Clone Sequence Records
BS16522.3prime Sequence
857 bp (813 high quality bases) assembled on 2007-05-15
> BS16522.3prime
ATGGTCTAGAAAGCTTTTACAACTTGAGCTTGATGTTGTCCGTAGTCCAT
CGCTTGCTCTGGAGGCTTTTCAGCGCATTCTCGCAGTAGAACTGCTCCTC
GGATCGCTCGGGCAGGGTGTCCTTGAGCTGCTGTAGCTCCTGCTGCTGCT
TCAACCCGGCCATGGCATCTATGACCGCCTTGATGCACTTCACCCGCTGG
GCTAGCGCCAGTTTCTCAACGCTGTTGCCCATCTTGGAGAGGAATAGCTG
AAGGACGGTCGAGGGAGCCTGCAGCTCGTACAGCCGGAGCACGGCCAGCG
TCAGATCGAAGCTGATGTGAAACTGTTTGGTCTTCAGCGGATGCCAACTG
GGCACCCGCTCAAATATGCACTCCAGATCCGCATAAGCCTGTGCCTGCGC
CCTTTCATTGAGCGCCGTCCACTCGTACTGGGCCGGCGATATTTGCTGGT
CGGCGGCAAAACGCTGAGGTGACACTGGTTTGAGCATATCCTGCTCTTTC
CAATTGCTGTTCACCTGGCAGCAAGCATAGAGCACTTCCACTGGAGTGGG
TTGATCCCGAAGCAGCTTGCCGAGCGCGCTATCCTTCTCCATTAGCTGCT
GCATCTTGAGGGCAGCGTGAAAAACCTGCTCGTAGAGAGGTATTACACCC
ACTCCCGCTGTGGCATAGGCATCCACCAAAAGCTGGAGGTGTTTCTTCCT
GGTGCTCGTATCTCCGGAAGCGAGCGCTGCCTGAAACTGCTTAAGAGCCG
CCTCCTGGTGGCGTCCAAATAGCTGCAGTAGCTCAATATGGCCCGCCAGG
TCGCCACTTTCCTTCAGGTAACTCAGATACTGCTCCAAGGCCTTGGGTCT
CTCCCTC
BS16522.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18112-PA | 1344 | Vps16B-RA | 504..1344 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-RA | 1531 | CG18112-RA | 549..1391 | 857..15 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29815061..29815903 | 15..857 | 4215 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2145..2217 | 76..2 | 109 | 62.7 | Minus |
BS16522.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:24 Download gff for
BS16522.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18112-PA | 504..1344 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:18:45 Download gff for
BS16522.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 549..1401 | 8..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:01 Download gff for
BS16522.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 549..1401 | 8..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:01 Download gff for
BS16522.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29815051..29815903 | 8..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:18:45 Download gff for
BS16522.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25640773..25641625 | 8..857 | 99 | | Plus |
BS16522.5prime Sequence
821 bp (788 high quality bases) assembled on 2007-05-15
> BS16522.5prime
GAAGTTATCAGTCGACATGGACCTGCAATTGGACAGCGAAAGCTATTGGA
ACCGATCCTCTCGCGCAGCGTTCAGCTTCGACGACGAAGACGAGGTGGAC
CTCGCCCCGGATCTGGTCAGCAATGGCATCCTCGCCGACGACACCATTTC
GGAGGCCAGCTTCAATAACAGTGTCGCCCTGAATCTCTCGATCAAATCCA
TTCTGAGCGAGGAGGCATTGAAACTGGTGCTGCAGGAACAGGCGCTGGAC
GACAGGGTCCTGCCCAAGGGTGTCTCGCCGGAGGAGGAGCTGAAGCTGCT
GCGCCGACAGCTTCAGAGCACCCTGTACAGCCCCAATCTAGAAGCCACTG
CACAGAAGCTGCTGCAAGGAAAGACTGCGCCCTTGGAGATGTTCAAGTCG
CTGCATGAGAAGCAGCAGCTGCTGGACACCCTGATGGCACAAGGTGGTGG
GCATGCCGTCATTACAGTGTTGCTCTTCCTCAAGAGAACTCTGAATACCA
CGCAGTTTCATGGCATTCTGAGGGAGAGACCCAAGGCCTTGGAGCAGTAT
CTGAGTTACCTGAAGGAAAGTGGCGACCTGGCGGGCCATATTGAGCTACT
GCAGCTATTTGGACGCCACCAGGAGGCGGCTCTTAAGCAGTTTCAGGCAG
CGCTCGCTTCCGGAGATACGAGCACCAGGAAGAAACACCTCCAGCTTTTG
GTGGATGCCTATGCCACAGCGGGAGTGGGTGTAATACCTCTCTACGAGCA
GGTTTTTCACGCTGCCCTCAAGATGCAGCAGCTAATGGAGAAGGATAGCG
CGCTCGGCAAGCTGCTTCGGG
BS16522.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18112-PA | 1344 | Vps16B-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-RA | 1531 | CG18112-RA | 46..850 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29815602..29816406 | 821..17 | 4025 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:49 has no hits.
BS16522.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:50:48 Download gff for
BS16522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18112-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:27 Download gff for
BS16522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 46..850 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:58 Download gff for
BS16522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 46..850 | 17..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:58 Download gff for
BS16522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29815602..29816400 | 23..821 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:27 Download gff for
BS16522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25641324..25642122 | 23..821 | 100 | -> | Minus |
BS16522.complete Sequence
1376 bp assembled on 2007-05-07
GenBank Submission: FJ638160
> BS16522.complete
GAAGTTATCAGTCGACATGGACCTGCAATTGGACAGCGAAAGCTATTGGA
ACCGATCCTCTCGCGCAGCGTTCAGCTTCGACGACGAAGACGAGGTGGAC
CTCGCCCCGGATCTGGTCAGCAATGGCATCCTCGCCGACGACACCATTTC
GGAGGCCAGCTTCAATAACAGTGTCGCCCTGAATCTCTCGATCAAATCCA
TTCTGAGCGAGGAGGCATTGAAACTGGTGCTGCAGGAACAGGCGCTGGAC
GACAGGGTCCTGCCCAAGGGTGTCTCGCCGGAGGAGGAGCTGAAGCTGCT
GCGCCGACAGCTTCAGAGCACCCTGTACAGCCCCAATCTAGAAGCCACTG
CACAGAAGCTGCTGCAAGGAAAGACTGCGCCCTTGGAGATGTTCAAGTCG
CTGCATGAGAAGCAGCAGCTGCTGGACACCCTGATGGCACAAGGTGGTGG
GCATGCCGTCATTACAGTGTTGCTCTTCCTCAAGAGAACTCTGAATACCA
CGCAGTTTCATGGCATTCTGAGGGAGAGACCCAAGGCCTTGGAGCAGTAT
CTGAGTTACCTGAAGGAAAGTGGCGACCTGGCGGGCCATATTGAGCTACT
GCAGCTATTTGGACGCCACCAGGAGGCGGCTCTTAAGCAGTTTCAGGCAG
CGCTCGCTTCCGGAGATACGAGCACCAGGAAGAAACACCTCCAGCTTTTG
GTGGATGCCTATGCCACAGCGGGAGTGGGTGTAATACCTCTCTACGAGCA
GGTTTTTCACGCTGCCCTCAAGATGCAGCAGCTAATGGAGAAGGATAGCG
CGCTCGGCAAGCTGCTTCGGGATCAACCCACTCCAGTGGAAGTGCTCTAT
GCTTGCTGCCAGGTGAACAGCAATTGGAAAGAGCAGGATATGCTCAAACC
AGTGTCACCTCAGCGTTTTGCCGCCGACCAGCAAATATCGCCGGCCCAGT
ACGAGTGGACGGCGCTCAATGAAAGGGCGCAGGCACAGGCTTATGCGGAT
CTGGAGTGCATATTTGAGCGGGTGCCCAGTTGGCATCCGCTGAAGACCAA
ACAGTTTCACATCAGCTTCGATCTGACGCTGGCCGTGCTCCGGCTGTACG
AGCTGCAGGCTCCCTCGACCGTCCTTCAGCTATTCCTCTCCAAGATGGGC
AACAGCGTTGAGAAACTGGCGCTAGCCCAGCGGGTGAAGTGCATCAAGGC
GGTCATAGATGCCATGGCCGGGTTGAAGCAGCAGCAGGAGCTACAGCAGC
TCAAGGACACCCTGCCCGAGCGATCCGAGGAGCAGTTCTACTGCGAGAAT
GCGCTGAAAAGCCTCCAGAGCAAGCGATGGACTACGGACAACATCAAGCT
CAAGTTGTAAAAGCTTTCTAGACCAT
BS16522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-RA | 1344 | CG18112-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-RA | 1531 | CG18112-RA | 46..1391 | 17..1362 | 6730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29815061..29816406 | 1362..17 | 6730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:02:48 has no hits.
BS16522.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:48 Download gff for
BS16522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 1..1344 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:00 Download gff for
BS16522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 45..1400 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:23 Download gff for
BS16522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 46..1387 | 17..1358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:48 Download gff for
BS16522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 45..1400 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:52 Download gff for
BS16522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 46..1387 | 17..1358 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:52 Download gff for
BS16522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29815065..29816406 | 17..1358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:23 Download gff for
BS16522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25640787..25642128 | 17..1358 | 100 | | Minus |
BS16522.pep Sequence
Translation from 16 to 1359
> BS16522.pep
MDLQLDSESYWNRSSRAAFSFDDEDEVDLAPDLVSNGILADDTISEASFN
NSVALNLSIKSILSEEALKLVLQEQALDDRVLPKGVSPEEELKLLRRQLQ
STLYSPNLEATAQKLLQGKTAPLEMFKSLHEKQQLLDTLMAQGGGHAVIT
VLLFLKRTLNTTQFHGILRERPKALEQYLSYLKESGDLAGHIELLQLFGR
HQEAALKQFQAALASGDTSTRKKHLQLLVDAYATAGVGVIPLYEQVFHAA
LKMQQLMEKDSALGKLLRDQPTPVEVLYACCQVNSNWKEQDMLKPVSPQR
FAADQQISPAQYEWTALNERAQAQAYADLECIFERVPSWHPLKTKQFHIS
FDLTLAVLRLYELQAPSTVLQLFLSKMGNSVEKLALAQRVKCIKAVIDAM
AGLKQQQELQQLKDTLPERSEEQFYCENALKSLQSKRWTTDNIKLKL*
BS16522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-PA | 447 | CG18112-PA | 1..447 | 1..447 | 2251 | 100 | Plus |
