Clone Sequence Records
BS16529.3prime Sequence
900 bp (866 high quality bases) assembled on 2007-05-15
> BS16529.3prime
ATGGTCTAGAAAGCTTTTAAACCTGGCCCGTGGAGGGCGCTCCGTTCATG
GTCGCCTCCTCGTCGGAGGAGATGTCTATCATGCTCTCCACACGCGACGG
CGACATCACATACACAAAGTGCTCCGTGGAGCCCTCGGGGCCGACTGGCG
GCGGGGGTATGACCACGGAGCCGTCCTGCGGCGGCGGTGGCGGAGTATCT
ATGCTGCAGTACTTGAGATTCCCAGCTCCTCCTCCGCCTGAATCATCCGG
CGGTGGCGCTCCACCGTTGCAATCAAAGTTCTCCAGCTCTAGCTCCAAAT
CACTGACGATTCGCATGCAACGCATCTTGGCGAGCGACTGGAATTTCATG
GGCATAGCTCGCACCTGCCGCGCCAGACTCAAGAAGAAAAGAGTGTTTGC
GTCAAGTTCTCTGTTGGCCTGTAGCACGGCAGAGACGTCCCAATCGCTCG
GAAAACGCGGATCGCAAATCTTACGCGTTTTGGCGGGCGACGGCTGTTGT
TGCTGTTGAATTTGTGGCATTTGCATTGACTGCTGCTGCTGCGTTTGTAC
GGAATTCCCTCCGGAGCAACTTAGGTTGATGGCCGTGGTTTGCGGCGAAG
GTTGTACCCTTCGCACCTTGGAGGCTGGTGGCGCTGGCGGCGGCGGCGGA
GGAGTGGGATTACCCATGGGTAAGCTCGGGCAGCTGCCGTTCAAACGATT
GGCGTTCTGCACTTGGTTGGCCAGGTTCTGGAACAATCCCAAAGGTGCTC
CAGCTGCCGCAGCCGCTGTCAGTTCCTTCTTGAAGTTGTCCGCCGCCGCA
AAGAGATGCGGCTCGATGATCAGACAACCGACATTGCTGTTGGTTGCGCT
GCCGGTGCTGCAACCAGGCGGCGTGATCGTAGGTGGCAGGGGAAGACCAG
BS16529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-PA | 1818 | CG13204-RA | 935..1818 | 900..17 | 4395 | 99.8 | Minus |
CG13204-PB | 1515 | CG13204-RB | 632..1515 | 900..17 | 4395 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-RB | 1797 | CG13204-RB | 863..1746 | 900..17 | 4405 | 99.9 | Minus |
CG13204-RA | 2074 | CG13204-RA | 1140..2023 | 900..17 | 4405 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11369353..11370236 | 900..17 | 4405 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 02:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6854 | 548..487 | 148 | 71 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2418 | 541..487 | 133 | 74.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2402 | 548..491 | 128 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6797 | 541..477 | 123 | 67.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6806 | 541..487 | 122 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2394 | 548..493 | 119 | 73.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6899 | 548..493 | 116 | 71.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2427 | 542..493 | 115 | 70 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6863..6923 | 552..493 | 114 | 69.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1132 | 547..491 | 114 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2447..2508 | 548..487 | 112 | 64.5 | Minus |
BS16529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:56:51 Download gff for
BS16529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-PB | 632..1515 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:05 Download gff for
BS16529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 1140..2025 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:17:38 Download gff for
BS16529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 1140..2025 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:17:38 Download gff for
BS16529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11369353..11370238 | 13..900 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:05 Download gff for
BS16529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7256858..7257743 | 13..900 | 99 | | Minus |
BS16529.5prime Sequence
864 bp (768 high quality bases) assembled on 2007-05-15
> BS16529.5prime
GAAGTTATCAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCA
GGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAG
TGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGA
GGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCA
TGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCG
GCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGAT
CTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGG
GACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTA
AACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAG
TGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCT
CAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTG
GCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC
CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTGCTG
GTCTTCCCCTGCCACCTACGATCACGCCGCCTGGTTGCAGCACCGGCAGC
GCAACCAACAGCAATGTCGGTTGTCTGATCATCGAGCCGCATCTCTTTGC
GGCGGCGGACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGCTGGAG
CACCTTTGGGATTGTTCCAGAACCTGGCCAAACCAGTGCAGAACGCCAAT
CGTTTGAACGGCAG
BS16529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-PA | 1818 | CG13204-RA | 302..1151 | 15..864 | 4200 | 99.7 | Plus |
CG13204-PB | 1515 | CG13204-RB | 1..848 | 17..864 | 4190 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-RB | 1797 | CG13204-RB | 230..1079 | 15..864 | 4220 | 99.8 | Plus |
CG13204-RA | 2074 | CG13204-RA | 507..1356 | 15..864 | 4220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11368755..11369569 | 50..864 | 4045 | 99.8 | Plus |
2R | 25286936 | 2R | 11368662..11368699 | 15..52 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:34:35 has no hits.
BS16529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:07 Download gff for
BS16529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-PA | 296..1151 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:29 Download gff for
BS16529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 501..1356 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:27 Download gff for
BS16529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 501..1356 | 9..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:27 Download gff for
BS16529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11368656..11368698 | 9..51 | 95 | -> | Plus |
2R | 11368757..11369569 | 52..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:29 Download gff for
BS16529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7256161..7256203 | 9..51 | 95 | -> | Plus |
arm_2R | 7256262..7257074 | 52..864 | 99 | | Plus |
BS16529.complete Sequence
1547 bp assembled on 2007-05-07
GenBank Submission: FJ638161
> BS16529.complete
GAAGTTATCAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCA
GGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAG
TGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGA
GGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCA
TGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCG
GCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGAT
CTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGG
GACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTA
AACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAG
TGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCT
CAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTG
GCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC
CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTGCTG
GTCTTCCCCTGCCACCTACGATCACGCCGCCTGGTTGCAGCACCGGCAGC
GCAACCAACAGCAATGTCGGTTGTCTGATCATCGAGCCGCATCTCTTTGC
GGCGGCGGACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGCTGGAG
CACCTTTGGGATTGTTCCAGAACCTGGCCAACCAAGTGCAGAACGCCAAT
CGTTTGAACGGCAGCTGCCCGAGCTTACCCATGGGTAATCCCACTCCTCC
GCCGCCGCCGCCAGCGCCACCAGCCTCCAAGGTGCGAAGGGTACAACCTT
CGCCGCAAACCACGGCCATCAACCTAAGTTGCTCCGGAGGGAATTCCGTA
CAAACGCAGCAGCAGCAGTCAATGCAAATGCCACAAATTCAACAGCAACA
ACAGCCGTCGCCCGCCAAAACGCGTAAGATTTGCGATCCGCGTTTTCCGA
GCGATTGGGACGTCTCTGCCGTGCTACAGGCCAACAGAGAACTTGACGCA
AACACTCTTTTCTTCTTGAGTCTGGCGCGGCAGGTGCGAGCTATGCCCAT
GAAATTCCAGTCGCTCGCCAAGATGCGTTGCATGCGAATCGTCAGTGATT
TGGAGCTAGAGCTGGAGAACTTTGATTGCAACGGTGGAGCGCCACCGCCG
GATGATTCAGGCGGAGGAGGAGCTGGGAATCTCAAGTACTGCAGCATAGA
TACTCCGCCACCGCCGCCGCAGGACGGCTCCGTGGTCATACCCCCGCCGC
CAGTCGGCCCCGAGGGCTCCACGGAGCACTTTGTGTATGTGATGTCGCCG
TCGCGTGTGGAGAGCATGATAGACATCTCCTCCGACGAGGAGGCGACCAT
GAACGGAGCGCCCTCCACGGGCCAGGTTTAAAAGCTTTCTAGACCAT
BS16529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-RA | 1818 | CG13204-PA | 302..1818 | 15..1531 | 7570 | 99.9 | Plus |
CG13204-RB | 1515 | CG13204-PB | 1..1515 | 17..1531 | 7560 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-RB | 1797 | CG13204-RB | 230..1746 | 15..1531 | 7570 | 99.9 | Plus |
CG13204-RA | 2074 | CG13204-RA | 507..2023 | 15..1531 | 7570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11368755..11370236 | 50..1531 | 7395 | 99.9 | Plus |
2R | 25286936 | 2R | 11368662..11368699 | 15..52 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6854 | 1000..1061 | 148 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2402 | 1000..1057 | 128 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6797 | 1007..1071 | 123 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6806 | 1007..1061 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2394 | 1000..1055 | 119 | 73.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6899 | 1000..1055 | 116 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2427 | 1006..1055 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6863..6923 | 996..1055 | 114 | 69.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1132 | 1001..1057 | 114 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2447..2508 | 1000..1061 | 112 | 64.5 | Plus |
BS16529.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:49 Download gff for
BS16529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 296..1818 | 9..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:01 Download gff for
BS16529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RB | 231..1755 | 9..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:17 Download gff for
BS16529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 509..2021 | 17..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:49 Download gff for
BS16529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RB | 231..1755 | 9..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:39 Download gff for
BS16529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 509..2021 | 17..1529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:39 Download gff for
BS16529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11368664..11368698 | 17..51 | 100 | -> | Plus |
2R | 11368757..11370234 | 52..1529 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:17 Download gff for
BS16529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7256169..7256203 | 17..51 | 100 | -> | Plus |
arm_2R | 7256262..7257739 | 52..1529 | 99 | | Plus |
BS16529.pep Sequence
Translation from 16 to 1530
> BS16529.pep
MDFLKPFQGPGRNSANGNGKSNDEDDTECDFGYQVLAKAASNGGEDELKI
TIATASAGCSSMGTHTVNTYTTALSSTSASGITSSLGATTPPNMISPGSN
LGGTGGGSGSVGPQIHNSNSNGSATGSLNCAAVAPLSSMTPPATSGSNSA
VVLPLPISPASSVAAAAAAVSKANANALASLANHLPMGLGVSGLAQQMFP
LATLKAAAVAAGLPLPPTITPPGCSTGSATNSNVGCLIIEPHLFAAADNF
KKELTAAAAAGAPLGLFQNLANQVQNANRLNGSCPSLPMGNPTPPPPPPA
PPASKVRRVQPSPQTTAINLSCSGGNSVQTQQQQSMQMPQIQQQQQPSPA
KTRKICDPRFPSDWDVSAVLQANRELDANTLFFLSLARQVRAMPMKFQSL
AKMRCMRIVSDLELELENFDCNGGAPPPDDSGGGGAGNLKYCSIDTPPPP
PQDGSVVIPPPPVGPEGSTEHFVYVMSPSRVESMIDISSDEEATMNGAPS
TGQV*
BS16529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-PB | 504 | CG13204-PB | 1..504 | 1..504 | 2615 | 100 | Plus |
CG13204-PA | 605 | CG13204-PA | 102..605 | 1..504 | 2615 | 100 | Plus |