Clone BS16519 Report

Search the DGRC for BS16519

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG16758-RB
Protein status:BS16519.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16519.3prime Sequence

906 bp (756 high quality bases) assembled on 2007-05-15

> BS16519.3prime
ATGGTCTAGAAAGCTTTTAAGCGGATGCCAAGTGGATTTCCCGGATGAGT
CGGGAGACCAGTTCGCAGCAGGCCTTTTGCCTGTTCTTGGCCACAGCCAT
AACCTCATCGTGGTTGGCCTCATCGTCCTTCTTATCGCTGTACTCGGTGG
CGCACTTATTTGTGATGAGGCTGAAGGCGAATACCTTCATGTCGCAGTGC
CGTGCAGTGATGACCTCATGTACGGTGGACATGCCCACCGCATCCACGCC
CATCATGCGCAGGGCCTTCAGCTCGGCGATGGTCTCGTAGTTGGGACCAC
CCAGACAGGAGTATACGCCGACGTGAATGTTGGACTCTATGCCCATGGCC
TTGGCGATCTCGATGGCCTTGTTGATTAGGTCCTTGTTGTACGAGTTCAC
CAGGGCGGGAAAGCGGGGTCCGAAGCGTGGGTCATTGGGTCCCTGGAGCG
GAGAATTTCCGGCAAAGCCCAGCATGTTGACATGGTCATGCATCAGCATG
ATGTCGCCCACCGCGAACCGTGGATTGATTCCACCAGCCGCATTGGTGGC
GAACAGGTATTCCACACCGCACAGCTTCATCACGCGAACCGGCATTGAGC
ACTTGGCCAGCGGATAGCCCTCGTAGAAGTGGAACCTGCCCTGCATCGCC
ATCACAGTGGCGCCCTCGAGTGTGCCGACCACCAGTCGTCCGGCATGGCC
CTCAACTGTAGATACCGGGAAGTTGGGGATCTTCTCATACTCGAAGATCT
TCGGGTCCTGGATCATATCGGCCAATGAGCCTAGCCCAGAGCCGCAGATG
ATGCCGATCTTGGGGCGCATGCCGGACCCCTTGGTAATGAAGTCGGCGAT
CTCCTCGATGACCTCATAGGGATACGTGTCTTCGTTGAGAACCCGAGGGC
TCTTAG

BS16519.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PB 1062 CG16758-RB 183..1062 896..17 4400 100 Minus
CG16758-PD 990 CG16758-RD 129..990 878..17 4310 100 Minus
CG16758-PE 966 CG16758-RE 108..966 875..17 4295 100 Minus
CG16758-PF 987 CG16758-RF 129..987 875..17 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RH 1689 CG16758-RH 634..1524 906..17 4430 99.9 Minus
CG16758-RB 1560 CG16758-RB 505..1395 906..17 4430 99.9 Minus
CG16758-RD 1488 CG16758-RD 462..1323 878..17 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2499689..2500467 102..880 3880 99.9 Plus
3L 28110227 3L 2499537..2499625 17..105 445 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:59:30 has no hits.

BS16519.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:53:21 Download gff for BS16519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-PB 172..1062 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:51 Download gff for BS16519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 505..1400 13..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:04 Download gff for BS16519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 505..1400 13..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:04 Download gff for BS16519.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2499532..2499623 13..103 97 <- Plus
3L 2499691..2500462 104..875 100 <- Plus
3L 2501070..2501101 876..906 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:51 Download gff for BS16519.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2499532..2499623 13..103 97 <- Plus
arm_3L 2499691..2500462 104..875 100 <- Plus
arm_3L 2501070..2501101 876..906 96   Plus

BS16519.5prime Sequence

944 bp (806 high quality bases) assembled on 2007-05-15

> BS16519.5prime
GAAGTTATCAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGAC
ACAGCAATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACAC
AGCAATGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGG
AAATGGAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTC
GGGTTCTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCC
GACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTG
CGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCT
TCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCAT
GCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGAT
GCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAA
TGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACC
AATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCT
GATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCC
AGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAAC
TCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCAT
GGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTC
CCAACTACGAGACCATCGCCGAGCTGAAGGCCCTGCGCATGATGGGCGTG
AATGCGGTGGGCATGTCCACCGTACATGAGGTCATCACTGCACGGCACTG
CGACATGAANGTATTCGCCCTCAGCCTCATCACAAATAAGTGCG

BS16519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PB 1062 CG16758-RB 1..928 17..944 4571 99.6 Plus
CG16758-PD 990 CG16758-RD 129..856 217..944 3571 99.5 Plus
CG16758-PE 966 CG16758-RE 108..832 220..944 3556 99.5 Plus
CG16758-PF 987 CG16758-RF 129..853 220..944 3556 99.5 Plus
CG16758-PD 990 CG16758-RD 1..131 17..147 655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RB 1560 CG16758-RB 334..1261 17..944 4599 99.7 Plus
CG16758-RH 1689 CG16758-RH 594..1390 148..944 3944 99.6 Plus
CG16758-RD 1488 CG16758-RD 462..1189 217..944 3599 99.6 Plus
CG16758-RH 1689 CG16758-RH 334..464 17..147 655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2499738..2500467 944..215 3594 99.5 Minus
3L 28110227 3L 2503143..2503273 147..17 655 100 Minus
3L 28110227 3L 2501068..2501141 221..148 370 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:57:44 has no hits.

BS16519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:49 Download gff for BS16519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-PB 1..928 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:03 Download gff for BS16519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 323..1261 8..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:44 Download gff for BS16519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 323..1261 8..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:44 Download gff for BS16519.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2499738..2500462 220..944 99 <- Minus
3L 2501070..2501141 148..219 100 <- Minus
3L 2503143..2503284 8..147 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:03 Download gff for BS16519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2499738..2500462 220..944 99 <- Minus
arm_3L 2501070..2501141 148..219 100 <- Minus
arm_3L 2503143..2503284 8..147 97   Minus

BS16519.complete Sequence

1094 bp assembled on 2007-05-07

GenBank Submission: FJ638158

> BS16519.complete
GAAGTTATCAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGAC
ACAGCAATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACAC
AGCAATGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGG
AAATGGAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTC
GGGTTCTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCC
GACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTG
CGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCT
TCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCAT
GCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGAT
GCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAA
TGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACC
AATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCT
GATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCC
AGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAAC
TCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCAT
GGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTC
CCAACTACGAGACCATCGCCGAGCTGAAGGCCCTGCGCATGATGGGCGTG
GATGCGGTGGGCATGTCCACCGTACATGAGGTCATCACTGCACGGCACTG
CGACATGAAGGTATTCGCCTTCAGCCTCATCACAAATAAGTGCGCCACCG
AGTACAGCGATAAGAAGGACGATGAGGCCAACCACGATGAGGTTATGGCT
GTGGCCAAGAACAGGCAAAAGGCCTGCTGCGAACTGGTCTCCCGACTCAT
CCGGGAAATCCACTTGGCATCCGCTTAAAAGCTTTCTAGACCAT

BS16519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RB 1062 CG16758-PB 1..1062 17..1078 5310 100 Plus
CG16758-RH 1191 CG16758-PH 261..1191 148..1078 4655 100 Plus
CG16758-RD 990 CG16758-PD 129..990 217..1078 4310 100 Plus
CG16758-RH 1191 CG16758-PH 1..131 17..147 655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RB 1560 CG16758-RB 334..1395 17..1078 5310 100 Plus
CG16758-RH 1689 CG16758-RH 594..1524 148..1078 4655 100 Plus
CG16758-RD 1488 CG16758-RD 462..1323 217..1078 4310 100 Plus
CG16758-RH 1689 CG16758-RH 334..464 17..147 655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2499689..2500467 993..215 3880 99.9 Minus
3L 28110227 3L 2503143..2503273 147..17 655 100 Minus
3L 28110227 3L 2499537..2499625 1078..990 445 100 Minus
3L 28110227 3L 2501068..2501141 221..148 370 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:45:34 has no hits.

BS16519.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:44 Download gff for BS16519.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1062 17..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:54 Download gff for BS16519.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 301..1378 8..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:03 Download gff for BS16519.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 334..1393 17..1076 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:44 Download gff for BS16519.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 301..1378 8..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:26 Download gff for BS16519.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 334..1393 17..1076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:26 Download gff for BS16519.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2499539..2499623 992..1076 100 <- Minus
3L 2499691..2500462 220..991 100 <- Minus
3L 2501070..2501141 148..219 100 <- Minus
3L 2503143..2503273 17..147 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:03 Download gff for BS16519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2499539..2499623 992..1076 100 <- Minus
arm_3L 2499691..2500462 220..991 100 <- Minus
arm_3L 2501070..2501141 148..219 100 <- Minus
arm_3L 2503143..2503273 17..147 100   Minus

BS16519.pep Sequence

Translation from 16 to 1077

> BS16519.pep
MTGYKVANGNGHSNGNGNTKGTNGTNGHSNGHKSADYTAQENPTGNGKIQ
CELTHEELRALRVLNEDTYPYEVIEEIADFITKGSGMRPKIGIICGSGLG
SLADMIQDPKIFEYEKIPNFPVSTVEGHAGRLVVGTLEGATVMAMQGRFH
FYEGYPLAKCSMPVRVMKLCGVEYLFATNAAGGINPRFAVGDIMLMHDHV
NMLGFAGNSPLQGPNDPRFGPRFPALVNSYNKDLINKAIEIAKAMGIESN
IHVGVYSCLGGPNYETIAELKALRMMGVDAVGMSTVHEVITARHCDMKVF
AFSLITNKCATEYSDKKDDEANHDEVMAVAKNRQKACCELVSRLIREIHL
ASA*

BS16519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PB 353 CG16758-PB 1..353 1..353 1866 100 Plus
CG16758-PH 396 CG16758-PH 1..396 1..353 1812 89.1 Plus
CG16758-PD 329 CG16758-PD 1..329 1..353 1706 93.2 Plus
CG16758-PG 372 CG16758-PG 1..372 1..353 1702 89 Plus
CG16758-PE 321 CG16758-PE 37..321 69..353 1494 100 Plus