Clone Sequence Records
BS16517.5prime Sequence
648 bp (648 high quality bases) assembled on 2007-05-15
> BS16517.5prime
GAAGTTATCAGTCGACATGCAGAACAATCCCAGCCCACAGCTACCCTGCA
AGGGTATACTAAAGACTTCGCGTAGCTTCGACAAGTCGGGAGCCAGTTTT
CGCAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATCC
GGCCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCGT
ACAACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGAG
TTGCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAGA
GAGCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAAG
AGGAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTAT
CGCGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGGA
CGACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGCT
CGTCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAAA
CGGTCGAGCTCTCAGGCTGACTCCACCACATCCCCGTCTACCAGCGCCGG
CCAGAACATGGACCTGGAGCCATCGAATAACTAGAAGCTTTCTAGACC
BS16517.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10574-PA | 618 | I-2-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-RB | 1574 | CG10574-RB | 316..937 | 17..638 | 3110 | 100 | Plus |
I-2-RA | 1561 | CG10574-RA | 303..924 | 17..638 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9835004..9835282 | 638..360 | 1395 | 100 | Minus |
3L | 28110227 | 3L | 9835813..9835982 | 264..95 | 850 | 100 | Minus |
3L | 28110227 | 3L | 9835339..9835433 | 359..265 | 475 | 100 | Minus |
3L | 28110227 | 3L | 9836049..9836128 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 565..601 | 438..473 | 119 | 83.8 | Plus |
BS16517.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:55 Download gff for
BS16517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10574-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:55 Download gff for
BS16517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 299..924 | 9..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:20 Download gff for
BS16517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 299..924 | 9..638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:20 Download gff for
BS16517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9835004..9835282 | 360..638 | 100 | <- | Minus |
3L | 9835339..9835433 | 265..359 | 100 | <- | Minus |
3L | 9835813..9835980 | 97..264 | 100 | <- | Minus |
3L | 9836049..9836132 | 9..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:55 Download gff for
BS16517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9828104..9828382 | 360..638 | 100 | <- | Minus |
arm_3L | 9828439..9828533 | 265..359 | 100 | <- | Minus |
arm_3L | 9828913..9829080 | 97..264 | 100 | <- | Minus |
arm_3L | 9829149..9829232 | 9..96 | 95 | | Minus |
BS16517.3prime Sequence
648 bp (648 high quality bases) assembled on 2007-05-15
> BS16517.3prime
ATGGTCTAGAAAGCTTCTAGTTATTCGATGGCTCCAGGTCCATGTTCTGG
CCGGCGCTGGTAGACGGGGATGTGGTGGAGTCAGCCTGAGAGCTCGACCG
TTTGGTCGAACTGCTCGCGAAACGTCCGGAGCTGGAAGCGCCCTGTGACG
AGCCCGAGGGCCGGCTATCCGCACCCTTGTCCTCGTCGTCATCGTCGTCG
TCCTCCTCCTGGATCAGTTTTCGTGCCAGTTTGACGGCCTCAAACTCGCG
ATAGTGGGCCTTACGGCGTCGCTCGAATTCGCGCCGCCGTTGTCGCTCCT
CTTCGCTAAGGGGCTGGTCATCACCGGAGGAACCATCGTCCTCGATGCTC
TCTGTCGACGGCTGTGTGTTAGCCGCTATGCGGAGTTTCTCCACTAGCAA
CTCCGTGTCCAGCTCGTCCCTGTTCTCGTCGAAGCCCTCCGTGTAGTTGT
ACGGCGTTTTGGGCTCATCGATTTTCATGTGTCCGTAGTCCTTGTCGGCC
GGATGGAAGGTCTGCATCACGTTCAGCTCATCGAACTTGGCACTTTTGCG
AAAACTGGCTCCCGACTTGTCGAAGCTACGCGAAGTCTTTAGTATACCCT
TGCAGGGTAGCTGTGGGCTGGGATTGTTCTGCATGTCGACTGATAACT
BS16517.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10574-PA | 618 | I-2-RA | 1..618 | 634..17 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-RB | 1574 | CG10574-RB | 316..937 | 634..13 | 3110 | 100 | Minus |
I-2-RA | 1561 | CG10574-RA | 303..924 | 634..13 | 3110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9835004..9835282 | 13..291 | 1395 | 100 | Plus |
3L | 28110227 | 3L | 9835813..9835982 | 387..556 | 850 | 100 | Plus |
3L | 28110227 | 3L | 9835339..9835433 | 292..386 | 475 | 100 | Plus |
3L | 28110227 | 3L | 9836049..9836128 | 555..634 | 400 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 05:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 565..601 | 213..178 | 119 | 83.8 | Minus |
BS16517.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:28 Download gff for
BS16517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10574-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:04 Download gff for
BS16517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 299..924 | 13..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:15 Download gff for
BS16517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 299..924 | 13..642 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:15 Download gff for
BS16517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9835004..9835282 | 13..291 | 100 | <- | Plus |
3L | 9835339..9835433 | 292..386 | 100 | <- | Plus |
3L | 9835813..9835980 | 387..554 | 100 | <- | Plus |
3L | 9836049..9836132 | 555..642 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:04 Download gff for
BS16517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9828104..9828382 | 13..291 | 100 | <- | Plus |
arm_3L | 9828439..9828533 | 292..386 | 100 | <- | Plus |
arm_3L | 9828913..9829080 | 387..554 | 100 | <- | Plus |
arm_3L | 9829149..9829232 | 555..642 | 95 | | Plus |
BS16517.complete Sequence
650 bp assembled on 2007-05-07
GenBank Submission: FJ638156
> BS16517.complete
GAAGTTATCAGTCGACATGCAGAACAATCCCAGCCCACAGCTACCCTGCA
AGGGTATACTAAAGACTTCGCGTAGCTTCGACAAGTCGGGAGCCAGTTTT
CGCAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATCC
GGCCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCGT
ACAACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGAG
TTGCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAGA
GAGCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAAG
AGGAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTAT
CGCGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGGA
CGACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGCT
CGTCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAAA
CGGTCGAGCTCTCAGGCTGACTCCACCACATCCCCGTCTACCAGCGCCGG
CCAGAACATGGACCTGGAGCCATCGAATAACTAGAAGCTTTCTAGACCAT
BS16517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-RB | 933 | CG10574-PB | 316..933 | 17..634 | 3090 | 100 | Plus |
I-2-RA | 618 | CG10574-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-RB | 1574 | CG10574-RB | 316..937 | 17..638 | 3110 | 100 | Plus |
I-2-RA | 1561 | CG10574-RA | 303..924 | 17..638 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9835004..9835282 | 638..360 | 1395 | 100 | Minus |
3L | 28110227 | 3L | 9835813..9835982 | 264..95 | 850 | 100 | Minus |
3L | 28110227 | 3L | 9835339..9835433 | 359..265 | 475 | 100 | Minus |
3L | 28110227 | 3L | 9836049..9836128 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 565..601 | 438..473 | 119 | 83.8 | Plus |
BS16517.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:03 Download gff for
BS16517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RB | 312..933 | 9..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:15 Download gff for
BS16517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RB | 312..937 | 9..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:36 Download gff for
BS16517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 303..920 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:04 Download gff for
BS16517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RB | 312..937 | 9..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:12 Download gff for
BS16517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 303..920 | 17..634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:12 Download gff for
BS16517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9835008..9835282 | 360..634 | 100 | <- | Minus |
3L | 9835339..9835433 | 265..359 | 100 | <- | Minus |
3L | 9835813..9835980 | 97..264 | 100 | <- | Minus |
3L | 9836049..9836128 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:36 Download gff for
BS16517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9828108..9828382 | 360..634 | 100 | <- | Minus |
arm_3L | 9828439..9828533 | 265..359 | 100 | <- | Minus |
arm_3L | 9828913..9829080 | 97..264 | 100 | <- | Minus |
arm_3L | 9829149..9829228 | 17..96 | 100 | | Minus |
BS16517.pep Sequence
Translation from 16 to 633
> BS16517.pep
MQNNPSPQLPCKGILKTSRSFDKSGASFRKSAKFDELNVMQTFHPADKDY
GHMKIDEPKTPYNYTEGFDENRDELDTELLVEKLRIAANTQPSTESIEDD
GSSGDDQPLSEEERQRRREFERRRKAHYREFEAVKLARKLIQEEDDDDDD
EDKGADSRPSGSSQGASSSGRFASSSTKRSSSQADSTTSPSTSAGQNMDL
EPSNN*
BS16517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-PA | 205 | CG10574-PA | 1..205 | 1..205 | 1057 | 100 | Plus |
I-2-PB | 310 | CG10574-PB | 106..310 | 1..205 | 1057 | 100 | Plus |
CG6380-PB | 293 | CG6380-PB | 7..136 | 12..144 | 315 | 51.5 | Plus |
CG6380-PA | 293 | CG6380-PA | 7..136 | 12..144 | 315 | 51.5 | Plus |