Clone Sequence Records
BS16516.3prime Sequence
735 bp (735 high quality bases) assembled on 2007-05-15
> BS16516.3prime
ATGGTCTAGAAAGCTTTTATTTGCGCTTAGCGCACGAATACGCCGTTGCC
TTGGGACAGGTAGCGGCGTGCTGGCCGAGCTGCTGGTACATCAGAAAGCC
GAAGCCGGCAAACAACAGGAACAACAGCGCCAGCGTCACGTATTGCAGGT
TCTGGGTGAATGCCAACTGACGCTCCATTGCCGTAGCTGGATCTACGCCA
GCACCGGACTTCTTGCTGCAATCCACGCTGGCCTTACTGGACTTGCTTGC
GCAATCTAGCTGCGCTTTTGATTTGTTCTCATCGAAGCGGCAGACCAGTC
GATGCTGCTCCACATCCGCAGATGTGGGGGATTTGCTCCGCCACAGCTCG
GTCACATCGGCGCCACCGCATTCACCGCCTGGCGCGACCATAGCCATCAC
CAGGAACTTATCCTTGCTGTCGTCACTAAGCTTGTGCTCCGACTTCAACC
ATATGTTGATGGTGGCCTCCTGATTGGGCTGGATGATGCCGCAACGTGGT
CGCACACGGAACTTCTCCGGCGATGTGGTTTGGATCTTGTACGTCACTGC
CGAGGTGGCAATAGACTTGATGGTCATCGTGGCTTCCGCATTCTTGGAAT
TGAAGTTGACAAAATCCTTGGGATTGATGTGCAACATGCCCTCGGATGGA
GTGTGCATCTTGTTGATGTTGGTCTCCTTGAGCACCATGGGAGCGGAATC
GACAAAGGTGACCCTGGGCATGTCGACTGATAACT
BS16516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33523-PA | 705 | CG33523-RA | 1..705 | 721..17 | 3525 | 100 | Minus |
CG33523-PD | 1497 | CG33523-RD | 801..1497 | 713..17 | 3485 | 100 | Minus |
CG33523-PC | 723 | CG33523-RC | 28..723 | 712..17 | 3480 | 100 | Minus |
CG33523-PB | 621 | CG33523-RB | 1..621 | 637..17 | 3105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RA | 1508 | CG33523-RA | 188..892 | 721..17 | 3525 | 100 | Minus |
Vap-33B-RE | 2672 | CG33523-RE | 1141..1838 | 714..17 | 3490 | 100 | Minus |
Vap-33B-RF | 2574 | CG33523-RF | 1044..1740 | 713..17 | 3485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5928702..5929040 | 537..199 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 5929104..5929286 | 199..17 | 915 | 100 | Minus |
3L | 28110227 | 3L | 5928536..5928640 | 640..536 | 525 | 100 | Minus |
3L | 28110227 | 3L | 5928223..5928297 | 713..639 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:39:40 has no hits.
BS16516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:19 Download gff for
BS16516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-PA | 1..705 | 17..721 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:41 Download gff for
BS16516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RA | 181..897 | 10..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:37 Download gff for
BS16516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RA | 181..897 | 10..729 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:37 Download gff for
BS16516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5928215..5928296 | 640..722 | 95 | -> | Minus |
3L | 5928537..5928640 | 536..639 | 100 | -> | Minus |
3L | 5928704..5929039 | 200..535 | 100 | -> | Minus |
3L | 5929104..5929291 | 10..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:41 Download gff for
BS16516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5921315..5921396 | 640..722 | 95 | -> | Minus |
arm_3L | 5921637..5921740 | 536..639 | 100 | -> | Minus |
arm_3L | 5921804..5922139 | 200..535 | 100 | -> | Minus |
arm_3L | 5922204..5922391 | 10..199 | 98 | | Minus |
BS16516.5prime Sequence
735 bp (735 high quality bases) assembled on 2007-05-15
> BS16516.5prime
GAAGTTATCAGTCGACATGCCCAGGGTCACCTTTGTCGATTCCGCTCCCA
TGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCCGAGGGC
ATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGC
GGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACA
AGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGCGGC
ATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTCGGA
GCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTATGG
TCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGGCGG
AGCAAATCCCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCG
CTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCA
GTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCA
GCTACGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATACGT
GACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGT
ACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCGTAT
TCGTGCGCTAAGCGCAAATAAAAGCTTTCTAGACC
BS16516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33523-PA | 705 | CG33523-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
CG33523-PD | 1497 | CG33523-RD | 801..1497 | 25..721 | 3485 | 100 | Plus |
CG33523-PC | 723 | CG33523-RC | 28..723 | 26..721 | 3480 | 100 | Plus |
CG33523-PB | 621 | CG33523-RB | 1..621 | 101..721 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RA | 1508 | CG33523-RA | 188..892 | 17..721 | 3525 | 100 | Plus |
Vap-33B-RE | 2672 | CG33523-RE | 1141..1838 | 24..721 | 3490 | 100 | Plus |
Vap-33B-RF | 2574 | CG33523-RF | 1044..1740 | 25..721 | 3485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5928702..5929040 | 201..539 | 1695 | 100 | Plus |
3L | 28110227 | 3L | 5929104..5929286 | 539..721 | 915 | 100 | Plus |
3L | 28110227 | 3L | 5928536..5928640 | 98..202 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5928223..5928297 | 25..99 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:32:16 has no hits.
BS16516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:44 Download gff for
BS16516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:22 Download gff for
BS16516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RA | 181..897 | 9..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:32 Download gff for
BS16516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RA | 181..897 | 9..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:32 Download gff for
BS16516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5928215..5928296 | 16..98 | 95 | -> | Plus |
3L | 5928537..5928640 | 99..202 | 100 | -> | Plus |
3L | 5928704..5929039 | 203..538 | 100 | -> | Plus |
3L | 5929104..5929291 | 539..728 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:22 Download gff for
BS16516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5921315..5921396 | 16..98 | 95 | -> | Plus |
arm_3L | 5921637..5921740 | 99..202 | 100 | -> | Plus |
arm_3L | 5921804..5922139 | 203..538 | 100 | -> | Plus |
arm_3L | 5922204..5922391 | 539..728 | 98 | | Plus |
BS16516.complete Sequence
737 bp assembled on 2007-05-07
GenBank Submission: FJ638155
> BS16516.complete
GAAGTTATCAGTCGACATGCCCAGGGTCACCTTTGTCGATTCCGCTCCCA
TGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCCGAGGGC
ATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGC
GGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACA
AGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGCGGC
ATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTCGGA
GCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTATGG
TCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGGCGG
AGCAAATCCCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCG
CTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCA
GTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCA
GCTACGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATACGT
GACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGT
ACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCGTAT
TCGTGCGCTAAGCGCAAATAAAAGCTTTCTAGACCAT
BS16516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RA | 705 | CG33523-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Vap-33B-RF | 1965 | CG33523-PF | 801..1497 | 25..721 | 3485 | 100 | Plus |
Vap-33B-RD | 1497 | CG33523-PD | 801..1497 | 25..721 | 3485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RA | 1508 | CG33523-RA | 188..892 | 17..721 | 3525 | 100 | Plus |
Vap-33B-RE | 2672 | CG33523-RE | 1141..1838 | 24..721 | 3490 | 100 | Plus |
Vap-33B-RF | 2574 | CG33523-RF | 1044..1740 | 25..721 | 3485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5928702..5929040 | 201..539 | 1695 | 100 | Plus |
3L | 28110227 | 3L | 5929104..5929286 | 539..721 | 915 | 100 | Plus |
3L | 28110227 | 3L | 5928536..5928640 | 98..202 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5928223..5928297 | 25..99 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:53:46 has no hits.
BS16516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:02 Download gff for
BS16516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:13 Download gff for
BS16516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RA | 181..897 | 9..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:44 Download gff for
BS16516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RA | 188..890 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:02 Download gff for
BS16516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RA | 181..897 | 9..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:03 Download gff for
BS16516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RA | 188..890 | 17..719 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:03 Download gff for
BS16516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5928704..5929039 | 203..538 | 100 | -> | Plus |
3L | 5929104..5929284 | 539..719 | 100 | | Plus |
3L | 5928216..5928296 | 17..98 | 95 | -> | Plus |
3L | 5928537..5928640 | 99..202 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:44 Download gff for
BS16516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5921316..5921396 | 17..98 | 95 | -> | Plus |
arm_3L | 5921637..5921740 | 99..202 | 100 | -> | Plus |
arm_3L | 5921804..5922139 | 203..538 | 100 | -> | Plus |
arm_3L | 5922204..5922384 | 539..719 | 100 | | Plus |
BS16516.pep Sequence
Translation from 16 to 720
> BS16516.pep
MPRVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKNAEATMT
IKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKSEHKLSD
DSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVCRFDENK
SKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQYVTLALL
FLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*
BS16516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-PA | 234 | CG33523-PA | 1..234 | 1..234 | 1214 | 100 | Plus |
Vap-33B-PD | 498 | CG33523-PD | 267..498 | 3..234 | 1199 | 99.6 | Plus |
Vap-33B-PF | 654 | CG33523-PF | 267..498 | 3..234 | 1199 | 99.6 | Plus |
Vap-33B-PC | 240 | CG33523-PC | 10..240 | 4..234 | 1197 | 100 | Plus |
Vap-33B-PB | 206 | CG33523-PB | 1..206 | 29..234 | 1068 | 100 | Plus |