Clone Sequence Records
BS16519.3prime Sequence
906 bp (756 high quality bases) assembled on 2007-05-15
> BS16519.3prime
ATGGTCTAGAAAGCTTTTAAGCGGATGCCAAGTGGATTTCCCGGATGAGT
CGGGAGACCAGTTCGCAGCAGGCCTTTTGCCTGTTCTTGGCCACAGCCAT
AACCTCATCGTGGTTGGCCTCATCGTCCTTCTTATCGCTGTACTCGGTGG
CGCACTTATTTGTGATGAGGCTGAAGGCGAATACCTTCATGTCGCAGTGC
CGTGCAGTGATGACCTCATGTACGGTGGACATGCCCACCGCATCCACGCC
CATCATGCGCAGGGCCTTCAGCTCGGCGATGGTCTCGTAGTTGGGACCAC
CCAGACAGGAGTATACGCCGACGTGAATGTTGGACTCTATGCCCATGGCC
TTGGCGATCTCGATGGCCTTGTTGATTAGGTCCTTGTTGTACGAGTTCAC
CAGGGCGGGAAAGCGGGGTCCGAAGCGTGGGTCATTGGGTCCCTGGAGCG
GAGAATTTCCGGCAAAGCCCAGCATGTTGACATGGTCATGCATCAGCATG
ATGTCGCCCACCGCGAACCGTGGATTGATTCCACCAGCCGCATTGGTGGC
GAACAGGTATTCCACACCGCACAGCTTCATCACGCGAACCGGCATTGAGC
ACTTGGCCAGCGGATAGCCCTCGTAGAAGTGGAACCTGCCCTGCATCGCC
ATCACAGTGGCGCCCTCGAGTGTGCCGACCACCAGTCGTCCGGCATGGCC
CTCAACTGTAGATACCGGGAAGTTGGGGATCTTCTCATACTCGAAGATCT
TCGGGTCCTGGATCATATCGGCCAATGAGCCTAGCCCAGAGCCGCAGATG
ATGCCGATCTTGGGGCGCATGCCGGACCCCTTGGTAATGAAGTCGGCGAT
CTCCTCGATGACCTCATAGGGATACGTGTCTTCGTTGAGAACCCGAGGGC
TCTTAG
BS16519.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-PB | 1062 | CG16758-RB | 183..1062 | 896..17 | 4400 | 100 | Minus |
CG16758-PD | 990 | CG16758-RD | 129..990 | 878..17 | 4310 | 100 | Minus |
CG16758-PE | 966 | CG16758-RE | 108..966 | 875..17 | 4295 | 100 | Minus |
CG16758-PF | 987 | CG16758-RF | 129..987 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-RH | 1689 | CG16758-RH | 634..1524 | 906..17 | 4430 | 99.9 | Minus |
CG16758-RB | 1560 | CG16758-RB | 505..1395 | 906..17 | 4430 | 99.9 | Minus |
CG16758-RD | 1488 | CG16758-RD | 462..1323 | 878..17 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2499689..2500467 | 102..880 | 3880 | 99.9 | Plus |
3L | 28110227 | 3L | 2499537..2499625 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:59:30 has no hits.
BS16519.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:53:21 Download gff for
BS16519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-PB | 172..1062 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:51 Download gff for
BS16519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 505..1400 | 13..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:04 Download gff for
BS16519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 505..1400 | 13..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:04 Download gff for
BS16519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2499532..2499623 | 13..103 | 97 | <- | Plus |
3L | 2499691..2500462 | 104..875 | 100 | <- | Plus |
3L | 2501070..2501101 | 876..906 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:51 Download gff for
BS16519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2499532..2499623 | 13..103 | 97 | <- | Plus |
arm_3L | 2499691..2500462 | 104..875 | 100 | <- | Plus |
arm_3L | 2501070..2501101 | 876..906 | 96 | | Plus |
BS16519.5prime Sequence
944 bp (806 high quality bases) assembled on 2007-05-15
> BS16519.5prime
GAAGTTATCAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGAC
ACAGCAATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACAC
AGCAATGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGG
AAATGGAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTC
GGGTTCTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCC
GACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTG
CGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCT
TCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCAT
GCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGAT
GCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAA
TGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACC
AATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCT
GATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCC
AGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAAC
TCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCAT
GGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTC
CCAACTACGAGACCATCGCCGAGCTGAAGGCCCTGCGCATGATGGGCGTG
AATGCGGTGGGCATGTCCACCGTACATGAGGTCATCACTGCACGGCACTG
CGACATGAANGTATTCGCCCTCAGCCTCATCACAAATAAGTGCG
BS16519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-PB | 1062 | CG16758-RB | 1..928 | 17..944 | 4571 | 99.6 | Plus |
CG16758-PD | 990 | CG16758-RD | 129..856 | 217..944 | 3571 | 99.5 | Plus |
CG16758-PE | 966 | CG16758-RE | 108..832 | 220..944 | 3556 | 99.5 | Plus |
CG16758-PF | 987 | CG16758-RF | 129..853 | 220..944 | 3556 | 99.5 | Plus |
CG16758-PD | 990 | CG16758-RD | 1..131 | 17..147 | 655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-RB | 1560 | CG16758-RB | 334..1261 | 17..944 | 4599 | 99.7 | Plus |
CG16758-RH | 1689 | CG16758-RH | 594..1390 | 148..944 | 3944 | 99.6 | Plus |
CG16758-RD | 1488 | CG16758-RD | 462..1189 | 217..944 | 3599 | 99.6 | Plus |
CG16758-RH | 1689 | CG16758-RH | 334..464 | 17..147 | 655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2499738..2500467 | 944..215 | 3594 | 99.5 | Minus |
3L | 28110227 | 3L | 2503143..2503273 | 147..17 | 655 | 100 | Minus |
3L | 28110227 | 3L | 2501068..2501141 | 221..148 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:57:44 has no hits.
BS16519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:49 Download gff for
BS16519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-PB | 1..928 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:03 Download gff for
BS16519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 323..1261 | 8..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:44 Download gff for
BS16519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 323..1261 | 8..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:44 Download gff for
BS16519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2499738..2500462 | 220..944 | 99 | <- | Minus |
3L | 2501070..2501141 | 148..219 | 100 | <- | Minus |
3L | 2503143..2503284 | 8..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:03 Download gff for
BS16519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2499738..2500462 | 220..944 | 99 | <- | Minus |
arm_3L | 2501070..2501141 | 148..219 | 100 | <- | Minus |
arm_3L | 2503143..2503284 | 8..147 | 97 | | Minus |
BS16519.complete Sequence
1094 bp assembled on 2007-05-07
GenBank Submission: FJ638158
> BS16519.complete
GAAGTTATCAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGAC
ACAGCAATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACAC
AGCAATGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGG
AAATGGAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTC
GGGTTCTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCC
GACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTG
CGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCT
TCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCAT
GCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGAT
GCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAA
TGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACC
AATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCT
GATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCC
AGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAAC
TCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCAT
GGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTC
CCAACTACGAGACCATCGCCGAGCTGAAGGCCCTGCGCATGATGGGCGTG
GATGCGGTGGGCATGTCCACCGTACATGAGGTCATCACTGCACGGCACTG
CGACATGAAGGTATTCGCCTTCAGCCTCATCACAAATAAGTGCGCCACCG
AGTACAGCGATAAGAAGGACGATGAGGCCAACCACGATGAGGTTATGGCT
GTGGCCAAGAACAGGCAAAAGGCCTGCTGCGAACTGGTCTCCCGACTCAT
CCGGGAAATCCACTTGGCATCCGCTTAAAAGCTTTCTAGACCAT
BS16519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-RB | 1062 | CG16758-PB | 1..1062 | 17..1078 | 5310 | 100 | Plus |
CG16758-RH | 1191 | CG16758-PH | 261..1191 | 148..1078 | 4655 | 100 | Plus |
CG16758-RD | 990 | CG16758-PD | 129..990 | 217..1078 | 4310 | 100 | Plus |
CG16758-RH | 1191 | CG16758-PH | 1..131 | 17..147 | 655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-RB | 1560 | CG16758-RB | 334..1395 | 17..1078 | 5310 | 100 | Plus |
CG16758-RH | 1689 | CG16758-RH | 594..1524 | 148..1078 | 4655 | 100 | Plus |
CG16758-RD | 1488 | CG16758-RD | 462..1323 | 217..1078 | 4310 | 100 | Plus |
CG16758-RH | 1689 | CG16758-RH | 334..464 | 17..147 | 655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2499689..2500467 | 993..215 | 3880 | 99.9 | Minus |
3L | 28110227 | 3L | 2503143..2503273 | 147..17 | 655 | 100 | Minus |
3L | 28110227 | 3L | 2499537..2499625 | 1078..990 | 445 | 100 | Minus |
3L | 28110227 | 3L | 2501068..2501141 | 221..148 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:45:34 has no hits.
BS16519.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:44 Download gff for
BS16519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 1..1062 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:54 Download gff for
BS16519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 301..1378 | 8..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:03 Download gff for
BS16519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 334..1393 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:44 Download gff for
BS16519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 301..1378 | 8..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:26 Download gff for
BS16519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 334..1393 | 17..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:26 Download gff for
BS16519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2499539..2499623 | 992..1076 | 100 | <- | Minus |
3L | 2499691..2500462 | 220..991 | 100 | <- | Minus |
3L | 2501070..2501141 | 148..219 | 100 | <- | Minus |
3L | 2503143..2503273 | 17..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:03 Download gff for
BS16519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2499539..2499623 | 992..1076 | 100 | <- | Minus |
arm_3L | 2499691..2500462 | 220..991 | 100 | <- | Minus |
arm_3L | 2501070..2501141 | 148..219 | 100 | <- | Minus |
arm_3L | 2503143..2503273 | 17..147 | 100 | | Minus |
BS16519.pep Sequence
Translation from 16 to 1077
> BS16519.pep
MTGYKVANGNGHSNGNGNTKGTNGTNGHSNGHKSADYTAQENPTGNGKIQ
CELTHEELRALRVLNEDTYPYEVIEEIADFITKGSGMRPKIGIICGSGLG
SLADMIQDPKIFEYEKIPNFPVSTVEGHAGRLVVGTLEGATVMAMQGRFH
FYEGYPLAKCSMPVRVMKLCGVEYLFATNAAGGINPRFAVGDIMLMHDHV
NMLGFAGNSPLQGPNDPRFGPRFPALVNSYNKDLINKAIEIAKAMGIESN
IHVGVYSCLGGPNYETIAELKALRMMGVDAVGMSTVHEVITARHCDMKVF
AFSLITNKCATEYSDKKDDEANHDEVMAVAKNRQKACCELVSRLIREIHL
ASA*
BS16519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-PB | 353 | CG16758-PB | 1..353 | 1..353 | 1866 | 100 | Plus |
CG16758-PH | 396 | CG16758-PH | 1..396 | 1..353 | 1812 | 89.1 | Plus |
CG16758-PD | 329 | CG16758-PD | 1..329 | 1..353 | 1706 | 93.2 | Plus |
CG16758-PG | 372 | CG16758-PG | 1..372 | 1..353 | 1702 | 89 | Plus |
CG16758-PE | 321 | CG16758-PE | 37..321 | 69..353 | 1494 | 100 | Plus |