Clone BS16529 Report

Search the DGRC for BS16529

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG13204-RB
Protein status:BS16529.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16529.3prime Sequence

900 bp (866 high quality bases) assembled on 2007-05-15

> BS16529.3prime
ATGGTCTAGAAAGCTTTTAAACCTGGCCCGTGGAGGGCGCTCCGTTCATG
GTCGCCTCCTCGTCGGAGGAGATGTCTATCATGCTCTCCACACGCGACGG
CGACATCACATACACAAAGTGCTCCGTGGAGCCCTCGGGGCCGACTGGCG
GCGGGGGTATGACCACGGAGCCGTCCTGCGGCGGCGGTGGCGGAGTATCT
ATGCTGCAGTACTTGAGATTCCCAGCTCCTCCTCCGCCTGAATCATCCGG
CGGTGGCGCTCCACCGTTGCAATCAAAGTTCTCCAGCTCTAGCTCCAAAT
CACTGACGATTCGCATGCAACGCATCTTGGCGAGCGACTGGAATTTCATG
GGCATAGCTCGCACCTGCCGCGCCAGACTCAAGAAGAAAAGAGTGTTTGC
GTCAAGTTCTCTGTTGGCCTGTAGCACGGCAGAGACGTCCCAATCGCTCG
GAAAACGCGGATCGCAAATCTTACGCGTTTTGGCGGGCGACGGCTGTTGT
TGCTGTTGAATTTGTGGCATTTGCATTGACTGCTGCTGCTGCGTTTGTAC
GGAATTCCCTCCGGAGCAACTTAGGTTGATGGCCGTGGTTTGCGGCGAAG
GTTGTACCCTTCGCACCTTGGAGGCTGGTGGCGCTGGCGGCGGCGGCGGA
GGAGTGGGATTACCCATGGGTAAGCTCGGGCAGCTGCCGTTCAAACGATT
GGCGTTCTGCACTTGGTTGGCCAGGTTCTGGAACAATCCCAAAGGTGCTC
CAGCTGCCGCAGCCGCTGTCAGTTCCTTCTTGAAGTTGTCCGCCGCCGCA
AAGAGATGCGGCTCGATGATCAGACAACCGACATTGCTGTTGGTTGCGCT
GCCGGTGCTGCAACCAGGCGGCGTGATCGTAGGTGGCAGGGGAAGACCAG

BS16529.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-PA 1818 CG13204-RA 935..1818 900..17 4395 99.8 Minus
CG13204-PB 1515 CG13204-RB 632..1515 900..17 4395 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RB 1797 CG13204-RB 863..1746 900..17 4405 99.9 Minus
CG13204-RA 2074 CG13204-RA 1140..2023 900..17 4405 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11369353..11370236 900..17 4405 99.9 Minus
Blast to na_te.dros performed 2015-02-11 02:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6854 548..487 148 71 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2418 541..487 133 74.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2402 548..491 128 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6797 541..477 123 67.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6806 541..487 122 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2394 548..493 119 73.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6899 548..493 116 71.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2427 542..493 115 70 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6863..6923 552..493 114 69.8 Minus
roo 9092 roo DM_ROO 9092bp 1076..1132 547..491 114 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2447..2508 548..487 112 64.5 Minus

BS16529.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:51 Download gff for BS16529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-PB 632..1515 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:05 Download gff for BS16529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 1140..2025 13..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:17:38 Download gff for BS16529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 1140..2025 13..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:17:38 Download gff for BS16529.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11369353..11370238 13..900 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:05 Download gff for BS16529.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7256858..7257743 13..900 99   Minus

BS16529.5prime Sequence

864 bp (768 high quality bases) assembled on 2007-05-15

> BS16529.5prime
GAAGTTATCAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCA
GGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAG
TGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGA
GGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCA
TGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCG
GCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGAT
CTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGG
GACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTA
AACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAG
TGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCT
CAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTG
GCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC
CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTGCTG
GTCTTCCCCTGCCACCTACGATCACGCCGCCTGGTTGCAGCACCGGCAGC
GCAACCAACAGCAATGTCGGTTGTCTGATCATCGAGCCGCATCTCTTTGC
GGCGGCGGACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGCTGGAG
CACCTTTGGGATTGTTCCAGAACCTGGCCAAACCAGTGCAGAACGCCAAT
CGTTTGAACGGCAG

BS16529.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-PA 1818 CG13204-RA 302..1151 15..864 4200 99.7 Plus
CG13204-PB 1515 CG13204-RB 1..848 17..864 4190 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RB 1797 CG13204-RB 230..1079 15..864 4220 99.8 Plus
CG13204-RA 2074 CG13204-RA 507..1356 15..864 4220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11368755..11369569 50..864 4045 99.8 Plus
2R 25286936 2R 11368662..11368699 15..52 190 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:34:35 has no hits.

BS16529.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:07 Download gff for BS16529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-PA 296..1151 9..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:29 Download gff for BS16529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 501..1356 9..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:27 Download gff for BS16529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 501..1356 9..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:27 Download gff for BS16529.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11368656..11368698 9..51 95 -> Plus
2R 11368757..11369569 52..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:29 Download gff for BS16529.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7256161..7256203 9..51 95 -> Plus
arm_2R 7256262..7257074 52..864 99   Plus

BS16529.complete Sequence

1547 bp assembled on 2007-05-07

GenBank Submission: FJ638161

> BS16529.complete
GAAGTTATCAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCA
GGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAG
TGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGA
GGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCA
TGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCG
GCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGAT
CTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGG
GACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTA
AACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAG
TGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCT
CAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTG
GCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC
CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTGCTG
GTCTTCCCCTGCCACCTACGATCACGCCGCCTGGTTGCAGCACCGGCAGC
GCAACCAACAGCAATGTCGGTTGTCTGATCATCGAGCCGCATCTCTTTGC
GGCGGCGGACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGCTGGAG
CACCTTTGGGATTGTTCCAGAACCTGGCCAACCAAGTGCAGAACGCCAAT
CGTTTGAACGGCAGCTGCCCGAGCTTACCCATGGGTAATCCCACTCCTCC
GCCGCCGCCGCCAGCGCCACCAGCCTCCAAGGTGCGAAGGGTACAACCTT
CGCCGCAAACCACGGCCATCAACCTAAGTTGCTCCGGAGGGAATTCCGTA
CAAACGCAGCAGCAGCAGTCAATGCAAATGCCACAAATTCAACAGCAACA
ACAGCCGTCGCCCGCCAAAACGCGTAAGATTTGCGATCCGCGTTTTCCGA
GCGATTGGGACGTCTCTGCCGTGCTACAGGCCAACAGAGAACTTGACGCA
AACACTCTTTTCTTCTTGAGTCTGGCGCGGCAGGTGCGAGCTATGCCCAT
GAAATTCCAGTCGCTCGCCAAGATGCGTTGCATGCGAATCGTCAGTGATT
TGGAGCTAGAGCTGGAGAACTTTGATTGCAACGGTGGAGCGCCACCGCCG
GATGATTCAGGCGGAGGAGGAGCTGGGAATCTCAAGTACTGCAGCATAGA
TACTCCGCCACCGCCGCCGCAGGACGGCTCCGTGGTCATACCCCCGCCGC
CAGTCGGCCCCGAGGGCTCCACGGAGCACTTTGTGTATGTGATGTCGCCG
TCGCGTGTGGAGAGCATGATAGACATCTCCTCCGACGAGGAGGCGACCAT
GAACGGAGCGCCCTCCACGGGCCAGGTTTAAAAGCTTTCTAGACCAT

BS16529.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RA 1818 CG13204-PA 302..1818 15..1531 7570 99.9 Plus
CG13204-RB 1515 CG13204-PB 1..1515 17..1531 7560 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RB 1797 CG13204-RB 230..1746 15..1531 7570 99.9 Plus
CG13204-RA 2074 CG13204-RA 507..2023 15..1531 7570 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11368755..11370236 50..1531 7395 99.9 Plus
2R 25286936 2R 11368662..11368699 15..52 190 100 Plus
Blast to na_te.dros performed 2014-11-28 01:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6854 1000..1061 148 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2402 1000..1057 128 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6797 1007..1071 123 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6806 1007..1061 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2394 1000..1055 119 73.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6899 1000..1055 116 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2427 1006..1055 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6863..6923 996..1055 114 69.8 Plus
roo 9092 roo DM_ROO 9092bp 1076..1132 1001..1057 114 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2447..2508 1000..1061 112 64.5 Plus

BS16529.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:49 Download gff for BS16529.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 296..1818 9..1531 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:01 Download gff for BS16529.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 231..1755 9..1535 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:17 Download gff for BS16529.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 509..2021 17..1529 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:49 Download gff for BS16529.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 231..1755 9..1535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:39 Download gff for BS16529.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 509..2021 17..1529 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:39 Download gff for BS16529.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11368664..11368698 17..51 100 -> Plus
2R 11368757..11370234 52..1529 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:17 Download gff for BS16529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7256169..7256203 17..51 100 -> Plus
arm_2R 7256262..7257739 52..1529 99   Plus

BS16529.pep Sequence

Translation from 16 to 1530

> BS16529.pep
MDFLKPFQGPGRNSANGNGKSNDEDDTECDFGYQVLAKAASNGGEDELKI
TIATASAGCSSMGTHTVNTYTTALSSTSASGITSSLGATTPPNMISPGSN
LGGTGGGSGSVGPQIHNSNSNGSATGSLNCAAVAPLSSMTPPATSGSNSA
VVLPLPISPASSVAAAAAAVSKANANALASLANHLPMGLGVSGLAQQMFP
LATLKAAAVAAGLPLPPTITPPGCSTGSATNSNVGCLIIEPHLFAAADNF
KKELTAAAAAGAPLGLFQNLANQVQNANRLNGSCPSLPMGNPTPPPPPPA
PPASKVRRVQPSPQTTAINLSCSGGNSVQTQQQQSMQMPQIQQQQQPSPA
KTRKICDPRFPSDWDVSAVLQANRELDANTLFFLSLARQVRAMPMKFQSL
AKMRCMRIVSDLELELENFDCNGGAPPPDDSGGGGAGNLKYCSIDTPPPP
PQDGSVVIPPPPVGPEGSTEHFVYVMSPSRVESMIDISSDEEATMNGAPS
TGQV*

BS16529.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-PB 504 CG13204-PB 1..504 1..504 2615 100 Plus
CG13204-PA 605 CG13204-PA 102..605 1..504 2615 100 Plus