CG33523-PD 267..498 3..234 1199 99.6 Plus
Vap-33B-PF 654 CG33523-PF 267..498 3..234 1199 99.6 Plus
Vap-33B-PC 240 CG33523-PC 10..240 4..234 1197 100 Plus
Vap-33B-PB 206 CG33523-PB 1..206 29..234 1068 100 Plus