Clone Sequence Records
BS16533.3prime Sequence
273 bp (273 high quality bases) assembled on 2007-05-15
> BS16533.3prime
ATGGTCTAGAAAGCTTCTACGGACACTCCTTGTCGCTGATCTTTTGAAAG
TTTGCATTCTGGAGACAATTTTCCGTCTTCATCACGCACAGATTGCGATA
GGTCTTGGTGGAGCCCTTGTCGTCCGCAGCGCAAATGGATCGGTACTCCT
GCGTGTCGCACTCCATGACGCACTTGGTGCTGGGATCGGGCAGGCCGAGG
CACTGGACCAGCGAGAGGGCAAGCAGCGCGATGGCCAACAATACTGCTGA
GAGCTTCATGTCGACTGATAACT
BS16533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-PA | 243 | CG17278-RA | 1..243 | 259..17 | 1165 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-RA | 1934 | CG17278-RA | 1464..1709 | 261..16 | 1200 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21021405..21021584 | 52..231 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:59:55 has no hits.
BS16533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:53:52 Download gff for
BS16533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-PA | 1..243 | 17..259 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:48:02 Download gff for
BS16533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 12..261 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:25 Download gff for
BS16533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 12..261 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:25 Download gff for
BS16533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21021266..21021304 | 12..51 | 95 | <- | Plus |
3R | 21021405..21021584 | 52..231 | 99 | <- | Plus |
3R | 21022671..21022700 | 232..261 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:48:02 Download gff for
BS16533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16846988..16847026 | 12..51 | 95 | <- | Plus |
arm_3R | 16847127..16847306 | 52..231 | 99 | <- | Plus |
arm_3R | 16848393..16848422 | 232..261 | 100 | | Plus |
BS16533.5prime Sequence
273 bp (273 high quality bases) assembled on 2007-05-15
> BS16533.5prime
GAAGTTATCAGTCGACATGAAGCTCTCAGCAGTATTGTTGGCCATCGCGC
TGCTTGCCCTCTCGCTGGTCCAGTGCCTCGGCCTGCCCGATCCCAGCACC
AAGTGCGTCATGGAGTGCGACACGCAGGAGTACCGATCCATTTGCGCTGC
GGACGACAAGGGCTCCACCAAGACCTATCGCAATCTGTGCGTGATGAAGA
CGGAAAATTGTCTCCAGAATGCAAACTTTCAAAAGATCAGCGACAAGGAG
TGTCCGTAGAAGCTTTCTAGACC
BS16533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-PA | 243 | CG17278-RA | 1..243 | 17..259 | 1165 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-RA | 1934 | CG17278-RA | 1464..1709 | 15..260 | 1200 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21021405..21021584 | 224..45 | 885 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:44:25 has no hits.
BS16533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:48:25 Download gff for
BS16533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-PA | 1..243 | 17..259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:36 Download gff for
BS16533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 15..264 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:56 Download gff for
BS16533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 15..264 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:56 Download gff for
BS16533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21021266..21021304 | 225..264 | 95 | <- | Minus |
3R | 21021405..21021584 | 45..224 | 99 | <- | Minus |
3R | 21022671..21022700 | 15..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:36 Download gff for
BS16533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16846988..16847026 | 225..264 | 95 | <- | Minus |
arm_3R | 16847127..16847306 | 45..224 | 99 | <- | Minus |
arm_3R | 16848393..16848422 | 15..44 | 100 | | Minus |
BS16533.complete Sequence
275 bp assembled on 2007-05-07
GenBank Submission: FJ638162
> BS16533.complete
GAAGTTATCAGTCGACATGAAGCTCTCAGCAGTATTGTTGGCCATCGCGC
TGCTTGCCCTCTCGCTGGTCCAGTGCCTCGGCCTGCCCGATCCCAGCACC
AAGTGCGTCATGGAGTGCGACACGCAGGAGTACCGATCCATTTGCGCTGC
GGACGACAAGGGCTCCACCAAGACCTATCGCAATCTGTGCGTGATGAAGA
CGGAAAATTGTCTCCAGAATGCAAACTTTCAAAAGATCAGCGACAAGGAG
TGTCCGTAGAAGCTTTCTAGACCAT
BS16533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-RA | 243 | CG17278-PA | 1..243 | 17..259 | 1185 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-RA | 1934 | CG17278-RA | 1464..1709 | 15..260 | 1200 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21021405..21021584 | 224..45 | 885 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:34:03 has no hits.
BS16533.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:29 Download gff for
BS16533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1..243 | 17..259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:10 Download gff for
BS16533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 15..264 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:21 Download gff for
BS16533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1466..1708 | 17..259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:29 Download gff for
BS16533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 15..264 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:14 Download gff for
BS16533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1466..1708 | 17..259 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:14 Download gff for
BS16533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21021405..21021584 | 45..224 | 99 | <- | Minus |
3R | 21022671..21022698 | 17..44 | 100 | | Minus |
3R | 21021270..21021304 | 225..259 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:21 Download gff for
BS16533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16846992..16847026 | 225..259 | 97 | <- | Minus |
arm_3R | 16847127..16847306 | 45..224 | 99 | <- | Minus |
arm_3R | 16848393..16848420 | 17..44 | 100 | | Minus |
BS16533.pep Sequence
Translation from 16 to 258
> BS16533.pep
MKLSAVLLAIALLALSLVQCLGLPDPSTKCVMECDTQEYRSICAADDKGS
TKTYRNLCVMKTENCLQNANFQKISDKECP*
BS16533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-PA | 80 | CG17278-PA | 1..80 | 1..80 | 419 | 100 | Plus |