Clone BS16517 Report

Search the DGRC for BS16517

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptI-2-RA
Protein status:BS16517.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16517.5prime Sequence

648 bp (648 high quality bases) assembled on 2007-05-15

> BS16517.5prime
GAAGTTATCAGTCGACATGCAGAACAATCCCAGCCCACAGCTACCCTGCA
AGGGTATACTAAAGACTTCGCGTAGCTTCGACAAGTCGGGAGCCAGTTTT
CGCAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATCC
GGCCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCGT
ACAACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGAG
TTGCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAGA
GAGCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAAG
AGGAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTAT
CGCGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGGA
CGACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGCT
CGTCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAAA
CGGTCGAGCTCTCAGGCTGACTCCACCACATCCCCGTCTACCAGCGCCGG
CCAGAACATGGACCTGGAGCCATCGAATAACTAGAAGCTTTCTAGACC

BS16517.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10574-PA 618 I-2-RA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-RB 1574 CG10574-RB 316..937 17..638 3110 100 Plus
I-2-RA 1561 CG10574-RA 303..924 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9835004..9835282 638..360 1395 100 Minus
3L 28110227 3L 9835813..9835982 264..95 850 100 Minus
3L 28110227 3L 9835339..9835433 359..265 475 100 Minus
3L 28110227 3L 9836049..9836128 96..17 400 100 Minus
Blast to na_te.dros performed 2015-02-11 04:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 565..601 438..473 119 83.8 Plus

BS16517.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:55 Download gff for BS16517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10574-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:55 Download gff for BS16517.5prime
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 299..924 9..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:20 Download gff for BS16517.5prime
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 299..924 9..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:20 Download gff for BS16517.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9835004..9835282 360..638 100 <- Minus
3L 9835339..9835433 265..359 100 <- Minus
3L 9835813..9835980 97..264 100 <- Minus
3L 9836049..9836132 9..96 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:55 Download gff for BS16517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9828104..9828382 360..638 100 <- Minus
arm_3L 9828439..9828533 265..359 100 <- Minus
arm_3L 9828913..9829080 97..264 100 <- Minus
arm_3L 9829149..9829232 9..96 95   Minus

BS16517.3prime Sequence

648 bp (648 high quality bases) assembled on 2007-05-15

> BS16517.3prime
ATGGTCTAGAAAGCTTCTAGTTATTCGATGGCTCCAGGTCCATGTTCTGG
CCGGCGCTGGTAGACGGGGATGTGGTGGAGTCAGCCTGAGAGCTCGACCG
TTTGGTCGAACTGCTCGCGAAACGTCCGGAGCTGGAAGCGCCCTGTGACG
AGCCCGAGGGCCGGCTATCCGCACCCTTGTCCTCGTCGTCATCGTCGTCG
TCCTCCTCCTGGATCAGTTTTCGTGCCAGTTTGACGGCCTCAAACTCGCG
ATAGTGGGCCTTACGGCGTCGCTCGAATTCGCGCCGCCGTTGTCGCTCCT
CTTCGCTAAGGGGCTGGTCATCACCGGAGGAACCATCGTCCTCGATGCTC
TCTGTCGACGGCTGTGTGTTAGCCGCTATGCGGAGTTTCTCCACTAGCAA
CTCCGTGTCCAGCTCGTCCCTGTTCTCGTCGAAGCCCTCCGTGTAGTTGT
ACGGCGTTTTGGGCTCATCGATTTTCATGTGTCCGTAGTCCTTGTCGGCC
GGATGGAAGGTCTGCATCACGTTCAGCTCATCGAACTTGGCACTTTTGCG
AAAACTGGCTCCCGACTTGTCGAAGCTACGCGAAGTCTTTAGTATACCCT
TGCAGGGTAGCTGTGGGCTGGGATTGTTCTGCATGTCGACTGATAACT

BS16517.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10574-PA 618 I-2-RA 1..618 634..17 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-RB 1574 CG10574-RB 316..937 634..13 3110 100 Minus
I-2-RA 1561 CG10574-RA 303..924 634..13 3110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9835004..9835282 13..291 1395 100 Plus
3L 28110227 3L 9835813..9835982 387..556 850 100 Plus
3L 28110227 3L 9835339..9835433 292..386 475 100 Plus
3L 28110227 3L 9836049..9836128 555..634 400 100 Plus
Blast to na_te.dros performed 2015-02-13 05:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 565..601 213..178 119 83.8 Minus

BS16517.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:28 Download gff for BS16517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10574-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:04 Download gff for BS16517.3prime
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 299..924 13..642 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:15 Download gff for BS16517.3prime
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 299..924 13..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:15 Download gff for BS16517.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9835004..9835282 13..291 100 <- Plus
3L 9835339..9835433 292..386 100 <- Plus
3L 9835813..9835980 387..554 100 <- Plus
3L 9836049..9836132 555..642 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:04 Download gff for BS16517.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9828104..9828382 13..291 100 <- Plus
arm_3L 9828439..9828533 292..386 100 <- Plus
arm_3L 9828913..9829080 387..554 100 <- Plus
arm_3L 9829149..9829232 555..642 95   Plus

BS16517.complete Sequence

650 bp assembled on 2007-05-07

GenBank Submission: FJ638156

> BS16517.complete
GAAGTTATCAGTCGACATGCAGAACAATCCCAGCCCACAGCTACCCTGCA
AGGGTATACTAAAGACTTCGCGTAGCTTCGACAAGTCGGGAGCCAGTTTT
CGCAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATCC
GGCCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCGT
ACAACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGAG
TTGCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAGA
GAGCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAAG
AGGAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTAT
CGCGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGGA
CGACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGCT
CGTCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAAA
CGGTCGAGCTCTCAGGCTGACTCCACCACATCCCCGTCTACCAGCGCCGG
CCAGAACATGGACCTGGAGCCATCGAATAACTAGAAGCTTTCTAGACCAT

BS16517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-RB 933 CG10574-PB 316..933 17..634 3090 100 Plus
I-2-RA 618 CG10574-PA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-RB 1574 CG10574-RB 316..937 17..638 3110 100 Plus
I-2-RA 1561 CG10574-RA 303..924 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9835004..9835282 638..360 1395 100 Minus
3L 28110227 3L 9835813..9835982 264..95 850 100 Minus
3L 28110227 3L 9835339..9835433 359..265 475 100 Minus
3L 28110227 3L 9836049..9836128 96..17 400 100 Minus
Blast to na_te.dros performed 2014-11-27 16:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 565..601 438..473 119 83.8 Plus

BS16517.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:03 Download gff for BS16517.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 312..933 9..634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:15 Download gff for BS16517.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 312..937 9..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:36 Download gff for BS16517.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 303..920 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:04 Download gff for BS16517.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 312..937 9..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:12 Download gff for BS16517.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 303..920 17..634 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:12 Download gff for BS16517.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9835008..9835282 360..634 100 <- Minus
3L 9835339..9835433 265..359 100 <- Minus
3L 9835813..9835980 97..264 100 <- Minus
3L 9836049..9836128 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:36 Download gff for BS16517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9828108..9828382 360..634 100 <- Minus
arm_3L 9828439..9828533 265..359 100 <- Minus
arm_3L 9828913..9829080 97..264 100 <- Minus
arm_3L 9829149..9829228 17..96 100   Minus

BS16517.pep Sequence

Translation from 16 to 633

> BS16517.pep
MQNNPSPQLPCKGILKTSRSFDKSGASFRKSAKFDELNVMQTFHPADKDY
GHMKIDEPKTPYNYTEGFDENRDELDTELLVEKLRIAANTQPSTESIEDD
GSSGDDQPLSEEERQRRREFERRRKAHYREFEAVKLARKLIQEEDDDDDD
EDKGADSRPSGSSQGASSSGRFASSSTKRSSSQADSTTSPSTSAGQNMDL
EPSNN*

BS16517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-PA 205 CG10574-PA 1..205 1..205 1057 100 Plus
I-2-PB 310 CG10574-PB 106..310 1..205 1057 100 Plus
CG6380-PB 293 CG6380-PB 7..136 12..144 315 51.5 Plus
CG6380-PA 293 CG6380-PA 7..136 12..144 315 51.5 Plus