Clone Sequence Records
BS16520.3prime Sequence
912 bp (832 high quality bases) assembled on 2007-05-15
> BS16520.3prime
ATGGTCTAGAAAGCTTTTAACTAGACCCTGAGGCCGTTGCACGGGTAAGG
CGGTACTTTTGCACTGCGTAGTGCGCTCCCTCCTCGGAGGTCAACTGATC
CACGTACTCCTCCTTCACGAATCGATTGCTCACCGCATTGAGCGAGTCCT
TGATAAAGCCAAAATGCACGATGGCATTTGGAACAAAATTCAGCTCCAGG
AGCGTCTCACCGGAGGGCAGCACCTTCTTCGGTGGAATGGTGAAGAGATG
GAATTGCTCACCTGGCTGAACCAAAAACTCCCGAACAAAATCCTCCACCT
TGGAAAGGGGCTCGTGCGGCTTAAACATGCCCTGGAGCACGAAGCGATCG
GGAAACTGAATGCGCAGCACACAGTCCTTGTACTGGTTAAGCTTAGCCAG
CATGGCCTTTTGGCGCTCCAATTCCCTTAGCTTTGCTGTCAGCAAGGGAG
CGTCGTCATCTCCGCTCGACGTACGCTTTAAATCACGGAGTACCATCTTC
AAATCGTTGACGGTCAAGTCGAAAAATGAGTCCGGCAGGTCATTCGCATT
TTTCTTGGATTCGTCCAAGGAAAAGAGTACAGCCTGGCGTGGCCCAATTA
TTTTCACCACTGGTGGAGCCCTGCCTGGATTCTCTTCGACTTCGTTTTCT
GCCTGCTTCTGCTCGGGAGGGTGGTTCATTAAGTATCCGGAACCATTGCC
CCAGTCATATTTAGGTGGTTCTGGCTGAGGCTGCTGCTCTTGATTGGATT
CCCCTAAGGGCTTGGCTGGTTCGCTACCGCTGGCCTTTTCTTCAGGAGCC
GTGCGTTTCAAATTCTTGATCATGTTGCTGGTAAGAGCAAATCCACCTCC
TCCTCCCGCTGCACCAGCTGCCATTGCAGAGCGGGAGGTACTGGGGCTGG
TCGTCATTGTCC
BS16520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-PC | 1437 | CG33722-RC | 598..1437 | 856..17 | 4200 | 100 | Minus |
| CG33722-PB | 1437 | CG33722-RB | 598..1437 | 856..17 | 4200 | 100 | Minus |
| CG33722-PC | 1437 | CG33722-RC | 559..592 | 895..862 | 170 | 100 | Minus |
| CG33722-PB | 1437 | CG33722-RB | 559..592 | 895..862 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-RE | 3544 | CG33722-RE | 646..1540 | 912..17 | 4410 | 99.7 | Minus |
| CG33722-RD | 1585 | CG33722-RD | 646..1540 | 912..17 | 4410 | 99.7 | Minus |
| CG33722-RB | 1547 | CG33722-RB | 608..1502 | 912..17 | 4410 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8244755..8245649 | 912..17 | 4355 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:04:49 has no hits.
BS16520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:53:30 Download gff for
BS16520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-PB | 543..1437 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:53 Download gff for
BS16520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RC | 646..1543 | 14..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:39:03 Download gff for
BS16520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 608..1505 | 14..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:39:03 Download gff for
BS16520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8244755..8245652 | 14..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:53 Download gff for
BS16520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4070477..4071374 | 14..912 | 99 | | Minus |
BS16520.5prime Sequence
879 bp (799 high quality bases) assembled on 2007-05-15
> BS16520.5prime
GAAGTTATCAGTCGACATGGACAAGCGCGTAACAGTCCTGCTGCCCAATG
GTCGGCGGCAGAATGTGAACGTGACGGCGAACATGACGCTGTTGGAGATT
CTGGAGACGGCCTGCTTCAAGCACGGCTACGATGCGGAGGAGCACTGCCT
CAAGTTTCACAACAAGGTGGTCGGATTGACGCAACAGTTCCGTTTTAGTG
GCCTGCCTAACAACTGTGTCCTGGAGATGGAGCAAACAGAAAAGCGGCGC
ACACTGAGTAACGTTCTTGTCTGCGTCCAATTGAACGACGGTTCCCGCCA
GCAAGGGGACTTCTCGCCCAACGACACCATATGGCTGGTGGTCGAGAAGC
TTTGCGAAACACATGTAAAGGCTTACGAAAGCCCCGTCATCATCTACATG
CGCAGCGAGGTCATAGGACATGAGCAGATGCGACAGACCACTCTTAAGTC
CCTAGGAATCCTCGAGGGTCGTGCCATGATGCGTCTTATCGACAAAAAAC
CCGAGGACCTTAAGACCCAGGCAAATGTGTATAAAGCTCCCGCTGTCAAG
CCTCGGGTGGACAATGACGACCAGCCCAGTACCTCCCGCTCTGCAATGGC
AGCTGGTGGCAGCGGAGGAGGAGGTGGATTTGCTCTTACCAGCAACATGA
TCAAGAATTTGAAACGCACGGCTCCTGAAGAAAAGGCCAGCGGTAGCGAA
CCAGCCAAGCCCTTAGGGGAATCCAATCAAGAGCAGCAGCCTCAGCCAGA
ACCACCTAAATATGACTGGGGCAATGGTTCCGGATACTTAATGAACCACC
CTCCCGAGCAGAAGCAGGCAGAAAACGAAGTCGAAGAGAATCCAGGCAGG
GCTCCACCAGTGGTGAAAATAATTGGGCC
BS16520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-PC | 1437 | CG33722-RC | 1..863 | 17..879 | 4315 | 100 | Plus |
| CG33722-PB | 1437 | CG33722-RB | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-RE | 3544 | CG33722-RE | 104..966 | 17..879 | 4315 | 100 | Plus |
| CG33722-RD | 1585 | CG33722-RD | 104..966 | 17..879 | 4315 | 100 | Plus |
| CG33722-RB | 1547 | CG33722-RB | 66..928 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8244213..8245075 | 17..879 | 4315 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 15:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 669..714 | 644..598 | 115 | 74.5 | Minus |
BS16520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:47:58 Download gff for
BS16520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-PB | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:06 Download gff for
BS16520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RC | 97..966 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:02 Download gff for
BS16520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 59..928 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:02 Download gff for
BS16520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8244206..8245075 | 9..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:06 Download gff for
BS16520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4069928..4070797 | 9..879 | 99 | | Plus |
BS16520.complete Sequence
1469 bp assembled on 2007-05-07
GenBank Submission: FJ638159
> BS16520.complete
GAAGTTATCAGTCGACATGGACAAGCGCGTAACAGTCCTGCTGCCCAATG
GTCGGCGGCAGAATGTGAACGTGACGGCGAACATGACGCTGTTGGAGATT
CTGGAGACGGCCTGCTTCAAGCACGGCTACGATGCGGAGGAGCACTGCCT
CAAGTTTCACAACAAGGTGGTCGGATTGACGCAACAGTTCCGTTTTAGTG
GCCTGCCTAACAACTGTGTCCTGGAGATGGAGCAAACAGAAAAGCGGCGC
ACACTGAGTAACGTTCTTGTCTGCGTCCAATTGAACGACGGTTCCCGCCA
GCAAGGGGACTTCTCGCCCAACGACACCATATGGCTGGTGGTCGAGAAGC
TTTGCGAAACACATGTAAAGGCTTACGAAAGCCCCGTCATCATCTACATG
CGCAGCGAGGTCATAGGACATGAGCAGATGCGACAGACCACTCTTAAGTC
CCTAGGAATCCTCGAGGGTCGTGCCATGATGCGTCTTATCGACAAAAAAC
CCGAGGACCTTAAGACCCAGGCAAATGTGTATAAAGCTCCCGCTGTCAAG
CCTCGGGTGGACAATGACGACCAGCCCAGTACCTCCCGCTCTGCAATGGC
AGCTGGTGGCAGCGGAGGAGGAGGTGGATTTGCTCTTACCAGCAACATGA
TCAAGAATTTGAAACGCACGGCTCCTGAAGAAAAGGCCAGCGGTAGCGAA
CCAGCCAAGCCCTTAGGGGAATCCAATCAAGAGCAGCAGCCTCAGCCAGA
ACCACCTAAATATGACTGGGGCAATGGTTCCGGATACTTAATGAACCACC
CTCCCGAGCAGAAGCAGGCAGAAAACGAAGTCGAAGAGAATCCAGGCAGG
GCTCCACCAGTGGTGAAAATAATTGGGCCACGCCAGGCTGTACTCTTTTC
CTTGGACGAATCCAAGAAAAATGCGAATGACCTGCCGGACTCATTTTTCG
ACTTGACCGTCAACGATTTGAAGATGGTACTCCGTGATTTAAAGCGTACG
TCGAGCGGAGATGACGACGCTCCCTTGCTGACAGCAAAGCTAAGGGAATT
GGAGCGCCAAAAGGCCATGCTGGCTAAGCTTAACCAGTACAAGGACTGTG
TGCTGCGCATTCAGTTTCCCGATCGCTTCGTGCTCCAGGGCATGTTTAAG
CCGCACGAGCCCCTTTCCAAGGTGGAGGATTTTGTTCGGGAGTTTTTGGT
TCAGCCAGGTGAGCAATTCCATCTCTTCACCATTCCACCGAAGAAGGTGC
TGCCCTCCGGTGAGACGCTCCTGGAGCTGAATTTTGTTCCAAATGCCATC
GTGCATTTTGGCTTTATCAAGGACTCGCTCAATGCGGTGAGCAATCGATT
CGTGAAGGAGGAGTACGTGGATCAGTTGACCTCCGAGGAGGGAGCGCACT
ACGCAGTGCAAAAGTACCGCCTTACCCGTGCAACGGCCTCAGGGTCTAGT
TAAAAGCTTTCTAGACCAT
BS16520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-RE | 1437 | CG33722-PE | 1..1437 | 17..1453 | 7185 | 100 | Plus |
| CG33722-RD | 1437 | CG33722-PD | 1..1437 | 17..1453 | 7185 | 100 | Plus |
| CG33722-RB | 1437 | CG33722-PB | 1..1437 | 17..1453 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-RE | 3544 | CG33722-RE | 104..1540 | 17..1453 | 7185 | 100 | Plus |
| CG33722-RD | 1585 | CG33722-RD | 104..1540 | 17..1453 | 7185 | 100 | Plus |
| CG33722-RB | 1547 | CG33722-RB | 66..1502 | 17..1453 | 7185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8244213..8245649 | 17..1453 | 7185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:07:08 has no hits.
BS16520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:46 Download gff for
BS16520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 1..1437 | 17..1453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:58 Download gff for
BS16520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 59..1505 | 9..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:07 Download gff for
BS16520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RC | 104..1538 | 17..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:46 Download gff for
BS16520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 59..1505 | 9..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:42 Download gff for
BS16520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 66..1500 | 17..1451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:42 Download gff for
BS16520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8244213..8245647 | 17..1451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:07 Download gff for
BS16520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4069935..4071369 | 17..1451 | 100 | | Plus |
BS16520.pep Sequence
Translation from 16 to 1452
> BS16520.pep
MDKRVTVLLPNGRRQNVNVTANMTLLEILETACFKHGYDAEEHCLKFHNK
VVGLTQQFRFSGLPNNCVLEMEQTEKRRTLSNVLVCVQLNDGSRQQGDFS
PNDTIWLVVEKLCETHVKAYESPVIIYMRSEVIGHEQMRQTTLKSLGILE
GRAMMRLIDKKPEDLKTQANVYKAPAVKPRVDNDDQPSTSRSAMAAGGSG
GGGGFALTSNMIKNLKRTAPEEKASGSEPAKPLGESNQEQQPQPEPPKYD
WGNGSGYLMNHPPEQKQAENEVEENPGRAPPVVKIIGPRQAVLFSLDESK
KNANDLPDSFFDLTVNDLKMVLRDLKRTSSGDDDAPLLTAKLRELERQKA
MLAKLNQYKDCVLRIQFPDRFVLQGMFKPHEPLSKVEDFVREFLVQPGEQ
FHLFTIPPKKVLPSGETLLELNFVPNAIVHFGFIKDSLNAVSNRFVKEEY
VDQLTSEEGAHYAVQKYRLTRATASGSS*
BS16520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-PE | 478 | CG33722-PE | 1..478 | 1..478 | 2484 | 100 | Plus |
| CG33722-PD | 478 | CG33722-PD | 1..478 | 1..478 | 2484 | 100 | Plus |
| CG33722-PB | 478 | CG33722-PB | 1..478 | 1..478 | 2484 | 100 | Plus |
| CG33722-PC | 478 | CG33722-PC | 1..478 | 1..478 | 2484 | 100 | Plus |
